Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00543

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00541 and MPMX26_00542 are separated by 16 nucleotidesMPMX26_00542 and MPMX26_00543 are separated by 135 nucleotidesMPMX26_00543 and MPMX26_00544 overlap by 4 nucleotidesMPMX26_00544 and MPMX26_00545 are separated by 37 nucleotides MPMX26_00541: MPMX26_00541 - Nucleoside triphosphate pyrophosphohydrolase, at 574,901 to 575,683 _00541 MPMX26_00542: MPMX26_00542 - hypothetical protein, at 575,700 to 576,116 _00542 MPMX26_00543: MPMX26_00543 - Poly(A) polymerase I, at 576,252 to 577,703 _00543 MPMX26_00544: MPMX26_00544 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 577,700 to 578,188 _00544 MPMX26_00545: MPMX26_00545 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 578,226 to 579,035 _00545 Position (kb) 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 575.281 kb on + strand, within MPMX26_00541at 575.408 kb on + strand, within MPMX26_00541at 575.417 kb on + strand, within MPMX26_00541at 575.545 kb on + strand, within MPMX26_00541at 575.591 kb on + strand, within MPMX26_00541at 576.059 kb on + strand, within MPMX26_00542at 576.151 kb on + strandat 576.189 kb on + strandat 576.190 kb on + strandat 576.202 kb on + strandat 576.235 kb on + strandat 576.235 kb on + strandat 576.370 kb on + strandat 576.405 kb on + strand, within MPMX26_00543at 576.414 kb on + strand, within MPMX26_00543at 576.424 kb on + strand, within MPMX26_00543at 576.440 kb on + strand, within MPMX26_00543at 576.440 kb on + strand, within MPMX26_00543at 576.440 kb on + strand, within MPMX26_00543at 576.450 kb on + strand, within MPMX26_00543at 576.469 kb on + strand, within MPMX26_00543at 576.511 kb on + strand, within MPMX26_00543at 576.511 kb on + strand, within MPMX26_00543at 576.521 kb on + strand, within MPMX26_00543at 576.558 kb on + strand, within MPMX26_00543at 576.558 kb on + strand, within MPMX26_00543at 576.576 kb on + strand, within MPMX26_00543at 576.577 kb on + strand, within MPMX26_00543at 576.597 kb on + strand, within MPMX26_00543at 576.607 kb on + strand, within MPMX26_00543at 576.653 kb on + strand, within MPMX26_00543at 576.653 kb on + strand, within MPMX26_00543at 576.653 kb on + strand, within MPMX26_00543at 576.699 kb on + strand, within MPMX26_00543at 576.699 kb on + strand, within MPMX26_00543at 576.699 kb on + strand, within MPMX26_00543at 576.741 kb on + strand, within MPMX26_00543at 576.850 kb on + strand, within MPMX26_00543at 576.851 kb on + strand, within MPMX26_00543at 576.858 kb on + strand, within MPMX26_00543at 576.858 kb on + strand, within MPMX26_00543at 576.858 kb on + strand, within MPMX26_00543at 576.863 kb on + strand, within MPMX26_00543at 576.863 kb on + strand, within MPMX26_00543at 576.863 kb on + strand, within MPMX26_00543at 577.006 kb on + strand, within MPMX26_00543at 577.076 kb on + strand, within MPMX26_00543at 577.076 kb on + strand, within MPMX26_00543at 577.076 kb on + strand, within MPMX26_00543at 577.076 kb on + strand, within MPMX26_00543at 577.076 kb on + strand, within MPMX26_00543at 577.084 kb on - strand, within MPMX26_00543at 577.084 kb on - strand, within MPMX26_00543at 577.086 kb on + strand, within MPMX26_00543at 577.086 kb on + strand, within MPMX26_00543at 577.136 kb on + strand, within MPMX26_00543at 577.136 kb on + strand, within MPMX26_00543at 577.136 kb on + strand, within MPMX26_00543at 577.136 kb on + strand, within MPMX26_00543at 577.136 kb on + strand, within MPMX26_00543at 577.136 kb on + strand, within MPMX26_00543at 577.136 kb on + strand, within MPMX26_00543at 577.149 kb on + strand, within MPMX26_00543at 577.149 kb on + strand, within MPMX26_00543at 577.156 kb on + strand, within MPMX26_00543at 577.160 kb on + strand, within MPMX26_00543at 577.161 kb on + strand, within MPMX26_00543at 577.170 kb on + strand, within MPMX26_00543at 577.170 kb on + strand, within MPMX26_00543at 577.198 kb on + strand, within MPMX26_00543at 577.204 kb on + strand, within MPMX26_00543at 577.228 kb on + strand, within MPMX26_00543at 577.251 kb on + strand, within MPMX26_00543at 577.287 kb on + strand, within MPMX26_00543at 577.298 kb on + strand, within MPMX26_00543at 577.351 kb on + strand, within MPMX26_00543at 577.367 kb on + strand, within MPMX26_00543at 577.375 kb on + strand, within MPMX26_00543at 577.380 kb on + strand, within MPMX26_00543at 577.380 kb on + strand, within MPMX26_00543at 577.380 kb on + strand, within MPMX26_00543at 577.387 kb on + strand, within MPMX26_00543at 577.395 kb on + strand, within MPMX26_00543at 577.403 kb on + strand, within MPMX26_00543at 577.432 kb on + strand, within MPMX26_00543at 577.437 kb on + strand, within MPMX26_00543at 577.468 kb on + strand, within MPMX26_00543at 577.468 kb on + strand, within MPMX26_00543at 577.483 kb on + strand, within MPMX26_00543at 577.534 kb on + strand, within MPMX26_00543at 577.534 kb on + strand, within MPMX26_00543at 577.573 kb on + strandat 577.573 kb on + strandat 577.582 kb on - strandat 577.582 kb on - strandat 577.595 kb on + strandat 577.595 kb on + strandat 577.595 kb on + strandat 577.612 kb on + strandat 577.622 kb on + strandat 577.622 kb on + strandat 577.622 kb on + strandat 577.622 kb on + strandat 577.663 kb on + strandat 577.663 kb on + strandat 577.664 kb on + strandat 577.685 kb on + strandat 577.702 kb on + strandat 577.702 kb on + strandat 578.171 kb on + strandat 578.182 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.242 kb on + strandat 578.250 kb on - strandat 578.252 kb on + strandat 578.259 kb on + strandat 578.260 kb on - strandat 578.260 kb on - strandat 578.260 kb on - strandat 578.260 kb on - strandat 578.295 kb on + strandat 578.313 kb on + strand, within MPMX26_00545at 578.313 kb on + strand, within MPMX26_00545at 578.335 kb on + strand, within MPMX26_00545at 578.343 kb on - strand, within MPMX26_00545at 578.360 kb on + strand, within MPMX26_00545at 578.365 kb on + strand, within MPMX26_00545at 578.370 kb on + strand, within MPMX26_00545at 578.370 kb on + strand, within MPMX26_00545at 578.378 kb on - strand, within MPMX26_00545at 578.410 kb on - strand, within MPMX26_00545at 578.416 kb on - strand, within MPMX26_00545at 578.423 kb on - strand, within MPMX26_00545at 578.427 kb on + strand, within MPMX26_00545at 578.459 kb on + strand, within MPMX26_00545at 578.501 kb on - strand, within MPMX26_00545at 578.502 kb on - strand, within MPMX26_00545at 578.524 kb on + strand, within MPMX26_00545at 578.524 kb on + strand, within MPMX26_00545at 578.539 kb on + strand, within MPMX26_00545at 578.539 kb on + strand, within MPMX26_00545at 578.586 kb on + strand, within MPMX26_00545at 578.592 kb on + strand, within MPMX26_00545at 578.608 kb on + strand, within MPMX26_00545at 578.620 kb on + strand, within MPMX26_00545at 578.628 kb on - strand, within MPMX26_00545at 578.647 kb on + strand, within MPMX26_00545at 578.664 kb on + strand, within MPMX26_00545at 578.664 kb on + strand, within MPMX26_00545at 578.678 kb on + strand, within MPMX26_00545at 578.686 kb on + strand, within MPMX26_00545

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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575,281 + MPMX26_00541 0.49 +0.0
575,408 + MPMX26_00541 0.65 -0.2
575,417 + MPMX26_00541 0.66 +0.2
575,545 + MPMX26_00541 0.82 -0.1
575,591 + MPMX26_00541 0.88 +0.4
576,059 + MPMX26_00542 0.86 -0.6
576,151 + +2.1
576,189 + -1.6
576,190 + -0.8
576,202 + -2.8
576,235 + -3.0
576,235 + -1.2
576,370 + -0.4
576,405 + MPMX26_00543 0.11 +0.2
576,414 + MPMX26_00543 0.11 -1.2
576,424 + MPMX26_00543 0.12 +0.2
576,440 + MPMX26_00543 0.13 -2.2
576,440 + MPMX26_00543 0.13 -3.2
576,440 + MPMX26_00543 0.13 -0.8
576,450 + MPMX26_00543 0.14 -1.0
576,469 + MPMX26_00543 0.15 -2.4
576,511 + MPMX26_00543 0.18 -1.5
576,511 + MPMX26_00543 0.18 +0.2
576,521 + MPMX26_00543 0.19 -1.0
576,558 + MPMX26_00543 0.21 -1.9
576,558 + MPMX26_00543 0.21 -2.3
576,576 + MPMX26_00543 0.22 -3.1
576,577 + MPMX26_00543 0.22 -1.0
576,597 + MPMX26_00543 0.24 -2.3
576,607 + MPMX26_00543 0.24 -1.1
576,653 + MPMX26_00543 0.28 -2.0
576,653 + MPMX26_00543 0.28 -2.1
576,653 + MPMX26_00543 0.28 -3.0
576,699 + MPMX26_00543 0.31 -2.2
576,699 + MPMX26_00543 0.31 -1.2
576,699 + MPMX26_00543 0.31 -2.0
576,741 + MPMX26_00543 0.34 -1.0
576,850 + MPMX26_00543 0.41 +0.6
576,851 + MPMX26_00543 0.41 -2.1
576,858 + MPMX26_00543 0.42 -0.9
576,858 + MPMX26_00543 0.42 -2.6
576,858 + MPMX26_00543 0.42 -2.6
576,863 + MPMX26_00543 0.42 -0.3
576,863 + MPMX26_00543 0.42 -1.9
576,863 + MPMX26_00543 0.42 -0.4
577,006 + MPMX26_00543 0.52 +1.0
577,076 + MPMX26_00543 0.57 -1.6
577,076 + MPMX26_00543 0.57 -1.4
577,076 + MPMX26_00543 0.57 -0.0
577,076 + MPMX26_00543 0.57 -1.1
577,076 + MPMX26_00543 0.57 -1.5
577,084 - MPMX26_00543 0.57 +0.2
577,084 - MPMX26_00543 0.57 +1.6
577,086 + MPMX26_00543 0.57 -3.0
577,086 + MPMX26_00543 0.57 -1.1
577,136 + MPMX26_00543 0.61 -2.1
577,136 + MPMX26_00543 0.61 -0.9
577,136 + MPMX26_00543 0.61 -2.1
577,136 + MPMX26_00543 0.61 -0.1
577,136 + MPMX26_00543 0.61 -2.1
577,136 + MPMX26_00543 0.61 -2.1
577,136 + MPMX26_00543 0.61 -0.2
577,149 + MPMX26_00543 0.62 -1.8
577,149 + MPMX26_00543 0.62 -2.6
577,156 + MPMX26_00543 0.62 -1.6
577,160 + MPMX26_00543 0.63 -2.9
577,161 + MPMX26_00543 0.63 -3.5
577,170 + MPMX26_00543 0.63 -0.0
577,170 + MPMX26_00543 0.63 -1.8
577,198 + MPMX26_00543 0.65 -2.8
577,204 + MPMX26_00543 0.66 -1.8
577,228 + MPMX26_00543 0.67 -3.0
577,251 + MPMX26_00543 0.69 -2.3
577,287 + MPMX26_00543 0.71 -3.0
577,298 + MPMX26_00543 0.72 -0.3
577,351 + MPMX26_00543 0.76 -1.1
577,367 + MPMX26_00543 0.77 -0.7
577,375 + MPMX26_00543 0.77 -2.0
577,380 + MPMX26_00543 0.78 -1.8
577,380 + MPMX26_00543 0.78 -0.7
577,380 + MPMX26_00543 0.78 -2.5
577,387 + MPMX26_00543 0.78 -0.2
577,395 + MPMX26_00543 0.79 +1.0
577,403 + MPMX26_00543 0.79 -2.3
577,432 + MPMX26_00543 0.81 -2.5
577,437 + MPMX26_00543 0.82 -0.8
577,468 + MPMX26_00543 0.84 -1.2
577,468 + MPMX26_00543 0.84 -0.1
577,483 + MPMX26_00543 0.85 -0.8
577,534 + MPMX26_00543 0.88 -1.1
577,534 + MPMX26_00543 0.88 +0.6
577,573 + -0.7
577,573 + -0.9
577,582 - -0.4
577,582 - -0.8
577,595 + -0.5
577,595 + -1.0
577,595 + -0.4
577,612 + -0.4
577,622 + -0.1
577,622 + +0.6
577,622 + +1.0
577,622 + -1.1
577,663 + -0.5
577,663 + -0.2
577,664 + -0.1
577,685 + -0.3
577,702 + -0.4
577,702 + +1.0
578,171 + +0.5
578,182 + -0.6
578,242 + -2.9
578,242 + -1.2
578,242 + -1.8
578,242 + -2.9
578,242 + -3.3
578,242 + -2.5
578,242 + -3.7
578,242 + -2.8
578,242 + -2.8
578,250 - -1.1
578,252 + -1.4
578,259 + -3.5
578,260 - +0.6
578,260 - +0.2
578,260 - -1.0
578,260 - -0.2
578,295 + -1.8
578,313 + MPMX26_00545 0.11 +1.0
578,313 + MPMX26_00545 0.11 -3.2
578,335 + MPMX26_00545 0.13 -2.5
578,343 - MPMX26_00545 0.14 -0.4
578,360 + MPMX26_00545 0.17 -0.2
578,365 + MPMX26_00545 0.17 -2.6
578,370 + MPMX26_00545 0.18 -0.0
578,370 + MPMX26_00545 0.18 -2.2
578,378 - MPMX26_00545 0.19 +0.2
578,410 - MPMX26_00545 0.23 -0.2
578,416 - MPMX26_00545 0.23 -1.8
578,423 - MPMX26_00545 0.24 +1.6
578,427 + MPMX26_00545 0.25 -0.0
578,459 + MPMX26_00545 0.29 -1.6
578,501 - MPMX26_00545 0.34 -0.9
578,502 - MPMX26_00545 0.34 +0.6
578,524 + MPMX26_00545 0.37 -1.8
578,524 + MPMX26_00545 0.37 -0.9
578,539 + MPMX26_00545 0.39 -1.3
578,539 + MPMX26_00545 0.39 -2.3
578,586 + MPMX26_00545 0.44 -2.3
578,592 + MPMX26_00545 0.45 -2.1
578,608 + MPMX26_00545 0.47 -2.1
578,620 + MPMX26_00545 0.49 -1.1
578,628 - MPMX26_00545 0.50 +0.2
578,647 + MPMX26_00545 0.52 -0.4
578,664 + MPMX26_00545 0.54 -2.6
578,664 + MPMX26_00545 0.54 -1.8
578,678 + MPMX26_00545 0.56 -2.1
578,686 + MPMX26_00545 0.57 -1.1

Or see this region's nucleotide sequence