Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00604

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00603 and MPMX26_00604 are separated by 235 nucleotidesMPMX26_00604 and MPMX26_00605 are separated by 68 nucleotides MPMX26_00603: MPMX26_00603 - Cardiolipin synthase C, at 635,245 to 636,744 _00603 MPMX26_00604: MPMX26_00604 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 636,980 to 637,990 _00604 MPMX26_00605: MPMX26_00605 - Inner membrane metabolite transport protein YhjE, at 638,059 to 639,372 _00605 Position (kb) 636 637 638Strain fitness (log2 ratio) -2 -1 0 1 2 3at 636.032 kb on - strand, within MPMX26_00603at 636.042 kb on - strand, within MPMX26_00603at 636.099 kb on - strand, within MPMX26_00603at 636.144 kb on - strand, within MPMX26_00603at 636.157 kb on - strand, within MPMX26_00603at 636.186 kb on - strand, within MPMX26_00603at 636.186 kb on - strand, within MPMX26_00603at 636.213 kb on - strand, within MPMX26_00603at 636.223 kb on - strand, within MPMX26_00603at 636.282 kb on - strand, within MPMX26_00603at 636.372 kb on - strand, within MPMX26_00603at 636.478 kb on + strand, within MPMX26_00603at 636.486 kb on - strand, within MPMX26_00603at 636.486 kb on - strand, within MPMX26_00603at 636.486 kb on - strand, within MPMX26_00603at 636.486 kb on - strand, within MPMX26_00603at 636.486 kb on - strand, within MPMX26_00603at 636.513 kb on - strand, within MPMX26_00603at 636.513 kb on - strand, within MPMX26_00603at 636.519 kb on + strand, within MPMX26_00603at 636.535 kb on - strand, within MPMX26_00603at 636.564 kb on - strand, within MPMX26_00603at 636.564 kb on - strand, within MPMX26_00603at 636.603 kb on - strandat 636.603 kb on - strandat 636.622 kb on - strandat 636.631 kb on - strandat 636.636 kb on - strandat 636.636 kb on - strandat 636.636 kb on - strandat 636.636 kb on - strandat 636.636 kb on - strandat 636.649 kb on - strandat 636.675 kb on - strandat 636.675 kb on - strandat 636.675 kb on - strandat 636.675 kb on - strandat 636.705 kb on - strandat 636.732 kb on - strandat 636.754 kb on - strandat 636.754 kb on - strandat 636.769 kb on - strandat 636.774 kb on - strandat 636.774 kb on - strandat 636.774 kb on - strandat 636.788 kb on + strandat 637.036 kb on + strandat 637.036 kb on + strandat 637.172 kb on + strand, within MPMX26_00604at 637.205 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.229 kb on + strand, within MPMX26_00604at 637.259 kb on + strand, within MPMX26_00604at 637.321 kb on + strand, within MPMX26_00604at 637.343 kb on + strand, within MPMX26_00604at 637.442 kb on + strand, within MPMX26_00604at 637.450 kb on + strand, within MPMX26_00604at 637.498 kb on + strand, within MPMX26_00604at 637.508 kb on + strand, within MPMX26_00604at 637.541 kb on + strand, within MPMX26_00604at 637.543 kb on + strand, within MPMX26_00604at 637.543 kb on + strand, within MPMX26_00604at 637.543 kb on + strand, within MPMX26_00604at 637.543 kb on + strand, within MPMX26_00604at 637.543 kb on + strand, within MPMX26_00604at 637.559 kb on + strand, within MPMX26_00604at 637.580 kb on + strand, within MPMX26_00604at 637.588 kb on + strand, within MPMX26_00604at 637.588 kb on + strand, within MPMX26_00604at 637.588 kb on + strand, within MPMX26_00604at 637.645 kb on + strand, within MPMX26_00604at 637.653 kb on - strand, within MPMX26_00604at 637.655 kb on + strand, within MPMX26_00604at 637.691 kb on + strand, within MPMX26_00604at 637.691 kb on + strand, within MPMX26_00604at 637.697 kb on + strand, within MPMX26_00604at 637.708 kb on + strand, within MPMX26_00604at 637.708 kb on + strand, within MPMX26_00604at 637.822 kb on + strand, within MPMX26_00604at 637.852 kb on + strand, within MPMX26_00604at 637.920 kb on + strandat 637.930 kb on + strandat 638.065 kb on - strandat 638.132 kb on - strandat 638.223 kb on - strand, within MPMX26_00605at 638.262 kb on - strand, within MPMX26_00605at 638.275 kb on - strand, within MPMX26_00605at 638.275 kb on - strand, within MPMX26_00605at 638.275 kb on - strand, within MPMX26_00605at 638.275 kb on - strand, within MPMX26_00605at 638.275 kb on - strand, within MPMX26_00605at 638.275 kb on - strand, within MPMX26_00605at 638.283 kb on - strand, within MPMX26_00605at 638.285 kb on - strand, within MPMX26_00605at 638.290 kb on - strand, within MPMX26_00605at 638.368 kb on - strand, within MPMX26_00605at 638.368 kb on - strand, within MPMX26_00605at 638.377 kb on - strand, within MPMX26_00605at 638.406 kb on - strand, within MPMX26_00605at 638.417 kb on - strand, within MPMX26_00605at 638.417 kb on - strand, within MPMX26_00605at 638.419 kb on - strand, within MPMX26_00605at 638.422 kb on - strand, within MPMX26_00605at 638.422 kb on - strand, within MPMX26_00605at 638.470 kb on - strand, within MPMX26_00605at 638.478 kb on - strand, within MPMX26_00605at 638.545 kb on - strand, within MPMX26_00605at 638.547 kb on - strand, within MPMX26_00605at 638.547 kb on - strand, within MPMX26_00605at 638.547 kb on - strand, within MPMX26_00605at 638.547 kb on - strand, within MPMX26_00605at 638.557 kb on - strand, within MPMX26_00605at 638.563 kb on - strand, within MPMX26_00605at 638.581 kb on - strand, within MPMX26_00605at 638.605 kb on - strand, within MPMX26_00605at 638.628 kb on - strand, within MPMX26_00605at 638.742 kb on - strand, within MPMX26_00605at 638.742 kb on - strand, within MPMX26_00605at 638.745 kb on - strand, within MPMX26_00605at 638.755 kb on - strand, within MPMX26_00605at 638.755 kb on - strand, within MPMX26_00605at 638.765 kb on - strand, within MPMX26_00605at 638.792 kb on - strand, within MPMX26_00605at 638.797 kb on - strand, within MPMX26_00605at 638.887 kb on - strand, within MPMX26_00605at 638.911 kb on - strand, within MPMX26_00605at 638.911 kb on - strand, within MPMX26_00605at 638.940 kb on - strand, within MPMX26_00605at 638.940 kb on - strand, within MPMX26_00605at 638.950 kb on - strand, within MPMX26_00605at 638.950 kb on - strand, within MPMX26_00605at 638.955 kb on - strand, within MPMX26_00605at 638.958 kb on - strand, within MPMX26_00605at 638.973 kb on - strand, within MPMX26_00605at 638.980 kb on - strand, within MPMX26_00605

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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636,032 - MPMX26_00603 0.52 -2.3
636,042 - MPMX26_00603 0.53 -1.2
636,099 - MPMX26_00603 0.57 +0.1
636,144 - MPMX26_00603 0.60 +0.6
636,157 - MPMX26_00603 0.61 +0.4
636,186 - MPMX26_00603 0.63 +0.6
636,186 - MPMX26_00603 0.63 -0.7
636,213 - MPMX26_00603 0.65 -0.6
636,223 - MPMX26_00603 0.65 -1.1
636,282 - MPMX26_00603 0.69 +0.7
636,372 - MPMX26_00603 0.75 -0.5
636,478 + MPMX26_00603 0.82 +1.6
636,486 - MPMX26_00603 0.83 +0.2
636,486 - MPMX26_00603 0.83 -2.0
636,486 - MPMX26_00603 0.83 +0.7
636,486 - MPMX26_00603 0.83 -0.9
636,486 - MPMX26_00603 0.83 -1.1
636,513 - MPMX26_00603 0.85 -0.3
636,513 - MPMX26_00603 0.85 -0.5
636,519 + MPMX26_00603 0.85 +0.6
636,535 - MPMX26_00603 0.86 +3.6
636,564 - MPMX26_00603 0.88 -2.3
636,564 - MPMX26_00603 0.88 -0.5
636,603 - -0.4
636,603 - +0.2
636,622 - -1.4
636,631 - -0.1
636,636 - -1.2
636,636 - -0.8
636,636 - -2.6
636,636 - -0.9
636,636 - -0.3
636,649 - -1.2
636,675 - -1.5
636,675 - -0.5
636,675 - -0.0
636,675 - -1.2
636,705 - -0.8
636,732 - -1.1
636,754 - +0.8
636,754 - -1.6
636,769 - -0.9
636,774 - -0.4
636,774 - -0.0
636,774 - -0.9
636,788 + +0.3
637,036 + +1.8
637,036 + +0.8
637,172 + MPMX26_00604 0.19 -1.2
637,205 + MPMX26_00604 0.22 +0.4
637,229 + MPMX26_00604 0.25 -0.2
637,229 + MPMX26_00604 0.25 -0.1
637,229 + MPMX26_00604 0.25 +1.2
637,229 + MPMX26_00604 0.25 +0.1
637,229 + MPMX26_00604 0.25 +0.3
637,229 + MPMX26_00604 0.25 -0.1
637,229 + MPMX26_00604 0.25 -0.6
637,229 + MPMX26_00604 0.25 +1.0
637,229 + MPMX26_00604 0.25 -1.7
637,229 + MPMX26_00604 0.25 +1.1
637,229 + MPMX26_00604 0.25 -0.0
637,229 + MPMX26_00604 0.25 -0.0
637,229 + MPMX26_00604 0.25 +2.3
637,259 + MPMX26_00604 0.28 +1.8
637,321 + MPMX26_00604 0.34 +0.3
637,343 + MPMX26_00604 0.36 +1.0
637,442 + MPMX26_00604 0.46 -1.0
637,450 + MPMX26_00604 0.46 +0.2
637,498 + MPMX26_00604 0.51 +0.0
637,508 + MPMX26_00604 0.52 -0.3
637,541 + MPMX26_00604 0.55 +0.7
637,543 + MPMX26_00604 0.56 +0.8
637,543 + MPMX26_00604 0.56 -0.4
637,543 + MPMX26_00604 0.56 -0.1
637,543 + MPMX26_00604 0.56 +0.5
637,543 + MPMX26_00604 0.56 +1.2
637,559 + MPMX26_00604 0.57 +0.8
637,580 + MPMX26_00604 0.59 -0.8
637,588 + MPMX26_00604 0.60 -0.0
637,588 + MPMX26_00604 0.60 -0.0
637,588 + MPMX26_00604 0.60 -0.9
637,645 + MPMX26_00604 0.66 +1.3
637,653 - MPMX26_00604 0.67 +1.6
637,655 + MPMX26_00604 0.67 +0.9
637,691 + MPMX26_00604 0.70 +0.2
637,691 + MPMX26_00604 0.70 +0.7
637,697 + MPMX26_00604 0.71 +0.5
637,708 + MPMX26_00604 0.72 -0.2
637,708 + MPMX26_00604 0.72 +2.0
637,822 + MPMX26_00604 0.83 +1.1
637,852 + MPMX26_00604 0.86 +1.0
637,920 + +1.1
637,930 + -0.0
638,065 - +1.2
638,132 - -1.3
638,223 - MPMX26_00605 0.12 -0.2
638,262 - MPMX26_00605 0.15 +0.1
638,275 - MPMX26_00605 0.16 -1.0
638,275 - MPMX26_00605 0.16 +0.3
638,275 - MPMX26_00605 0.16 -0.2
638,275 - MPMX26_00605 0.16 +0.6
638,275 - MPMX26_00605 0.16 +0.6
638,275 - MPMX26_00605 0.16 +0.3
638,283 - MPMX26_00605 0.17 -0.1
638,285 - MPMX26_00605 0.17 -0.6
638,290 - MPMX26_00605 0.18 -0.7
638,368 - MPMX26_00605 0.24 +0.3
638,368 - MPMX26_00605 0.24 +0.4
638,377 - MPMX26_00605 0.24 -0.4
638,406 - MPMX26_00605 0.26 -0.0
638,417 - MPMX26_00605 0.27 -0.4
638,417 - MPMX26_00605 0.27 -0.6
638,419 - MPMX26_00605 0.27 +0.2
638,422 - MPMX26_00605 0.28 -0.3
638,422 - MPMX26_00605 0.28 +0.2
638,470 - MPMX26_00605 0.31 -2.2
638,478 - MPMX26_00605 0.32 +0.3
638,545 - MPMX26_00605 0.37 +0.6
638,547 - MPMX26_00605 0.37 -0.4
638,547 - MPMX26_00605 0.37 -1.0
638,547 - MPMX26_00605 0.37 -1.1
638,547 - MPMX26_00605 0.37 +0.0
638,557 - MPMX26_00605 0.38 +1.5
638,563 - MPMX26_00605 0.38 +1.0
638,581 - MPMX26_00605 0.40 -0.4
638,605 - MPMX26_00605 0.42 -1.2
638,628 - MPMX26_00605 0.43 +0.3
638,742 - MPMX26_00605 0.52 +0.1
638,742 - MPMX26_00605 0.52 -0.3
638,745 - MPMX26_00605 0.52 +0.0
638,755 - MPMX26_00605 0.53 -0.7
638,755 - MPMX26_00605 0.53 -0.2
638,765 - MPMX26_00605 0.54 -0.8
638,792 - MPMX26_00605 0.56 -0.8
638,797 - MPMX26_00605 0.56 +0.6
638,887 - MPMX26_00605 0.63 -1.0
638,911 - MPMX26_00605 0.65 +0.2
638,911 - MPMX26_00605 0.65 -0.2
638,940 - MPMX26_00605 0.67 +0.1
638,940 - MPMX26_00605 0.67 -0.0
638,950 - MPMX26_00605 0.68 +0.5
638,950 - MPMX26_00605 0.68 +0.4
638,955 - MPMX26_00605 0.68 +0.1
638,958 - MPMX26_00605 0.68 +0.2
638,973 - MPMX26_00605 0.70 -0.3
638,980 - MPMX26_00605 0.70 +0.2

Or see this region's nucleotide sequence