Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00532

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00531 and MPMX26_00532 are separated by 89 nucleotidesMPMX26_00532 and MPMX26_00533 are separated by 19 nucleotidesMPMX26_00533 and MPMX26_00534 are separated by 15 nucleotides MPMX26_00531: MPMX26_00531 - Ribosomal silencing factor RsfS, at 562,383 to 562,784 _00531 MPMX26_00532: MPMX26_00532 - Hydroxypyruvate isomerase, at 562,874 to 563,662 _00532 MPMX26_00533: MPMX26_00533 - 2-hydroxy-3-oxopropionate reductase, at 563,682 to 564,548 _00533 MPMX26_00534: MPMX26_00534 - Short-chain-enoyl-CoA hydratase, at 564,564 to 565,352 _00534 Position (kb) 562 563 564Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 562.087 kb on + strandat 562.388 kb on - strandat 562.388 kb on - strandat 562.388 kb on - strandat 562.388 kb on - strandat 562.400 kb on - strandat 562.424 kb on - strand, within MPMX26_00531at 562.463 kb on - strand, within MPMX26_00531at 562.464 kb on - strand, within MPMX26_00531at 562.466 kb on - strand, within MPMX26_00531at 562.471 kb on - strand, within MPMX26_00531at 562.471 kb on - strand, within MPMX26_00531at 562.574 kb on - strand, within MPMX26_00531at 562.594 kb on - strand, within MPMX26_00531at 562.667 kb on - strand, within MPMX26_00531at 562.677 kb on + strand, within MPMX26_00531at 562.685 kb on - strand, within MPMX26_00531at 562.685 kb on - strand, within MPMX26_00531at 562.685 kb on - strand, within MPMX26_00531at 562.715 kb on - strand, within MPMX26_00531at 562.715 kb on - strand, within MPMX26_00531at 562.717 kb on - strand, within MPMX26_00531at 562.725 kb on - strand, within MPMX26_00531at 562.758 kb on - strandat 562.780 kb on - strandat 562.812 kb on - strandat 562.824 kb on - strandat 562.824 kb on - strandat 562.824 kb on - strandat 562.849 kb on - strandat 562.927 kb on - strandat 563.016 kb on + strand, within MPMX26_00532at 563.024 kb on - strand, within MPMX26_00532at 563.030 kb on - strand, within MPMX26_00532at 563.039 kb on - strand, within MPMX26_00532at 563.096 kb on - strand, within MPMX26_00532at 563.171 kb on - strand, within MPMX26_00532at 563.183 kb on - strand, within MPMX26_00532at 563.200 kb on - strand, within MPMX26_00532at 563.308 kb on - strand, within MPMX26_00532at 563.310 kb on - strand, within MPMX26_00532at 563.311 kb on - strand, within MPMX26_00532at 563.311 kb on - strand, within MPMX26_00532at 563.389 kb on - strand, within MPMX26_00532at 563.406 kb on - strand, within MPMX26_00532at 563.406 kb on - strand, within MPMX26_00532at 563.531 kb on - strand, within MPMX26_00532at 563.620 kb on - strandat 563.639 kb on - strandat 563.649 kb on - strandat 563.694 kb on - strandat 563.712 kb on - strandat 563.766 kb on - strandat 563.766 kb on - strandat 563.771 kb on - strand, within MPMX26_00533at 563.787 kb on - strand, within MPMX26_00533at 563.796 kb on - strand, within MPMX26_00533at 563.846 kb on - strand, within MPMX26_00533at 563.847 kb on - strand, within MPMX26_00533at 563.858 kb on - strand, within MPMX26_00533at 563.963 kb on - strand, within MPMX26_00533at 563.967 kb on - strand, within MPMX26_00533at 563.967 kb on - strand, within MPMX26_00533at 563.967 kb on - strand, within MPMX26_00533at 564.024 kb on - strand, within MPMX26_00533at 564.050 kb on - strand, within MPMX26_00533at 564.050 kb on - strand, within MPMX26_00533at 564.111 kb on - strand, within MPMX26_00533at 564.178 kb on - strand, within MPMX26_00533at 564.178 kb on - strand, within MPMX26_00533at 564.180 kb on - strand, within MPMX26_00533at 564.234 kb on - strand, within MPMX26_00533at 564.308 kb on - strand, within MPMX26_00533at 564.308 kb on - strand, within MPMX26_00533at 564.414 kb on - strand, within MPMX26_00533at 564.414 kb on - strand, within MPMX26_00533at 564.414 kb on - strand, within MPMX26_00533at 564.414 kb on - strand, within MPMX26_00533at 564.414 kb on - strand, within MPMX26_00533at 564.414 kb on - strand, within MPMX26_00533at 564.414 kb on - strand, within MPMX26_00533at 564.414 kb on - strand, within MPMX26_00533at 564.434 kb on - strand, within MPMX26_00533at 564.479 kb on - strandat 564.484 kb on - strandat 564.492 kb on - strandat 564.506 kb on - strandat 564.506 kb on - strandat 564.544 kb on - strandat 564.578 kb on - strandat 564.626 kb on - strandat 564.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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562,087 + -2.1
562,388 - +0.6
562,388 - +0.0
562,388 - +0.4
562,388 - -0.1
562,400 - +0.1
562,424 - MPMX26_00531 0.10 +0.1
562,463 - MPMX26_00531 0.20 +0.6
562,464 - MPMX26_00531 0.20 +0.5
562,466 - MPMX26_00531 0.21 +0.6
562,471 - MPMX26_00531 0.22 +0.5
562,471 - MPMX26_00531 0.22 +0.1
562,574 - MPMX26_00531 0.48 -0.7
562,594 - MPMX26_00531 0.52 +0.5
562,667 - MPMX26_00531 0.71 +0.6
562,677 + MPMX26_00531 0.73 -1.2
562,685 - MPMX26_00531 0.75 +0.2
562,685 - MPMX26_00531 0.75 +0.4
562,685 - MPMX26_00531 0.75 +0.4
562,715 - MPMX26_00531 0.83 +0.2
562,715 - MPMX26_00531 0.83 +0.6
562,717 - MPMX26_00531 0.83 +0.0
562,725 - MPMX26_00531 0.85 +0.4
562,758 - +0.3
562,780 - +0.1
562,812 - -0.4
562,824 - +0.2
562,824 - +0.7
562,824 - +1.6
562,849 - +0.6
562,927 - +1.6
563,016 + MPMX26_00532 0.18 -0.3
563,024 - MPMX26_00532 0.19 -0.0
563,030 - MPMX26_00532 0.20 +0.6
563,039 - MPMX26_00532 0.21 +0.4
563,096 - MPMX26_00532 0.28 +0.7
563,171 - MPMX26_00532 0.38 +0.1
563,183 - MPMX26_00532 0.39 -2.3
563,200 - MPMX26_00532 0.41 +1.2
563,308 - MPMX26_00532 0.55 +0.4
563,310 - MPMX26_00532 0.55 +1.0
563,311 - MPMX26_00532 0.55 -0.6
563,311 - MPMX26_00532 0.55 -0.5
563,389 - MPMX26_00532 0.65 +1.2
563,406 - MPMX26_00532 0.67 +0.2
563,406 - MPMX26_00532 0.67 +1.0
563,531 - MPMX26_00532 0.83 +4.3
563,620 - -0.2
563,639 - -0.4
563,649 - +1.0
563,694 - +0.0
563,712 - +0.9
563,766 - +0.1
563,766 - -0.5
563,771 - MPMX26_00533 0.10 -0.8
563,787 - MPMX26_00533 0.12 +1.4
563,796 - MPMX26_00533 0.13 -1.2
563,846 - MPMX26_00533 0.19 -1.9
563,847 - MPMX26_00533 0.19 -0.1
563,858 - MPMX26_00533 0.20 -0.3
563,963 - MPMX26_00533 0.32 +1.1
563,967 - MPMX26_00533 0.33 +0.3
563,967 - MPMX26_00533 0.33 -0.1
563,967 - MPMX26_00533 0.33 -1.9
564,024 - MPMX26_00533 0.39 -0.2
564,050 - MPMX26_00533 0.42 +1.9
564,050 - MPMX26_00533 0.42 +1.0
564,111 - MPMX26_00533 0.49 +1.3
564,178 - MPMX26_00533 0.57 +1.3
564,178 - MPMX26_00533 0.57 +1.6
564,180 - MPMX26_00533 0.57 +0.4
564,234 - MPMX26_00533 0.64 +0.6
564,308 - MPMX26_00533 0.72 +0.5
564,308 - MPMX26_00533 0.72 -0.1
564,414 - MPMX26_00533 0.84 +1.5
564,414 - MPMX26_00533 0.84 -0.8
564,414 - MPMX26_00533 0.84 -0.6
564,414 - MPMX26_00533 0.84 +0.4
564,414 - MPMX26_00533 0.84 -2.5
564,414 - MPMX26_00533 0.84 +0.5
564,414 - MPMX26_00533 0.84 +2.2
564,414 - MPMX26_00533 0.84 +0.3
564,434 - MPMX26_00533 0.87 +0.1
564,479 - +0.3
564,484 - +2.2
564,492 - -0.5
564,506 - +0.4
564,506 - -0.3
564,544 - -0.8
564,578 - +1.2
564,626 - +2.6
564,626 - +1.7

Or see this region's nucleotide sequence