Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00599

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00597 and MPMX26_00598 are separated by 111 nucleotidesMPMX26_00598 and MPMX26_00599 are separated by 92 nucleotidesMPMX26_00599 and MPMX26_00600 are separated by 12 nucleotidesMPMX26_00600 and MPMX26_00601 are separated by 38 nucleotides MPMX26_00597: MPMX26_00597 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 630,029 to 630,871 _00597 MPMX26_00598: MPMX26_00598 - hypothetical protein, at 630,983 to 631,432 _00598 MPMX26_00599: MPMX26_00599 - Holin-like protein CidB, at 631,525 to 632,193 _00599 MPMX26_00600: MPMX26_00600 - hypothetical protein, at 632,206 to 632,577 _00600 MPMX26_00601: MPMX26_00601 - GTPase HflX, at 632,616 to 633,956 _00601 Position (kb) 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 630.573 kb on + strand, within MPMX26_00597at 630.573 kb on + strand, within MPMX26_00597at 630.590 kb on + strand, within MPMX26_00597at 630.599 kb on + strand, within MPMX26_00597at 630.599 kb on + strand, within MPMX26_00597at 630.609 kb on + strand, within MPMX26_00597at 630.626 kb on + strand, within MPMX26_00597at 630.722 kb on + strand, within MPMX26_00597at 630.740 kb on + strand, within MPMX26_00597at 630.740 kb on + strand, within MPMX26_00597at 630.740 kb on + strand, within MPMX26_00597at 630.740 kb on + strand, within MPMX26_00597at 630.740 kb on + strand, within MPMX26_00597at 630.740 kb on + strand, within MPMX26_00597at 630.740 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.748 kb on + strand, within MPMX26_00597at 630.782 kb on + strand, within MPMX26_00597at 630.788 kb on + strandat 630.856 kb on + strandat 630.866 kb on + strandat 630.866 kb on + strandat 630.866 kb on + strandat 630.892 kb on + strandat 630.994 kb on - strandat 631.154 kb on - strand, within MPMX26_00598at 631.159 kb on - strand, within MPMX26_00598at 631.168 kb on - strand, within MPMX26_00598at 631.168 kb on - strand, within MPMX26_00598at 631.201 kb on - strand, within MPMX26_00598at 631.239 kb on - strand, within MPMX26_00598at 631.239 kb on - strand, within MPMX26_00598at 631.239 kb on - strand, within MPMX26_00598at 631.246 kb on - strand, within MPMX26_00598at 631.246 kb on - strand, within MPMX26_00598at 631.262 kb on - strand, within MPMX26_00598at 631.364 kb on - strand, within MPMX26_00598at 631.364 kb on - strand, within MPMX26_00598at 631.385 kb on - strand, within MPMX26_00598at 631.385 kb on - strand, within MPMX26_00598at 631.385 kb on - strand, within MPMX26_00598at 631.638 kb on - strand, within MPMX26_00599at 631.638 kb on - strand, within MPMX26_00599at 631.638 kb on - strand, within MPMX26_00599at 631.671 kb on - strand, within MPMX26_00599at 631.671 kb on - strand, within MPMX26_00599at 631.671 kb on - strand, within MPMX26_00599at 631.671 kb on - strand, within MPMX26_00599at 631.671 kb on - strand, within MPMX26_00599at 631.701 kb on - strand, within MPMX26_00599at 631.776 kb on - strand, within MPMX26_00599at 631.776 kb on - strand, within MPMX26_00599at 631.806 kb on - strand, within MPMX26_00599at 631.845 kb on - strand, within MPMX26_00599at 631.845 kb on - strand, within MPMX26_00599at 631.888 kb on - strand, within MPMX26_00599at 631.888 kb on - strand, within MPMX26_00599at 631.893 kb on - strand, within MPMX26_00599at 631.923 kb on - strand, within MPMX26_00599at 632.002 kb on - strand, within MPMX26_00599at 632.053 kb on - strand, within MPMX26_00599at 632.113 kb on - strand, within MPMX26_00599at 632.251 kb on - strand, within MPMX26_00600at 632.266 kb on - strand, within MPMX26_00600at 632.271 kb on - strand, within MPMX26_00600at 632.451 kb on - strand, within MPMX26_00600at 632.451 kb on - strand, within MPMX26_00600at 632.469 kb on - strand, within MPMX26_00600at 632.499 kb on - strand, within MPMX26_00600at 632.586 kb on - strandat 632.607 kb on - strandat 632.630 kb on - strandat 632.674 kb on - strandat 632.674 kb on - strandat 632.674 kb on - strandat 632.674 kb on - strandat 632.674 kb on - strandat 632.681 kb on - strandat 632.681 kb on - strandat 632.681 kb on - strandat 632.705 kb on - strandat 632.705 kb on - strandat 632.705 kb on - strandat 632.736 kb on - strandat 632.736 kb on - strandat 632.802 kb on - strand, within MPMX26_00601at 632.814 kb on - strand, within MPMX26_00601at 632.814 kb on - strand, within MPMX26_00601at 632.814 kb on - strand, within MPMX26_00601at 632.814 kb on - strand, within MPMX26_00601at 632.826 kb on - strand, within MPMX26_00601at 632.826 kb on - strand, within MPMX26_00601at 632.847 kb on - strand, within MPMX26_00601at 632.847 kb on - strand, within MPMX26_00601at 632.847 kb on - strand, within MPMX26_00601at 632.847 kb on - strand, within MPMX26_00601at 632.847 kb on - strand, within MPMX26_00601at 632.873 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.891 kb on - strand, within MPMX26_00601at 632.901 kb on - strand, within MPMX26_00601at 632.914 kb on - strand, within MPMX26_00601at 632.921 kb on - strand, within MPMX26_00601at 632.921 kb on - strand, within MPMX26_00601at 632.926 kb on - strand, within MPMX26_00601at 632.943 kb on - strand, within MPMX26_00601at 632.953 kb on - strand, within MPMX26_00601at 633.009 kb on - strand, within MPMX26_00601at 633.023 kb on - strand, within MPMX26_00601at 633.026 kb on - strand, within MPMX26_00601at 633.028 kb on - strand, within MPMX26_00601at 633.028 kb on - strand, within MPMX26_00601at 633.028 kb on - strand, within MPMX26_00601at 633.032 kb on - strand, within MPMX26_00601at 633.032 kb on - strand, within MPMX26_00601at 633.032 kb on - strand, within MPMX26_00601at 633.032 kb on - strand, within MPMX26_00601at 633.072 kb on - strand, within MPMX26_00601at 633.072 kb on - strand, within MPMX26_00601at 633.091 kb on - strand, within MPMX26_00601at 633.091 kb on - strand, within MPMX26_00601at 633.158 kb on - strand, within MPMX26_00601at 633.165 kb on - strand, within MPMX26_00601at 633.177 kb on - strand, within MPMX26_00601at 633.177 kb on - strand, within MPMX26_00601at 633.177 kb on - strand, within MPMX26_00601at 633.177 kb on - strand, within MPMX26_00601at 633.177 kb on - strand, within MPMX26_00601at 633.193 kb on - strand, within MPMX26_00601at 633.193 kb on - strand, within MPMX26_00601

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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630,573 + MPMX26_00597 0.65 -0.9
630,573 + MPMX26_00597 0.65 -0.6
630,590 + MPMX26_00597 0.67 -1.5
630,599 + MPMX26_00597 0.68 +0.3
630,599 + MPMX26_00597 0.68 -1.1
630,609 + MPMX26_00597 0.69 -0.6
630,626 + MPMX26_00597 0.71 -0.4
630,722 + MPMX26_00597 0.82 -0.4
630,740 + MPMX26_00597 0.84 -0.2
630,740 + MPMX26_00597 0.84 +0.3
630,740 + MPMX26_00597 0.84 -0.4
630,740 + MPMX26_00597 0.84 -1.4
630,740 + MPMX26_00597 0.84 -1.8
630,740 + MPMX26_00597 0.84 -2.0
630,740 + MPMX26_00597 0.84 -1.1
630,748 + MPMX26_00597 0.85 -0.4
630,748 + MPMX26_00597 0.85 -2.5
630,748 + MPMX26_00597 0.85 +0.2
630,748 + MPMX26_00597 0.85 -2.4
630,748 + MPMX26_00597 0.85 -1.6
630,748 + MPMX26_00597 0.85 -1.0
630,748 + MPMX26_00597 0.85 -1.3
630,748 + MPMX26_00597 0.85 -1.1
630,748 + MPMX26_00597 0.85 -2.9
630,748 + MPMX26_00597 0.85 -2.4
630,748 + MPMX26_00597 0.85 -2.0
630,748 + MPMX26_00597 0.85 -0.7
630,748 + MPMX26_00597 0.85 -1.5
630,748 + MPMX26_00597 0.85 -0.4
630,748 + MPMX26_00597 0.85 -2.9
630,748 + MPMX26_00597 0.85 -2.2
630,748 + MPMX26_00597 0.85 -1.9
630,782 + MPMX26_00597 0.89 -3.1
630,788 + -0.2
630,856 + -0.4
630,866 + -0.7
630,866 + -0.1
630,866 + -0.0
630,892 + +0.4
630,994 - -0.4
631,154 - MPMX26_00598 0.38 +0.5
631,159 - MPMX26_00598 0.39 -0.5
631,168 - MPMX26_00598 0.41 +0.5
631,168 - MPMX26_00598 0.41 -0.0
631,201 - MPMX26_00598 0.48 -1.1
631,239 - MPMX26_00598 0.57 -0.6
631,239 - MPMX26_00598 0.57 +0.7
631,239 - MPMX26_00598 0.57 -0.4
631,246 - MPMX26_00598 0.58 +0.5
631,246 - MPMX26_00598 0.58 +0.3
631,262 - MPMX26_00598 0.62 +1.0
631,364 - MPMX26_00598 0.85 -0.8
631,364 - MPMX26_00598 0.85 -0.4
631,385 - MPMX26_00598 0.89 +0.4
631,385 - MPMX26_00598 0.89 -0.1
631,385 - MPMX26_00598 0.89 +0.1
631,638 - MPMX26_00599 0.17 -0.5
631,638 - MPMX26_00599 0.17 -1.0
631,638 - MPMX26_00599 0.17 -1.9
631,671 - MPMX26_00599 0.22 +2.6
631,671 - MPMX26_00599 0.22 +0.1
631,671 - MPMX26_00599 0.22 -0.5
631,671 - MPMX26_00599 0.22 -0.8
631,671 - MPMX26_00599 0.22 +0.7
631,701 - MPMX26_00599 0.26 -0.4
631,776 - MPMX26_00599 0.38 -2.3
631,776 - MPMX26_00599 0.38 -0.8
631,806 - MPMX26_00599 0.42 -0.4
631,845 - MPMX26_00599 0.48 -1.9
631,845 - MPMX26_00599 0.48 -1.8
631,888 - MPMX26_00599 0.54 -0.8
631,888 - MPMX26_00599 0.54 -1.8
631,893 - MPMX26_00599 0.55 -0.3
631,923 - MPMX26_00599 0.59 +0.5
632,002 - MPMX26_00599 0.71 +1.6
632,053 - MPMX26_00599 0.79 +0.4
632,113 - MPMX26_00599 0.88 +0.3
632,251 - MPMX26_00600 0.12 +0.6
632,266 - MPMX26_00600 0.16 +1.1
632,271 - MPMX26_00600 0.17 -0.6
632,451 - MPMX26_00600 0.66 -0.8
632,451 - MPMX26_00600 0.66 -1.4
632,469 - MPMX26_00600 0.71 +0.1
632,499 - MPMX26_00600 0.79 +0.4
632,586 - -0.5
632,607 - +0.2
632,630 - +0.1
632,674 - +1.0
632,674 - +0.6
632,674 - +0.8
632,674 - +1.2
632,674 - -0.3
632,681 - -0.4
632,681 - +0.2
632,681 - +0.7
632,705 - +1.0
632,705 - +0.1
632,705 - +0.1
632,736 - -0.5
632,736 - -0.2
632,802 - MPMX26_00601 0.14 -0.8
632,814 - MPMX26_00601 0.15 +0.2
632,814 - MPMX26_00601 0.15 -0.2
632,814 - MPMX26_00601 0.15 +0.6
632,814 - MPMX26_00601 0.15 +1.2
632,826 - MPMX26_00601 0.16 +0.0
632,826 - MPMX26_00601 0.16 +1.0
632,847 - MPMX26_00601 0.17 +0.6
632,847 - MPMX26_00601 0.17 -0.6
632,847 - MPMX26_00601 0.17 -1.0
632,847 - MPMX26_00601 0.17 -0.6
632,847 - MPMX26_00601 0.17 +0.2
632,873 - MPMX26_00601 0.19 -0.4
632,891 - MPMX26_00601 0.21 -1.5
632,891 - MPMX26_00601 0.21 -0.2
632,891 - MPMX26_00601 0.21 +0.2
632,891 - MPMX26_00601 0.21 +0.4
632,891 - MPMX26_00601 0.21 +0.1
632,891 - MPMX26_00601 0.21 +1.6
632,891 - MPMX26_00601 0.21 -1.2
632,891 - MPMX26_00601 0.21 -0.6
632,891 - MPMX26_00601 0.21 +0.8
632,891 - MPMX26_00601 0.21 -0.3
632,891 - MPMX26_00601 0.21 +0.4
632,901 - MPMX26_00601 0.21 -1.0
632,914 - MPMX26_00601 0.22 +0.1
632,921 - MPMX26_00601 0.23 +0.3
632,921 - MPMX26_00601 0.23 -0.0
632,926 - MPMX26_00601 0.23 -0.0
632,943 - MPMX26_00601 0.24 +0.0
632,953 - MPMX26_00601 0.25 +0.1
633,009 - MPMX26_00601 0.29 -0.4
633,023 - MPMX26_00601 0.30 -0.7
633,026 - MPMX26_00601 0.31 +0.4
633,028 - MPMX26_00601 0.31 -0.4
633,028 - MPMX26_00601 0.31 +0.1
633,028 - MPMX26_00601 0.31 -0.8
633,032 - MPMX26_00601 0.31 -0.6
633,032 - MPMX26_00601 0.31 -1.0
633,032 - MPMX26_00601 0.31 -0.9
633,032 - MPMX26_00601 0.31 -0.3
633,072 - MPMX26_00601 0.34 +0.0
633,072 - MPMX26_00601 0.34 -0.0
633,091 - MPMX26_00601 0.35 +0.1
633,091 - MPMX26_00601 0.35 +1.0
633,158 - MPMX26_00601 0.40 +0.6
633,165 - MPMX26_00601 0.41 +0.2
633,177 - MPMX26_00601 0.42 +0.1
633,177 - MPMX26_00601 0.42 +0.5
633,177 - MPMX26_00601 0.42 -0.9
633,177 - MPMX26_00601 0.42 +0.2
633,177 - MPMX26_00601 0.42 +0.6
633,193 - MPMX26_00601 0.43 +0.5
633,193 - MPMX26_00601 0.43 -0.1

Or see this region's nucleotide sequence