Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00603 and MPMX26_00604 are separated by 235 nucleotides MPMX26_00604 and MPMX26_00605 are separated by 68 nucleotides
MPMX26_00603: MPMX26_00603 - Cardiolipin synthase C, at 635,245 to 636,744
_00603
MPMX26_00604: MPMX26_00604 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 636,980 to 637,990
_00604
MPMX26_00605: MPMX26_00605 - Inner membrane metabolite transport protein YhjE, at 638,059 to 639,372
_00605
Position (kb)
636
637
638 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 636.032 kb on - strand, within MPMX26_00603 at 636.042 kb on - strand, within MPMX26_00603 at 636.099 kb on - strand, within MPMX26_00603 at 636.144 kb on - strand, within MPMX26_00603 at 636.157 kb on - strand, within MPMX26_00603 at 636.186 kb on - strand, within MPMX26_00603 at 636.186 kb on - strand, within MPMX26_00603 at 636.213 kb on - strand, within MPMX26_00603 at 636.223 kb on - strand, within MPMX26_00603 at 636.282 kb on - strand, within MPMX26_00603 at 636.372 kb on - strand, within MPMX26_00603 at 636.478 kb on + strand, within MPMX26_00603 at 636.486 kb on - strand, within MPMX26_00603 at 636.486 kb on - strand, within MPMX26_00603 at 636.486 kb on - strand, within MPMX26_00603 at 636.486 kb on - strand, within MPMX26_00603 at 636.486 kb on - strand, within MPMX26_00603 at 636.513 kb on - strand, within MPMX26_00603 at 636.513 kb on - strand, within MPMX26_00603 at 636.519 kb on + strand, within MPMX26_00603 at 636.535 kb on - strand, within MPMX26_00603 at 636.564 kb on - strand, within MPMX26_00603 at 636.564 kb on - strand, within MPMX26_00603 at 636.603 kb on - strand at 636.603 kb on - strand at 636.622 kb on - strand at 636.631 kb on - strand at 636.636 kb on - strand at 636.636 kb on - strand at 636.636 kb on - strand at 636.636 kb on - strand at 636.636 kb on - strand at 636.649 kb on - strand at 636.675 kb on - strand at 636.675 kb on - strand at 636.675 kb on - strand at 636.675 kb on - strand at 636.705 kb on - strand at 636.732 kb on - strand at 636.754 kb on - strand at 636.754 kb on - strand at 636.769 kb on - strand at 636.774 kb on - strand at 636.774 kb on - strand at 636.774 kb on - strand at 636.788 kb on + strand at 637.036 kb on + strand at 637.036 kb on + strand at 637.172 kb on + strand, within MPMX26_00604 at 637.205 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.229 kb on + strand, within MPMX26_00604 at 637.259 kb on + strand, within MPMX26_00604 at 637.321 kb on + strand, within MPMX26_00604 at 637.343 kb on + strand, within MPMX26_00604 at 637.442 kb on + strand, within MPMX26_00604 at 637.450 kb on + strand, within MPMX26_00604 at 637.498 kb on + strand, within MPMX26_00604 at 637.508 kb on + strand, within MPMX26_00604 at 637.541 kb on + strand, within MPMX26_00604 at 637.543 kb on + strand, within MPMX26_00604 at 637.543 kb on + strand, within MPMX26_00604 at 637.543 kb on + strand, within MPMX26_00604 at 637.543 kb on + strand, within MPMX26_00604 at 637.543 kb on + strand, within MPMX26_00604 at 637.559 kb on + strand, within MPMX26_00604 at 637.580 kb on + strand, within MPMX26_00604 at 637.588 kb on + strand, within MPMX26_00604 at 637.588 kb on + strand, within MPMX26_00604 at 637.588 kb on + strand, within MPMX26_00604 at 637.645 kb on + strand, within MPMX26_00604 at 637.653 kb on - strand, within MPMX26_00604 at 637.655 kb on + strand, within MPMX26_00604 at 637.691 kb on + strand, within MPMX26_00604 at 637.691 kb on + strand, within MPMX26_00604 at 637.697 kb on + strand, within MPMX26_00604 at 637.708 kb on + strand, within MPMX26_00604 at 637.708 kb on + strand, within MPMX26_00604 at 637.822 kb on + strand, within MPMX26_00604 at 637.852 kb on + strand, within MPMX26_00604 at 637.920 kb on + strand at 637.930 kb on + strand at 638.065 kb on - strand at 638.132 kb on - strand at 638.223 kb on - strand, within MPMX26_00605 at 638.262 kb on - strand, within MPMX26_00605 at 638.275 kb on - strand, within MPMX26_00605 at 638.275 kb on - strand, within MPMX26_00605 at 638.275 kb on - strand, within MPMX26_00605 at 638.275 kb on - strand, within MPMX26_00605 at 638.275 kb on - strand, within MPMX26_00605 at 638.275 kb on - strand, within MPMX26_00605 at 638.283 kb on - strand, within MPMX26_00605 at 638.285 kb on - strand, within MPMX26_00605 at 638.290 kb on - strand, within MPMX26_00605 at 638.368 kb on - strand, within MPMX26_00605 at 638.368 kb on - strand, within MPMX26_00605 at 638.377 kb on - strand, within MPMX26_00605 at 638.406 kb on - strand, within MPMX26_00605 at 638.417 kb on - strand, within MPMX26_00605 at 638.417 kb on - strand, within MPMX26_00605 at 638.419 kb on - strand, within MPMX26_00605 at 638.422 kb on - strand, within MPMX26_00605 at 638.422 kb on - strand, within MPMX26_00605 at 638.470 kb on - strand, within MPMX26_00605 at 638.478 kb on - strand, within MPMX26_00605 at 638.545 kb on - strand, within MPMX26_00605 at 638.547 kb on - strand, within MPMX26_00605 at 638.547 kb on - strand, within MPMX26_00605 at 638.547 kb on - strand, within MPMX26_00605 at 638.547 kb on - strand, within MPMX26_00605 at 638.557 kb on - strand, within MPMX26_00605 at 638.563 kb on - strand, within MPMX26_00605 at 638.581 kb on - strand, within MPMX26_00605 at 638.605 kb on - strand, within MPMX26_00605 at 638.628 kb on - strand, within MPMX26_00605 at 638.742 kb on - strand, within MPMX26_00605 at 638.742 kb on - strand, within MPMX26_00605 at 638.745 kb on - strand, within MPMX26_00605 at 638.755 kb on - strand, within MPMX26_00605 at 638.755 kb on - strand, within MPMX26_00605 at 638.765 kb on - strand, within MPMX26_00605 at 638.792 kb on - strand, within MPMX26_00605 at 638.797 kb on - strand, within MPMX26_00605 at 638.887 kb on - strand, within MPMX26_00605 at 638.911 kb on - strand, within MPMX26_00605 at 638.911 kb on - strand, within MPMX26_00605 at 638.940 kb on - strand, within MPMX26_00605 at 638.940 kb on - strand, within MPMX26_00605 at 638.950 kb on - strand, within MPMX26_00605 at 638.950 kb on - strand, within MPMX26_00605 at 638.955 kb on - strand, within MPMX26_00605 at 638.958 kb on - strand, within MPMX26_00605 at 638.973 kb on - strand, within MPMX26_00605 at 638.980 kb on - strand, within MPMX26_00605
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 636,032 - MPMX26_00603 0.52 -2.3 636,042 - MPMX26_00603 0.53 -1.2 636,099 - MPMX26_00603 0.57 +0.1 636,144 - MPMX26_00603 0.60 +0.6 636,157 - MPMX26_00603 0.61 +0.4 636,186 - MPMX26_00603 0.63 +0.6 636,186 - MPMX26_00603 0.63 -0.7 636,213 - MPMX26_00603 0.65 -0.6 636,223 - MPMX26_00603 0.65 -1.1 636,282 - MPMX26_00603 0.69 +0.7 636,372 - MPMX26_00603 0.75 -0.5 636,478 + MPMX26_00603 0.82 +1.6 636,486 - MPMX26_00603 0.83 +0.2 636,486 - MPMX26_00603 0.83 -2.0 636,486 - MPMX26_00603 0.83 +0.7 636,486 - MPMX26_00603 0.83 -0.9 636,486 - MPMX26_00603 0.83 -1.1 636,513 - MPMX26_00603 0.85 -0.3 636,513 - MPMX26_00603 0.85 -0.5 636,519 + MPMX26_00603 0.85 +0.6 636,535 - MPMX26_00603 0.86 +3.6 636,564 - MPMX26_00603 0.88 -2.3 636,564 - MPMX26_00603 0.88 -0.5 636,603 - -0.4 636,603 - +0.2 636,622 - -1.4 636,631 - -0.1 636,636 - -1.2 636,636 - -0.8 636,636 - -2.6 636,636 - -0.9 636,636 - -0.3 636,649 - -1.2 636,675 - -1.5 636,675 - -0.5 636,675 - -0.0 636,675 - -1.2 636,705 - -0.8 636,732 - -1.1 636,754 - +0.8 636,754 - -1.6 636,769 - -0.9 636,774 - -0.4 636,774 - -0.0 636,774 - -0.9 636,788 + +0.3 637,036 + +1.8 637,036 + +0.8 637,172 + MPMX26_00604 0.19 -1.2 637,205 + MPMX26_00604 0.22 +0.4 637,229 + MPMX26_00604 0.25 -0.2 637,229 + MPMX26_00604 0.25 -0.1 637,229 + MPMX26_00604 0.25 +1.2 637,229 + MPMX26_00604 0.25 +0.1 637,229 + MPMX26_00604 0.25 +0.3 637,229 + MPMX26_00604 0.25 -0.1 637,229 + MPMX26_00604 0.25 -0.6 637,229 + MPMX26_00604 0.25 +1.0 637,229 + MPMX26_00604 0.25 -1.7 637,229 + MPMX26_00604 0.25 +1.1 637,229 + MPMX26_00604 0.25 -0.0 637,229 + MPMX26_00604 0.25 -0.0 637,229 + MPMX26_00604 0.25 +2.3 637,259 + MPMX26_00604 0.28 +1.8 637,321 + MPMX26_00604 0.34 +0.3 637,343 + MPMX26_00604 0.36 +1.0 637,442 + MPMX26_00604 0.46 -1.0 637,450 + MPMX26_00604 0.46 +0.2 637,498 + MPMX26_00604 0.51 +0.0 637,508 + MPMX26_00604 0.52 -0.3 637,541 + MPMX26_00604 0.55 +0.7 637,543 + MPMX26_00604 0.56 +0.8 637,543 + MPMX26_00604 0.56 -0.4 637,543 + MPMX26_00604 0.56 -0.1 637,543 + MPMX26_00604 0.56 +0.5 637,543 + MPMX26_00604 0.56 +1.2 637,559 + MPMX26_00604 0.57 +0.8 637,580 + MPMX26_00604 0.59 -0.8 637,588 + MPMX26_00604 0.60 -0.0 637,588 + MPMX26_00604 0.60 -0.0 637,588 + MPMX26_00604 0.60 -0.9 637,645 + MPMX26_00604 0.66 +1.3 637,653 - MPMX26_00604 0.67 +1.6 637,655 + MPMX26_00604 0.67 +0.9 637,691 + MPMX26_00604 0.70 +0.2 637,691 + MPMX26_00604 0.70 +0.7 637,697 + MPMX26_00604 0.71 +0.5 637,708 + MPMX26_00604 0.72 -0.2 637,708 + MPMX26_00604 0.72 +2.0 637,822 + MPMX26_00604 0.83 +1.1 637,852 + MPMX26_00604 0.86 +1.0 637,920 + +1.1 637,930 + -0.0 638,065 - +1.2 638,132 - -1.3 638,223 - MPMX26_00605 0.12 -0.2 638,262 - MPMX26_00605 0.15 +0.1 638,275 - MPMX26_00605 0.16 -1.0 638,275 - MPMX26_00605 0.16 +0.3 638,275 - MPMX26_00605 0.16 -0.2 638,275 - MPMX26_00605 0.16 +0.6 638,275 - MPMX26_00605 0.16 +0.6 638,275 - MPMX26_00605 0.16 +0.3 638,283 - MPMX26_00605 0.17 -0.1 638,285 - MPMX26_00605 0.17 -0.6 638,290 - MPMX26_00605 0.18 -0.7 638,368 - MPMX26_00605 0.24 +0.3 638,368 - MPMX26_00605 0.24 +0.4 638,377 - MPMX26_00605 0.24 -0.4 638,406 - MPMX26_00605 0.26 -0.0 638,417 - MPMX26_00605 0.27 -0.4 638,417 - MPMX26_00605 0.27 -0.6 638,419 - MPMX26_00605 0.27 +0.2 638,422 - MPMX26_00605 0.28 -0.3 638,422 - MPMX26_00605 0.28 +0.2 638,470 - MPMX26_00605 0.31 -2.2 638,478 - MPMX26_00605 0.32 +0.3 638,545 - MPMX26_00605 0.37 +0.6 638,547 - MPMX26_00605 0.37 -0.4 638,547 - MPMX26_00605 0.37 -1.0 638,547 - MPMX26_00605 0.37 -1.1 638,547 - MPMX26_00605 0.37 +0.0 638,557 - MPMX26_00605 0.38 +1.5 638,563 - MPMX26_00605 0.38 +1.0 638,581 - MPMX26_00605 0.40 -0.4 638,605 - MPMX26_00605 0.42 -1.2 638,628 - MPMX26_00605 0.43 +0.3 638,742 - MPMX26_00605 0.52 +0.1 638,742 - MPMX26_00605 0.52 -0.3 638,745 - MPMX26_00605 0.52 +0.0 638,755 - MPMX26_00605 0.53 -0.7 638,755 - MPMX26_00605 0.53 -0.2 638,765 - MPMX26_00605 0.54 -0.8 638,792 - MPMX26_00605 0.56 -0.8 638,797 - MPMX26_00605 0.56 +0.6 638,887 - MPMX26_00605 0.63 -1.0 638,911 - MPMX26_00605 0.65 +0.2 638,911 - MPMX26_00605 0.65 -0.2 638,940 - MPMX26_00605 0.67 +0.1 638,940 - MPMX26_00605 0.67 -0.0 638,950 - MPMX26_00605 0.68 +0.5 638,950 - MPMX26_00605 0.68 +0.4 638,955 - MPMX26_00605 0.68 +0.1 638,958 - MPMX26_00605 0.68 +0.2 638,973 - MPMX26_00605 0.70 -0.3 638,980 - MPMX26_00605 0.70 +0.2
Or see this region's nucleotide sequence