Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00530 and MPMX26_00531 are separated by 625 nucleotides MPMX26_00531 and MPMX26_00532 are separated by 89 nucleotides MPMX26_00532 and MPMX26_00533 are separated by 19 nucleotides
MPMX26_00530: MPMX26_00530 - NAD(P) transhydrogenase subunit beta, at 560,300 to 561,757
_00530
MPMX26_00531: MPMX26_00531 - Ribosomal silencing factor RsfS, at 562,383 to 562,784
_00531
MPMX26_00532: MPMX26_00532 - Hydroxypyruvate isomerase, at 562,874 to 563,662
_00532
MPMX26_00533: MPMX26_00533 - 2-hydroxy-3-oxopropionate reductase, at 563,682 to 564,548
_00533
Position (kb) 562
563 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 561.545 kb on + strand, within MPMX26_00530 at 561.749 kb on + strand at 562.087 kb on + strand at 562.388 kb on - strand at 562.388 kb on - strand at 562.388 kb on - strand at 562.388 kb on - strand at 562.400 kb on - strand at 562.424 kb on - strand, within MPMX26_00531 at 562.463 kb on - strand, within MPMX26_00531 at 562.464 kb on - strand, within MPMX26_00531 at 562.466 kb on - strand, within MPMX26_00531 at 562.471 kb on - strand, within MPMX26_00531 at 562.471 kb on - strand, within MPMX26_00531 at 562.574 kb on - strand, within MPMX26_00531 at 562.594 kb on - strand, within MPMX26_00531 at 562.667 kb on - strand, within MPMX26_00531 at 562.677 kb on + strand, within MPMX26_00531 at 562.685 kb on - strand, within MPMX26_00531 at 562.685 kb on - strand, within MPMX26_00531 at 562.685 kb on - strand, within MPMX26_00531 at 562.715 kb on - strand, within MPMX26_00531 at 562.715 kb on - strand, within MPMX26_00531 at 562.717 kb on - strand, within MPMX26_00531 at 562.725 kb on - strand, within MPMX26_00531 at 562.758 kb on - strand at 562.780 kb on - strand at 562.812 kb on - strand at 562.824 kb on - strand at 562.824 kb on - strand at 562.824 kb on - strand at 562.849 kb on - strand at 562.927 kb on - strand at 563.016 kb on + strand, within MPMX26_00532 at 563.024 kb on - strand, within MPMX26_00532 at 563.030 kb on - strand, within MPMX26_00532 at 563.039 kb on - strand, within MPMX26_00532 at 563.096 kb on - strand, within MPMX26_00532 at 563.171 kb on - strand, within MPMX26_00532 at 563.183 kb on - strand, within MPMX26_00532 at 563.200 kb on - strand, within MPMX26_00532 at 563.308 kb on - strand, within MPMX26_00532 at 563.310 kb on - strand, within MPMX26_00532 at 563.311 kb on - strand, within MPMX26_00532 at 563.311 kb on - strand, within MPMX26_00532 at 563.389 kb on - strand, within MPMX26_00532 at 563.406 kb on - strand, within MPMX26_00532 at 563.406 kb on - strand, within MPMX26_00532 at 563.531 kb on - strand, within MPMX26_00532 at 563.620 kb on - strand at 563.639 kb on - strand at 563.649 kb on - strand at 563.694 kb on - strand at 563.712 kb on - strand at 563.766 kb on - strand at 563.766 kb on - strand at 563.771 kb on - strand, within MPMX26_00533
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 561,545 + MPMX26_00530 0.85 -0.0 561,749 + -0.2 562,087 + -2.1 562,388 - +0.6 562,388 - +0.0 562,388 - +0.4 562,388 - -0.1 562,400 - +0.1 562,424 - MPMX26_00531 0.10 +0.1 562,463 - MPMX26_00531 0.20 +0.6 562,464 - MPMX26_00531 0.20 +0.5 562,466 - MPMX26_00531 0.21 +0.6 562,471 - MPMX26_00531 0.22 +0.5 562,471 - MPMX26_00531 0.22 +0.1 562,574 - MPMX26_00531 0.48 -0.7 562,594 - MPMX26_00531 0.52 +0.5 562,667 - MPMX26_00531 0.71 +0.6 562,677 + MPMX26_00531 0.73 -1.2 562,685 - MPMX26_00531 0.75 +0.2 562,685 - MPMX26_00531 0.75 +0.4 562,685 - MPMX26_00531 0.75 +0.4 562,715 - MPMX26_00531 0.83 +0.2 562,715 - MPMX26_00531 0.83 +0.6 562,717 - MPMX26_00531 0.83 +0.0 562,725 - MPMX26_00531 0.85 +0.4 562,758 - +0.3 562,780 - +0.1 562,812 - -0.4 562,824 - +0.2 562,824 - +0.7 562,824 - +1.6 562,849 - +0.6 562,927 - +1.6 563,016 + MPMX26_00532 0.18 -0.3 563,024 - MPMX26_00532 0.19 -0.0 563,030 - MPMX26_00532 0.20 +0.6 563,039 - MPMX26_00532 0.21 +0.4 563,096 - MPMX26_00532 0.28 +0.7 563,171 - MPMX26_00532 0.38 +0.1 563,183 - MPMX26_00532 0.39 -2.3 563,200 - MPMX26_00532 0.41 +1.2 563,308 - MPMX26_00532 0.55 +0.4 563,310 - MPMX26_00532 0.55 +1.0 563,311 - MPMX26_00532 0.55 -0.6 563,311 - MPMX26_00532 0.55 -0.5 563,389 - MPMX26_00532 0.65 +1.2 563,406 - MPMX26_00532 0.67 +0.2 563,406 - MPMX26_00532 0.67 +1.0 563,531 - MPMX26_00532 0.83 +4.3 563,620 - -0.2 563,639 - -0.4 563,649 - +1.0 563,694 - +0.0 563,712 - +0.9 563,766 - +0.1 563,766 - -0.5 563,771 - MPMX26_00533 0.10 -0.8
Or see this region's nucleotide sequence