Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00859 and MPMX26_00860 are separated by 50 nucleotides MPMX26_00860 and MPMX26_00861 overlap by 53 nucleotides
MPMX26_00859: MPMX26_00859 - HTH-type transcriptional regulator DmlR, at 905,867 to 906,766
_00859
MPMX26_00860: MPMX26_00860 - L-threonine 3-dehydrogenase, at 906,817 to 907,875
_00860
MPMX26_00861: MPMX26_00861 - Mycocerosic acid synthase-like polyketide synthase, at 907,823 to 908,818
_00861
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1
2 at 905.962 kb on + strand, within MPMX26_00859 at 906.106 kb on + strand, within MPMX26_00859 at 906.124 kb on + strand, within MPMX26_00859 at 906.142 kb on + strand, within MPMX26_00859 at 906.173 kb on + strand, within MPMX26_00859 at 906.173 kb on + strand, within MPMX26_00859 at 906.173 kb on + strand, within MPMX26_00859 at 906.173 kb on + strand, within MPMX26_00859 at 906.173 kb on + strand, within MPMX26_00859 at 906.173 kb on + strand, within MPMX26_00859 at 906.173 kb on + strand, within MPMX26_00859 at 906.196 kb on + strand, within MPMX26_00859 at 906.257 kb on + strand, within MPMX26_00859 at 906.269 kb on + strand, within MPMX26_00859 at 906.394 kb on + strand, within MPMX26_00859 at 906.394 kb on + strand, within MPMX26_00859 at 906.394 kb on + strand, within MPMX26_00859 at 906.433 kb on + strand, within MPMX26_00859 at 906.572 kb on + strand, within MPMX26_00859 at 906.613 kb on + strand, within MPMX26_00859 at 906.613 kb on + strand, within MPMX26_00859 at 906.613 kb on + strand, within MPMX26_00859 at 906.613 kb on + strand, within MPMX26_00859 at 906.613 kb on + strand, within MPMX26_00859 at 906.613 kb on + strand, within MPMX26_00859 at 906.743 kb on + strand at 906.743 kb on + strand at 906.743 kb on + strand at 906.743 kb on + strand at 906.755 kb on + strand at 906.874 kb on - strand at 906.918 kb on - strand at 906.933 kb on - strand, within MPMX26_00860 at 907.029 kb on - strand, within MPMX26_00860 at 907.066 kb on - strand, within MPMX26_00860 at 907.173 kb on - strand, within MPMX26_00860 at 907.753 kb on - strand, within MPMX26_00860 at 907.813 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.903 kb on - strand at 907.970 kb on - strand, within MPMX26_00861 at 907.972 kb on - strand, within MPMX26_00861 at 907.984 kb on - strand, within MPMX26_00861 at 908.183 kb on - strand, within MPMX26_00861 at 908.354 kb on - strand, within MPMX26_00861 at 908.354 kb on - strand, within MPMX26_00861 at 908.360 kb on - strand, within MPMX26_00861 at 908.384 kb on - strand, within MPMX26_00861 at 908.543 kb on - strand, within MPMX26_00861 at 908.573 kb on - strand, within MPMX26_00861 at 908.612 kb on - strand, within MPMX26_00861 at 908.627 kb on - strand, within MPMX26_00861 at 908.750 kb on - strand at 908.810 kb on - strand at 908.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 905,962 + MPMX26_00859 0.11 +1.6 906,106 + MPMX26_00859 0.27 -0.3 906,124 + MPMX26_00859 0.29 +0.8 906,142 + MPMX26_00859 0.31 -0.5 906,173 + MPMX26_00859 0.34 -0.9 906,173 + MPMX26_00859 0.34 +1.1 906,173 + MPMX26_00859 0.34 -0.3 906,173 + MPMX26_00859 0.34 -0.3 906,173 + MPMX26_00859 0.34 -0.2 906,173 + MPMX26_00859 0.34 -1.9 906,173 + MPMX26_00859 0.34 +1.6 906,196 + MPMX26_00859 0.37 -1.7 906,257 + MPMX26_00859 0.43 -1.4 906,269 + MPMX26_00859 0.45 -0.4 906,394 + MPMX26_00859 0.59 +0.5 906,394 + MPMX26_00859 0.59 -0.0 906,394 + MPMX26_00859 0.59 -0.7 906,433 + MPMX26_00859 0.63 -0.5 906,572 + MPMX26_00859 0.78 -0.4 906,613 + MPMX26_00859 0.83 -0.5 906,613 + MPMX26_00859 0.83 -0.2 906,613 + MPMX26_00859 0.83 +0.2 906,613 + MPMX26_00859 0.83 -0.8 906,613 + MPMX26_00859 0.83 +0.2 906,613 + MPMX26_00859 0.83 +0.9 906,743 + +0.8 906,743 + +0.2 906,743 + +0.3 906,743 + -1.3 906,755 + +0.1 906,874 - +0.6 906,918 - -0.5 906,933 - MPMX26_00860 0.11 +1.0 907,029 - MPMX26_00860 0.20 +0.8 907,066 - MPMX26_00860 0.24 +2.2 907,173 - MPMX26_00860 0.34 +2.6 907,753 - MPMX26_00860 0.88 +0.3 907,813 - +1.4 907,870 - +0.3 907,870 - +0.3 907,870 - -1.7 907,870 - -0.7 907,870 - -1.0 907,870 - +1.1 907,903 - +1.3 907,970 - MPMX26_00861 0.15 -1.5 907,972 - MPMX26_00861 0.15 -0.4 907,984 - MPMX26_00861 0.16 -0.0 908,183 - MPMX26_00861 0.36 -0.2 908,354 - MPMX26_00861 0.53 -0.0 908,354 - MPMX26_00861 0.53 +1.4 908,360 - MPMX26_00861 0.54 -0.6 908,384 - MPMX26_00861 0.56 +0.4 908,543 - MPMX26_00861 0.72 -0.2 908,573 - MPMX26_00861 0.75 +0.3 908,612 - MPMX26_00861 0.79 +2.0 908,627 - MPMX26_00861 0.81 +0.3 908,750 - -0.2 908,810 - +0.9 908,810 - +1.6
Or see this region's nucleotide sequence