Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00545

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00543 and MPMX26_00544 overlap by 4 nucleotidesMPMX26_00544 and MPMX26_00545 are separated by 37 nucleotidesMPMX26_00545 and MPMX26_00546 are separated by 3 nucleotidesMPMX26_00546 and MPMX26_00547 are separated by 32 nucleotides MPMX26_00543: MPMX26_00543 - Poly(A) polymerase I, at 576,252 to 577,703 _00543 MPMX26_00544: MPMX26_00544 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 577,700 to 578,188 _00544 MPMX26_00545: MPMX26_00545 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 578,226 to 579,035 _00545 MPMX26_00546: MPMX26_00546 - Pantothenate synthetase, at 579,039 to 579,884 _00546 MPMX26_00547: MPMX26_00547 - RNase adapter protein RapZ, at 579,917 to 580,768 _00547 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1at 577.228 kb on + strand, within MPMX26_00543at 577.251 kb on + strand, within MPMX26_00543at 577.287 kb on + strand, within MPMX26_00543at 577.298 kb on + strand, within MPMX26_00543at 577.351 kb on + strand, within MPMX26_00543at 577.367 kb on + strand, within MPMX26_00543at 577.375 kb on + strand, within MPMX26_00543at 577.380 kb on + strand, within MPMX26_00543at 577.380 kb on + strand, within MPMX26_00543at 577.380 kb on + strand, within MPMX26_00543at 577.387 kb on + strand, within MPMX26_00543at 577.395 kb on + strand, within MPMX26_00543at 577.403 kb on + strand, within MPMX26_00543at 577.432 kb on + strand, within MPMX26_00543at 577.437 kb on + strand, within MPMX26_00543at 577.468 kb on + strand, within MPMX26_00543at 577.468 kb on + strand, within MPMX26_00543at 577.483 kb on + strand, within MPMX26_00543at 577.534 kb on + strand, within MPMX26_00543at 577.534 kb on + strand, within MPMX26_00543at 577.573 kb on + strandat 577.573 kb on + strandat 577.582 kb on - strandat 577.582 kb on - strandat 577.595 kb on + strandat 577.595 kb on + strandat 577.595 kb on + strandat 577.612 kb on + strandat 577.622 kb on + strandat 577.622 kb on + strandat 577.622 kb on + strandat 577.622 kb on + strandat 577.663 kb on + strandat 577.663 kb on + strandat 577.664 kb on + strandat 577.685 kb on + strandat 577.702 kb on + strandat 577.702 kb on + strandat 578.171 kb on + strandat 578.182 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.250 kb on - strandat 578.252 kb on + strandat 578.259 kb on + strandat 578.260 kb on - strandat 578.260 kb on - strandat 578.260 kb on - strandat 578.260 kb on - strandat 578.295 kb on + strandat 578.313 kb on + strand, within MPMX26_00545at 578.313 kb on + strand, within MPMX26_00545at 578.335 kb on + strand, within MPMX26_00545at 578.343 kb on - strand, within MPMX26_00545at 578.360 kb on + strand, within MPMX26_00545at 578.365 kb on + strand, within MPMX26_00545at 578.370 kb on + strand, within MPMX26_00545at 578.370 kb on + strand, within MPMX26_00545at 578.378 kb on - strand, within MPMX26_00545at 578.410 kb on - strand, within MPMX26_00545at 578.416 kb on - strand, within MPMX26_00545at 578.423 kb on - strand, within MPMX26_00545at 578.427 kb on + strand, within MPMX26_00545at 578.459 kb on + strand, within MPMX26_00545at 578.501 kb on - strand, within MPMX26_00545at 578.502 kb on - strand, within MPMX26_00545at 578.524 kb on + strand, within MPMX26_00545at 578.524 kb on + strand, within MPMX26_00545at 578.539 kb on + strand, within MPMX26_00545at 578.539 kb on + strand, within MPMX26_00545at 578.586 kb on + strand, within MPMX26_00545at 578.592 kb on + strand, within MPMX26_00545at 578.608 kb on + strand, within MPMX26_00545at 578.620 kb on + strand, within MPMX26_00545at 578.628 kb on - strand, within MPMX26_00545at 578.647 kb on + strand, within MPMX26_00545at 578.664 kb on + strand, within MPMX26_00545at 578.664 kb on + strand, within MPMX26_00545at 578.678 kb on + strand, within MPMX26_00545at 578.686 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.717 kb on + strand, within MPMX26_00545at 578.722 kb on + strand, within MPMX26_00545at 578.725 kb on - strand, within MPMX26_00545at 578.725 kb on - strand, within MPMX26_00545at 578.725 kb on - strand, within MPMX26_00545at 578.729 kb on + strand, within MPMX26_00545at 578.730 kb on + strand, within MPMX26_00545at 578.766 kb on + strand, within MPMX26_00545at 578.809 kb on - strand, within MPMX26_00545at 578.822 kb on - strand, within MPMX26_00545at 578.824 kb on + strand, within MPMX26_00545at 578.827 kb on - strand, within MPMX26_00545at 578.832 kb on - strand, within MPMX26_00545at 578.851 kb on + strand, within MPMX26_00545at 578.855 kb on + strand, within MPMX26_00545at 578.855 kb on + strand, within MPMX26_00545at 578.855 kb on + strand, within MPMX26_00545at 578.870 kb on + strand, within MPMX26_00545at 578.870 kb on + strand, within MPMX26_00545at 578.878 kb on - strand, within MPMX26_00545at 578.885 kb on + strand, within MPMX26_00545at 578.896 kb on + strand, within MPMX26_00545at 578.904 kb on - strand, within MPMX26_00545at 578.972 kb on + strandat 578.972 kb on + strandat 578.982 kb on + strandat 578.982 kb on + strandat 579.009 kb on + strandat 579.016 kb on + strandat 579.029 kb on + strandat 579.885 kb on + strandat 579.969 kb on + strandat 580.002 kb on + strandat 580.004 kb on + strand, within MPMX26_00547

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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577,228 + MPMX26_00543 0.67 -3.0
577,251 + MPMX26_00543 0.69 -2.3
577,287 + MPMX26_00543 0.71 -3.0
577,298 + MPMX26_00543 0.72 -0.3
577,351 + MPMX26_00543 0.76 -1.1
577,367 + MPMX26_00543 0.77 -0.7
577,375 + MPMX26_00543 0.77 -2.0
577,380 + MPMX26_00543 0.78 -1.8
577,380 + MPMX26_00543 0.78 -0.7
577,380 + MPMX26_00543 0.78 -2.5
577,387 + MPMX26_00543 0.78 -0.2
577,395 + MPMX26_00543 0.79 +1.0
577,403 + MPMX26_00543 0.79 -2.3
577,432 + MPMX26_00543 0.81 -2.5
577,437 + MPMX26_00543 0.82 -0.8
577,468 + MPMX26_00543 0.84 -1.2
577,468 + MPMX26_00543 0.84 -0.1
577,483 + MPMX26_00543 0.85 -0.8
577,534 + MPMX26_00543 0.88 -1.1
577,534 + MPMX26_00543 0.88 +0.6
577,573 + -0.7
577,573 + -0.9
577,582 - -0.4
577,582 - -0.8
577,595 + -0.5
577,595 + -1.0
577,595 + -0.4
577,612 + -0.4
577,622 + -0.1
577,622 + +0.6
577,622 + +1.0
577,622 + -1.1
577,663 + -0.5
577,663 + -0.2
577,664 + -0.1
577,685 + -0.3
577,702 + -0.4
577,702 + +1.0
578,171 + +0.5
578,182 + -0.6
578,242 + -2.9
578,242 + -1.2
578,242 + -1.8
578,242 + -2.9
578,242 + -3.3
578,242 + -2.5
578,242 + -3.7
578,242 + -2.8
578,242 + -2.8
578,250 - -1.1
578,252 + -1.4
578,259 + -3.5
578,260 - +0.6
578,260 - +0.2
578,260 - -1.0
578,260 - -0.2
578,295 + -1.8
578,313 + MPMX26_00545 0.11 +1.0
578,313 + MPMX26_00545 0.11 -3.2
578,335 + MPMX26_00545 0.13 -2.5
578,343 - MPMX26_00545 0.14 -0.4
578,360 + MPMX26_00545 0.17 -0.2
578,365 + MPMX26_00545 0.17 -2.6
578,370 + MPMX26_00545 0.18 -0.0
578,370 + MPMX26_00545 0.18 -2.2
578,378 - MPMX26_00545 0.19 +0.2
578,410 - MPMX26_00545 0.23 -0.2
578,416 - MPMX26_00545 0.23 -1.8
578,423 - MPMX26_00545 0.24 +1.6
578,427 + MPMX26_00545 0.25 -0.0
578,459 + MPMX26_00545 0.29 -1.6
578,501 - MPMX26_00545 0.34 -0.9
578,502 - MPMX26_00545 0.34 +0.6
578,524 + MPMX26_00545 0.37 -1.8
578,524 + MPMX26_00545 0.37 -0.9
578,539 + MPMX26_00545 0.39 -1.3
578,539 + MPMX26_00545 0.39 -2.3
578,586 + MPMX26_00545 0.44 -2.3
578,592 + MPMX26_00545 0.45 -2.1
578,608 + MPMX26_00545 0.47 -2.1
578,620 + MPMX26_00545 0.49 -1.1
578,628 - MPMX26_00545 0.50 +0.2
578,647 + MPMX26_00545 0.52 -0.4
578,664 + MPMX26_00545 0.54 -2.6
578,664 + MPMX26_00545 0.54 -1.8
578,678 + MPMX26_00545 0.56 -2.1
578,686 + MPMX26_00545 0.57 -1.1
578,717 + MPMX26_00545 0.61 -1.3
578,717 + MPMX26_00545 0.61 -2.8
578,717 + MPMX26_00545 0.61 -3.3
578,717 + MPMX26_00545 0.61 -3.6
578,717 + MPMX26_00545 0.61 -2.6
578,717 + MPMX26_00545 0.61 -3.5
578,717 + MPMX26_00545 0.61 -2.2
578,717 + MPMX26_00545 0.61 -3.4
578,717 + MPMX26_00545 0.61 -1.4
578,717 + MPMX26_00545 0.61 -0.9
578,717 + MPMX26_00545 0.61 -1.8
578,717 + MPMX26_00545 0.61 -0.7
578,717 + MPMX26_00545 0.61 -1.3
578,722 + MPMX26_00545 0.61 -3.6
578,725 - MPMX26_00545 0.62 -0.9
578,725 - MPMX26_00545 0.62 -0.9
578,725 - MPMX26_00545 0.62 +0.6
578,729 + MPMX26_00545 0.62 -1.4
578,730 + MPMX26_00545 0.62 -0.9
578,766 + MPMX26_00545 0.67 -1.9
578,809 - MPMX26_00545 0.72 -1.2
578,822 - MPMX26_00545 0.74 -0.4
578,824 + MPMX26_00545 0.74 -0.4
578,827 - MPMX26_00545 0.74 -1.8
578,832 - MPMX26_00545 0.75 +0.2
578,851 + MPMX26_00545 0.77 -2.7
578,855 + MPMX26_00545 0.78 -0.9
578,855 + MPMX26_00545 0.78 -2.5
578,855 + MPMX26_00545 0.78 -3.7
578,870 + MPMX26_00545 0.80 -0.0
578,870 + MPMX26_00545 0.80 -2.1
578,878 - MPMX26_00545 0.80 -1.9
578,885 + MPMX26_00545 0.81 -3.0
578,896 + MPMX26_00545 0.83 -2.9
578,904 - MPMX26_00545 0.84 +0.2
578,972 + -2.9
578,972 + -2.0
578,982 + -1.1
578,982 + -1.8
579,009 + -1.3
579,016 + -1.6
579,029 + -0.1
579,885 + -0.4
579,969 + -0.9
580,002 + -0.4
580,004 + MPMX26_00547 0.10 -0.4

Or see this region's nucleotide sequence