Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00541

Experiment: TSB with Dermcidin 1 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00539 and MPMX26_00540 are separated by 79 nucleotidesMPMX26_00540 and MPMX26_00541 are separated by 115 nucleotidesMPMX26_00541 and MPMX26_00542 are separated by 16 nucleotidesMPMX26_00542 and MPMX26_00543 are separated by 135 nucleotides MPMX26_00539: MPMX26_00539 - GTP pyrophosphokinase, at 571,623 to 573,929 _00539 MPMX26_00540: MPMX26_00540 - 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase, at 574,009 to 574,785 _00540 MPMX26_00541: MPMX26_00541 - Nucleoside triphosphate pyrophosphohydrolase, at 574,901 to 575,683 _00541 MPMX26_00542: MPMX26_00542 - hypothetical protein, at 575,700 to 576,116 _00542 MPMX26_00543: MPMX26_00543 - Poly(A) polymerase I, at 576,252 to 577,703 _00543 Position (kb) 574 575 576Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 573.908 kb on + strandat 573.910 kb on + strandat 573.910 kb on + strandat 573.910 kb on + strandat 573.910 kb on + strandat 573.914 kb on + strandat 573.915 kb on + strandat 573.920 kb on + strandat 574.113 kb on + strand, within MPMX26_00540at 574.173 kb on + strand, within MPMX26_00540at 574.988 kb on + strand, within MPMX26_00541at 575.099 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.155 kb on + strand, within MPMX26_00541at 575.200 kb on + strand, within MPMX26_00541at 575.200 kb on + strand, within MPMX26_00541at 575.200 kb on + strand, within MPMX26_00541at 575.200 kb on + strand, within MPMX26_00541at 575.281 kb on + strand, within MPMX26_00541at 575.408 kb on + strand, within MPMX26_00541at 575.417 kb on + strand, within MPMX26_00541at 575.545 kb on + strand, within MPMX26_00541at 575.591 kb on + strand, within MPMX26_00541at 576.059 kb on + strand, within MPMX26_00542at 576.151 kb on + strandat 576.189 kb on + strandat 576.190 kb on + strandat 576.202 kb on + strandat 576.235 kb on + strandat 576.235 kb on + strandat 576.370 kb on + strandat 576.405 kb on + strand, within MPMX26_00543at 576.414 kb on + strand, within MPMX26_00543at 576.424 kb on + strand, within MPMX26_00543at 576.440 kb on + strand, within MPMX26_00543at 576.440 kb on + strand, within MPMX26_00543at 576.440 kb on + strand, within MPMX26_00543at 576.450 kb on + strand, within MPMX26_00543at 576.469 kb on + strand, within MPMX26_00543at 576.511 kb on + strand, within MPMX26_00543at 576.511 kb on + strand, within MPMX26_00543at 576.521 kb on + strand, within MPMX26_00543at 576.558 kb on + strand, within MPMX26_00543at 576.558 kb on + strand, within MPMX26_00543at 576.576 kb on + strand, within MPMX26_00543at 576.577 kb on + strand, within MPMX26_00543at 576.597 kb on + strand, within MPMX26_00543at 576.607 kb on + strand, within MPMX26_00543at 576.653 kb on + strand, within MPMX26_00543at 576.653 kb on + strand, within MPMX26_00543at 576.653 kb on + strand, within MPMX26_00543

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
remove
573,908 + +0.1
573,910 + +0.1
573,910 + -0.0
573,910 + +0.0
573,910 + +0.2
573,914 + +0.5
573,915 + +0.3
573,920 + +0.1
574,113 + MPMX26_00540 0.13 +0.3
574,173 + MPMX26_00540 0.21 -0.0
574,988 + MPMX26_00541 0.11 +1.0
575,099 + MPMX26_00541 0.25 +0.6
575,116 + MPMX26_00541 0.27 +1.7
575,116 + MPMX26_00541 0.27 -0.6
575,116 + MPMX26_00541 0.27 -0.0
575,116 + MPMX26_00541 0.27 -0.6
575,116 + MPMX26_00541 0.27 +2.2
575,116 + MPMX26_00541 0.27 +0.4
575,155 + MPMX26_00541 0.32 +0.4
575,200 + MPMX26_00541 0.38 +1.2
575,200 + MPMX26_00541 0.38 -0.0
575,200 + MPMX26_00541 0.38 +0.8
575,200 + MPMX26_00541 0.38 -0.6
575,281 + MPMX26_00541 0.49 +0.0
575,408 + MPMX26_00541 0.65 -0.2
575,417 + MPMX26_00541 0.66 +0.2
575,545 + MPMX26_00541 0.82 -0.1
575,591 + MPMX26_00541 0.88 +0.4
576,059 + MPMX26_00542 0.86 -0.6
576,151 + +2.1
576,189 + -1.6
576,190 + -0.8
576,202 + -2.8
576,235 + -3.0
576,235 + -1.2
576,370 + -0.4
576,405 + MPMX26_00543 0.11 +0.2
576,414 + MPMX26_00543 0.11 -1.2
576,424 + MPMX26_00543 0.12 +0.2
576,440 + MPMX26_00543 0.13 -2.2
576,440 + MPMX26_00543 0.13 -3.2
576,440 + MPMX26_00543 0.13 -0.8
576,450 + MPMX26_00543 0.14 -1.0
576,469 + MPMX26_00543 0.15 -2.4
576,511 + MPMX26_00543 0.18 -1.5
576,511 + MPMX26_00543 0.18 +0.2
576,521 + MPMX26_00543 0.19 -1.0
576,558 + MPMX26_00543 0.21 -1.9
576,558 + MPMX26_00543 0.21 -2.3
576,576 + MPMX26_00543 0.22 -3.1
576,577 + MPMX26_00543 0.22 -1.0
576,597 + MPMX26_00543 0.24 -2.3
576,607 + MPMX26_00543 0.24 -1.1
576,653 + MPMX26_00543 0.28 -2.0
576,653 + MPMX26_00543 0.28 -2.1
576,653 + MPMX26_00543 0.28 -3.0

Or see this region's nucleotide sequence