Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00535

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00533 and MPMX26_00534 are separated by 15 nucleotidesMPMX26_00534 and MPMX26_00535 are separated by 116 nucleotidesMPMX26_00535 and MPMX26_00536 are separated by 152 nucleotides MPMX26_00533: MPMX26_00533 - 2-hydroxy-3-oxopropionate reductase, at 563,682 to 564,548 _00533 MPMX26_00534: MPMX26_00534 - Short-chain-enoyl-CoA hydratase, at 564,564 to 565,352 _00534 MPMX26_00535: MPMX26_00535 - Signal transduction histidine-protein kinase BarA, at 565,469 to 568,273 _00535 MPMX26_00536: MPMX26_00536 - Cysteine synthase B, at 568,426 to 569,352 _00536 Position (kb) 565 566 567 568 569Strain fitness (log2 ratio) -2 -1 0 1 2at 564.479 kb on - strandat 564.484 kb on - strandat 564.492 kb on - strandat 564.506 kb on - strandat 564.506 kb on - strandat 564.544 kb on - strandat 564.578 kb on - strandat 564.626 kb on - strandat 564.626 kb on - strandat 564.734 kb on - strand, within MPMX26_00534at 564.740 kb on - strand, within MPMX26_00534at 564.777 kb on - strand, within MPMX26_00534at 564.797 kb on - strand, within MPMX26_00534at 564.873 kb on - strand, within MPMX26_00534at 564.893 kb on - strand, within MPMX26_00534at 564.909 kb on - strand, within MPMX26_00534at 564.914 kb on - strand, within MPMX26_00534at 564.917 kb on - strand, within MPMX26_00534at 564.969 kb on - strand, within MPMX26_00534at 564.969 kb on - strand, within MPMX26_00534at 565.010 kb on - strand, within MPMX26_00534at 565.035 kb on - strand, within MPMX26_00534at 565.035 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.110 kb on - strand, within MPMX26_00534at 565.131 kb on - strand, within MPMX26_00534at 565.149 kb on - strand, within MPMX26_00534at 565.168 kb on - strand, within MPMX26_00534at 565.168 kb on - strand, within MPMX26_00534at 565.168 kb on - strand, within MPMX26_00534at 565.168 kb on - strand, within MPMX26_00534at 565.168 kb on - strand, within MPMX26_00534at 565.168 kb on - strand, within MPMX26_00534at 565.193 kb on - strand, within MPMX26_00534at 565.215 kb on - strand, within MPMX26_00534at 565.220 kb on - strand, within MPMX26_00534at 565.251 kb on - strand, within MPMX26_00534at 565.251 kb on - strand, within MPMX26_00534at 565.251 kb on - strand, within MPMX26_00534at 565.251 kb on - strand, within MPMX26_00534at 565.292 kb on - strandat 565.316 kb on - strandat 565.495 kb on - strandat 565.495 kb on - strandat 565.603 kb on - strandat 565.684 kb on - strandat 565.754 kb on - strand, within MPMX26_00535at 565.760 kb on - strand, within MPMX26_00535at 565.777 kb on - strand, within MPMX26_00535at 565.834 kb on - strand, within MPMX26_00535at 565.834 kb on - strand, within MPMX26_00535at 565.849 kb on - strand, within MPMX26_00535at 565.868 kb on - strand, within MPMX26_00535at 565.979 kb on - strand, within MPMX26_00535at 566.179 kb on - strand, within MPMX26_00535at 566.315 kb on - strand, within MPMX26_00535at 566.401 kb on - strand, within MPMX26_00535at 566.492 kb on - strand, within MPMX26_00535at 566.744 kb on - strand, within MPMX26_00535at 566.803 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.836 kb on - strand, within MPMX26_00535at 566.854 kb on - strand, within MPMX26_00535at 566.873 kb on - strand, within MPMX26_00535at 566.873 kb on - strand, within MPMX26_00535at 566.915 kb on - strand, within MPMX26_00535at 566.920 kb on - strand, within MPMX26_00535at 566.938 kb on - strand, within MPMX26_00535at 566.977 kb on - strand, within MPMX26_00535at 567.148 kb on - strand, within MPMX26_00535at 567.367 kb on - strand, within MPMX26_00535at 567.418 kb on - strand, within MPMX26_00535at 567.461 kb on - strand, within MPMX26_00535at 567.474 kb on - strand, within MPMX26_00535at 567.502 kb on - strand, within MPMX26_00535at 567.514 kb on - strand, within MPMX26_00535at 567.544 kb on - strand, within MPMX26_00535at 567.686 kb on - strand, within MPMX26_00535at 567.686 kb on - strand, within MPMX26_00535at 567.715 kb on - strand, within MPMX26_00535at 567.751 kb on - strand, within MPMX26_00535at 567.761 kb on - strand, within MPMX26_00535at 567.761 kb on - strand, within MPMX26_00535at 567.901 kb on - strand, within MPMX26_00535at 567.901 kb on - strand, within MPMX26_00535at 568.096 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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564,479 - +0.3
564,484 - +2.2
564,492 - -0.5
564,506 - +0.4
564,506 - -0.3
564,544 - -0.8
564,578 - +1.2
564,626 - +2.6
564,626 - +1.7
564,734 - MPMX26_00534 0.22 +0.8
564,740 - MPMX26_00534 0.22 +1.1
564,777 - MPMX26_00534 0.27 +0.5
564,797 - MPMX26_00534 0.30 +1.1
564,873 - MPMX26_00534 0.39 +1.0
564,893 - MPMX26_00534 0.42 +1.3
564,909 - MPMX26_00534 0.44 +1.1
564,914 - MPMX26_00534 0.44 +0.2
564,917 - MPMX26_00534 0.45 -0.0
564,969 - MPMX26_00534 0.51 -0.4
564,969 - MPMX26_00534 0.51 +0.2
565,010 - MPMX26_00534 0.57 -0.6
565,035 - MPMX26_00534 0.60 +0.2
565,035 - MPMX26_00534 0.60 -1.1
565,110 - MPMX26_00534 0.69 -1.1
565,110 - MPMX26_00534 0.69 -1.3
565,110 - MPMX26_00534 0.69 +0.2
565,110 - MPMX26_00534 0.69 +0.7
565,110 - MPMX26_00534 0.69 +0.9
565,110 - MPMX26_00534 0.69 -1.1
565,110 - MPMX26_00534 0.69 -2.0
565,110 - MPMX26_00534 0.69 -0.3
565,110 - MPMX26_00534 0.69 -0.3
565,110 - MPMX26_00534 0.69 +0.8
565,110 - MPMX26_00534 0.69 +0.6
565,110 - MPMX26_00534 0.69 -0.1
565,110 - MPMX26_00534 0.69 +0.7
565,110 - MPMX26_00534 0.69 +0.7
565,131 - MPMX26_00534 0.72 +0.0
565,149 - MPMX26_00534 0.74 +0.9
565,168 - MPMX26_00534 0.77 +1.8
565,168 - MPMX26_00534 0.77 -1.1
565,168 - MPMX26_00534 0.77 +0.7
565,168 - MPMX26_00534 0.77 +1.0
565,168 - MPMX26_00534 0.77 +0.8
565,168 - MPMX26_00534 0.77 -0.6
565,193 - MPMX26_00534 0.80 +0.1
565,215 - MPMX26_00534 0.83 +2.0
565,220 - MPMX26_00534 0.83 +0.9
565,251 - MPMX26_00534 0.87 -1.2
565,251 - MPMX26_00534 0.87 +1.7
565,251 - MPMX26_00534 0.87 -0.4
565,251 - MPMX26_00534 0.87 -0.2
565,292 - +0.8
565,316 - -0.7
565,495 - +0.6
565,495 - +1.2
565,603 - -0.4
565,684 - +1.0
565,754 - MPMX26_00535 0.10 -0.6
565,760 - MPMX26_00535 0.10 +0.6
565,777 - MPMX26_00535 0.11 +1.6
565,834 - MPMX26_00535 0.13 -1.9
565,834 - MPMX26_00535 0.13 +0.2
565,849 - MPMX26_00535 0.14 +0.2
565,868 - MPMX26_00535 0.14 -0.2
565,979 - MPMX26_00535 0.18 -0.2
566,179 - MPMX26_00535 0.25 -0.0
566,315 - MPMX26_00535 0.30 +0.2
566,401 - MPMX26_00535 0.33 -1.2
566,492 - MPMX26_00535 0.36 +1.6
566,744 - MPMX26_00535 0.45 -0.4
566,803 - MPMX26_00535 0.48 +0.6
566,836 - MPMX26_00535 0.49 -0.6
566,836 - MPMX26_00535 0.49 +1.6
566,836 - MPMX26_00535 0.49 +2.6
566,836 - MPMX26_00535 0.49 -1.9
566,836 - MPMX26_00535 0.49 +1.0
566,836 - MPMX26_00535 0.49 +0.6
566,836 - MPMX26_00535 0.49 +0.2
566,836 - MPMX26_00535 0.49 +1.0
566,836 - MPMX26_00535 0.49 +1.0
566,836 - MPMX26_00535 0.49 +1.0
566,836 - MPMX26_00535 0.49 -0.0
566,854 - MPMX26_00535 0.49 +0.3
566,873 - MPMX26_00535 0.50 +0.2
566,873 - MPMX26_00535 0.50 +1.0
566,915 - MPMX26_00535 0.52 +0.6
566,920 - MPMX26_00535 0.52 +1.8
566,938 - MPMX26_00535 0.52 +1.2
566,977 - MPMX26_00535 0.54 -1.0
567,148 - MPMX26_00535 0.60 -0.4
567,367 - MPMX26_00535 0.68 +1.2
567,418 - MPMX26_00535 0.69 -0.0
567,461 - MPMX26_00535 0.71 -0.0
567,474 - MPMX26_00535 0.71 +0.6
567,502 - MPMX26_00535 0.72 -0.2
567,514 - MPMX26_00535 0.73 -1.0
567,544 - MPMX26_00535 0.74 -0.9
567,686 - MPMX26_00535 0.79 +1.6
567,686 - MPMX26_00535 0.79 +0.2
567,715 - MPMX26_00535 0.80 +1.6
567,751 - MPMX26_00535 0.81 +0.2
567,761 - MPMX26_00535 0.82 -0.8
567,761 - MPMX26_00535 0.82 -1.2
567,901 - MPMX26_00535 0.87 +1.6
567,901 - MPMX26_00535 0.87 -1.2
568,096 + +1.6

Or see this region's nucleotide sequence