Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00549

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00547 and MPMX26_00548 overlap by 4 nucleotidesMPMX26_00548 and MPMX26_00549 are separated by 2 nucleotidesMPMX26_00549 and MPMX26_00550 are separated by 56 nucleotidesMPMX26_00550 and MPMX26_00551 are separated by 118 nucleotidesMPMX26_00551 and MPMX26_00552 are separated by 77 nucleotides MPMX26_00547: MPMX26_00547 - RNase adapter protein RapZ, at 579,917 to 580,768 _00547 MPMX26_00548: MPMX26_00548 - Phosphocarrier protein NPr, at 580,765 to 581,034 _00548 MPMX26_00549: MPMX26_00549 - hypothetical protein, at 581,037 to 581,573 _00549 MPMX26_00550: MPMX26_00550 - hypothetical protein, at 581,630 to 581,881 _00550 MPMX26_00551: MPMX26_00551 - hypothetical protein, at 582,000 to 582,422 _00551 MPMX26_00552: MPMX26_00552 - Long-chain-fatty-acid--CoA ligase, at 582,500 to 584,143 _00552 Position (kb) 581 582Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 580.065 kb on + strand, within MPMX26_00547at 580.075 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.086 kb on + strand, within MPMX26_00547at 580.091 kb on + strand, within MPMX26_00547at 580.103 kb on + strand, within MPMX26_00547at 580.184 kb on + strand, within MPMX26_00547at 580.210 kb on + strand, within MPMX26_00547at 580.210 kb on + strand, within MPMX26_00547at 580.210 kb on + strand, within MPMX26_00547at 580.217 kb on + strand, within MPMX26_00547at 580.257 kb on + strand, within MPMX26_00547at 580.291 kb on + strand, within MPMX26_00547at 580.301 kb on + strand, within MPMX26_00547at 580.306 kb on + strand, within MPMX26_00547at 580.314 kb on + strand, within MPMX26_00547at 580.316 kb on + strand, within MPMX26_00547at 580.387 kb on + strand, within MPMX26_00547at 580.522 kb on + strand, within MPMX26_00547at 580.522 kb on + strand, within MPMX26_00547at 580.556 kb on + strand, within MPMX26_00547at 580.565 kb on + strand, within MPMX26_00547at 580.583 kb on + strand, within MPMX26_00547at 580.607 kb on + strand, within MPMX26_00547at 580.613 kb on + strand, within MPMX26_00547at 580.620 kb on + strand, within MPMX26_00547at 580.659 kb on + strand, within MPMX26_00547at 580.667 kb on + strand, within MPMX26_00547at 580.682 kb on + strand, within MPMX26_00547at 580.725 kb on + strandat 580.725 kb on + strandat 580.725 kb on + strandat 580.725 kb on + strandat 580.725 kb on + strandat 580.725 kb on + strandat 580.730 kb on + strandat 580.730 kb on + strandat 580.730 kb on + strandat 580.736 kb on + strandat 580.759 kb on + strandat 580.761 kb on + strandat 580.761 kb on + strandat 580.761 kb on + strandat 580.761 kb on + strandat 580.761 kb on + strandat 580.802 kb on + strand, within MPMX26_00548at 580.802 kb on + strand, within MPMX26_00548at 580.802 kb on + strand, within MPMX26_00548at 580.844 kb on - strand, within MPMX26_00548at 580.925 kb on + strand, within MPMX26_00548at 580.929 kb on + strand, within MPMX26_00548at 580.930 kb on + strand, within MPMX26_00548at 580.930 kb on + strand, within MPMX26_00548at 580.930 kb on + strand, within MPMX26_00548at 580.930 kb on + strand, within MPMX26_00548at 580.933 kb on - strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.935 kb on + strand, within MPMX26_00548at 580.937 kb on + strand, within MPMX26_00548at 580.943 kb on - strand, within MPMX26_00548at 580.943 kb on - strand, within MPMX26_00548at 580.943 kb on - strand, within MPMX26_00548at 580.943 kb on - strand, within MPMX26_00548at 580.943 kb on - strand, within MPMX26_00548at 580.943 kb on - strand, within MPMX26_00548at 580.943 kb on - strand, within MPMX26_00548at 580.945 kb on - strand, within MPMX26_00548at 580.945 kb on - strand, within MPMX26_00548at 581.029 kb on + strandat 581.035 kb on + strandat 581.037 kb on - strandat 581.055 kb on - strandat 581.079 kb on + strandat 581.079 kb on + strandat 581.121 kb on + strand, within MPMX26_00549at 581.136 kb on + strand, within MPMX26_00549at 581.136 kb on + strand, within MPMX26_00549at 581.136 kb on + strand, within MPMX26_00549at 581.143 kb on + strand, within MPMX26_00549at 581.151 kb on - strand, within MPMX26_00549at 581.188 kb on + strand, within MPMX26_00549at 581.244 kb on - strand, within MPMX26_00549at 581.312 kb on + strand, within MPMX26_00549at 581.318 kb on + strand, within MPMX26_00549at 581.354 kb on + strand, within MPMX26_00549at 581.354 kb on + strand, within MPMX26_00549at 581.365 kb on + strand, within MPMX26_00549at 581.365 kb on + strand, within MPMX26_00549at 581.381 kb on + strand, within MPMX26_00549at 581.382 kb on + strand, within MPMX26_00549at 581.382 kb on + strand, within MPMX26_00549at 581.382 kb on - strand, within MPMX26_00549at 581.387 kb on + strand, within MPMX26_00549at 581.428 kb on - strand, within MPMX26_00549at 581.435 kb on + strand, within MPMX26_00549at 581.443 kb on - strand, within MPMX26_00549at 581.443 kb on - strand, within MPMX26_00549at 581.486 kb on + strand, within MPMX26_00549at 581.489 kb on + strand, within MPMX26_00549at 581.489 kb on + strand, within MPMX26_00549at 581.533 kb on + strandat 581.536 kb on + strandat 581.536 kb on - strandat 581.541 kb on - strandat 581.541 kb on - strandat 581.541 kb on - strandat 581.541 kb on - strandat 581.568 kb on + strandat 581.664 kb on + strand, within MPMX26_00550at 581.672 kb on - strand, within MPMX26_00550at 581.672 kb on - strand, within MPMX26_00550at 581.674 kb on + strand, within MPMX26_00550at 581.683 kb on - strand, within MPMX26_00550at 581.695 kb on - strand, within MPMX26_00550at 581.705 kb on + strand, within MPMX26_00550at 581.711 kb on - strand, within MPMX26_00550at 581.713 kb on - strand, within MPMX26_00550at 581.713 kb on - strand, within MPMX26_00550at 581.734 kb on + strand, within MPMX26_00550at 581.762 kb on + strand, within MPMX26_00550at 581.770 kb on - strand, within MPMX26_00550at 581.770 kb on - strand, within MPMX26_00550at 581.770 kb on - strand, within MPMX26_00550at 581.770 kb on - strand, within MPMX26_00550at 581.770 kb on - strand, within MPMX26_00550at 581.770 kb on - strand, within MPMX26_00550at 581.770 kb on - strand, within MPMX26_00550at 581.776 kb on - strand, within MPMX26_00550at 581.822 kb on - strand, within MPMX26_00550at 581.832 kb on - strand, within MPMX26_00550at 582.296 kb on - strand, within MPMX26_00551at 582.309 kb on - strand, within MPMX26_00551at 582.482 kb on - strandat 582.526 kb on - strandat 582.532 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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580,065 + MPMX26_00547 0.17 -0.2
580,075 + MPMX26_00547 0.19 -0.9
580,086 + MPMX26_00547 0.20 -0.1
580,086 + MPMX26_00547 0.20 -0.3
580,086 + MPMX26_00547 0.20 -1.3
580,086 + MPMX26_00547 0.20 +0.4
580,086 + MPMX26_00547 0.20 -1.9
580,086 + MPMX26_00547 0.20 -1.1
580,086 + MPMX26_00547 0.20 -0.0
580,086 + MPMX26_00547 0.20 -1.3
580,086 + MPMX26_00547 0.20 -1.8
580,086 + MPMX26_00547 0.20 -1.9
580,086 + MPMX26_00547 0.20 +0.0
580,086 + MPMX26_00547 0.20 -0.6
580,086 + MPMX26_00547 0.20 -1.9
580,086 + MPMX26_00547 0.20 -1.8
580,086 + MPMX26_00547 0.20 -0.6
580,091 + MPMX26_00547 0.20 +0.2
580,103 + MPMX26_00547 0.22 +0.4
580,184 + MPMX26_00547 0.31 -0.9
580,210 + MPMX26_00547 0.34 -0.7
580,210 + MPMX26_00547 0.34 -0.8
580,210 + MPMX26_00547 0.34 -1.6
580,217 + MPMX26_00547 0.35 -0.1
580,257 + MPMX26_00547 0.40 -1.0
580,291 + MPMX26_00547 0.44 -1.6
580,301 + MPMX26_00547 0.45 +0.4
580,306 + MPMX26_00547 0.46 +0.0
580,314 + MPMX26_00547 0.47 -1.3
580,316 + MPMX26_00547 0.47 -1.1
580,387 + MPMX26_00547 0.55 -0.6
580,522 + MPMX26_00547 0.71 -0.7
580,522 + MPMX26_00547 0.71 -0.9
580,556 + MPMX26_00547 0.75 -2.4
580,565 + MPMX26_00547 0.76 -0.5
580,583 + MPMX26_00547 0.78 -0.2
580,607 + MPMX26_00547 0.81 -0.4
580,613 + MPMX26_00547 0.82 -0.6
580,620 + MPMX26_00547 0.83 +0.6
580,659 + MPMX26_00547 0.87 -1.8
580,667 + MPMX26_00547 0.88 -0.5
580,682 + MPMX26_00547 0.90 -0.1
580,725 + -0.3
580,725 + -0.2
580,725 + +1.8
580,725 + +0.6
580,725 + -0.2
580,725 + -1.4
580,730 + -0.6
580,730 + -1.9
580,730 + -0.5
580,736 + -1.6
580,759 + +0.4
580,761 + +1.0
580,761 + +0.0
580,761 + +0.2
580,761 + -0.2
580,761 + +0.7
580,802 + MPMX26_00548 0.14 -0.6
580,802 + MPMX26_00548 0.14 -0.6
580,802 + MPMX26_00548 0.14 +0.1
580,844 - MPMX26_00548 0.29 +0.6
580,925 + MPMX26_00548 0.59 -1.0
580,929 + MPMX26_00548 0.61 -0.7
580,930 + MPMX26_00548 0.61 -0.6
580,930 + MPMX26_00548 0.61 -1.5
580,930 + MPMX26_00548 0.61 -0.0
580,930 + MPMX26_00548 0.61 -0.7
580,933 - MPMX26_00548 0.62 +0.1
580,935 + MPMX26_00548 0.63 -0.6
580,935 + MPMX26_00548 0.63 -0.3
580,935 + MPMX26_00548 0.63 -0.7
580,935 + MPMX26_00548 0.63 -1.7
580,935 + MPMX26_00548 0.63 -0.8
580,935 + MPMX26_00548 0.63 +0.2
580,935 + MPMX26_00548 0.63 -1.1
580,935 + MPMX26_00548 0.63 -1.5
580,935 + MPMX26_00548 0.63 -1.3
580,935 + MPMX26_00548 0.63 -1.1
580,935 + MPMX26_00548 0.63 -2.6
580,937 + MPMX26_00548 0.64 -1.4
580,943 - MPMX26_00548 0.66 -0.4
580,943 - MPMX26_00548 0.66 +1.1
580,943 - MPMX26_00548 0.66 -2.1
580,943 - MPMX26_00548 0.66 -3.4
580,943 - MPMX26_00548 0.66 -0.2
580,943 - MPMX26_00548 0.66 -3.1
580,943 - MPMX26_00548 0.66 +0.6
580,945 - MPMX26_00548 0.67 -2.3
580,945 - MPMX26_00548 0.67 -1.9
581,029 + -1.8
581,035 + +0.6
581,037 - +0.2
581,055 - -0.6
581,079 + -2.1
581,079 + -2.1
581,121 + MPMX26_00549 0.16 +0.6
581,136 + MPMX26_00549 0.18 -1.0
581,136 + MPMX26_00549 0.18 -1.6
581,136 + MPMX26_00549 0.18 -2.2
581,143 + MPMX26_00549 0.20 -0.4
581,151 - MPMX26_00549 0.21 +0.6
581,188 + MPMX26_00549 0.28 -0.2
581,244 - MPMX26_00549 0.39 -2.4
581,312 + MPMX26_00549 0.51 -1.9
581,318 + MPMX26_00549 0.52 -1.4
581,354 + MPMX26_00549 0.59 -1.4
581,354 + MPMX26_00549 0.59 -0.0
581,365 + MPMX26_00549 0.61 -1.6
581,365 + MPMX26_00549 0.61 +0.7
581,381 + MPMX26_00549 0.64 -0.5
581,382 + MPMX26_00549 0.64 -3.4
581,382 + MPMX26_00549 0.64 -0.9
581,382 - MPMX26_00549 0.64 -0.2
581,387 + MPMX26_00549 0.65 -1.9
581,428 - MPMX26_00549 0.73 -1.0
581,435 + MPMX26_00549 0.74 -1.4
581,443 - MPMX26_00549 0.76 -0.3
581,443 - MPMX26_00549 0.76 -0.9
581,486 + MPMX26_00549 0.84 -2.0
581,489 + MPMX26_00549 0.84 -0.5
581,489 + MPMX26_00549 0.84 -1.8
581,533 + -0.8
581,536 + -2.7
581,536 - -0.4
581,541 - -1.8
581,541 - -1.9
581,541 - -0.8
581,541 - +0.2
581,568 + -0.2
581,664 + MPMX26_00550 0.13 -0.8
581,672 - MPMX26_00550 0.17 -0.6
581,672 - MPMX26_00550 0.17 -0.7
581,674 + MPMX26_00550 0.17 -0.1
581,683 - MPMX26_00550 0.21 +1.0
581,695 - MPMX26_00550 0.26 +0.0
581,705 + MPMX26_00550 0.30 +0.1
581,711 - MPMX26_00550 0.32 -0.2
581,713 - MPMX26_00550 0.33 +0.3
581,713 - MPMX26_00550 0.33 +0.5
581,734 + MPMX26_00550 0.41 +1.6
581,762 + MPMX26_00550 0.52 +1.6
581,770 - MPMX26_00550 0.56 +1.8
581,770 - MPMX26_00550 0.56 +0.3
581,770 - MPMX26_00550 0.56 +0.9
581,770 - MPMX26_00550 0.56 +0.9
581,770 - MPMX26_00550 0.56 +1.7
581,770 - MPMX26_00550 0.56 -0.1
581,770 - MPMX26_00550 0.56 +0.8
581,776 - MPMX26_00550 0.58 -0.8
581,822 - MPMX26_00550 0.76 +0.9
581,832 - MPMX26_00550 0.80 -0.0
582,296 - MPMX26_00551 0.70 +0.9
582,309 - MPMX26_00551 0.73 -0.0
582,482 - +0.4
582,526 - +0.6
582,532 - -0.0

Or see this region's nucleotide sequence