Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00366

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00365 and MPMX26_00366 are separated by 97 nucleotidesMPMX26_00366 and MPMX26_00367 are separated by 122 nucleotidesMPMX26_00367 and MPMX26_00368 are separated by 69 nucleotides MPMX26_00365: MPMX26_00365 - DNA topoisomerase 1, at 395,512 to 398,154 _00365 MPMX26_00366: MPMX26_00366 - hypothetical protein, at 398,252 to 399,010 _00366 MPMX26_00367: MPMX26_00367 - hypothetical protein, at 399,133 to 399,702 _00367 MPMX26_00368: MPMX26_00368 - Glycerate 2-kinase, at 399,772 to 400,926 _00368 Position (kb) 398 399 400Strain fitness (log2 ratio) -1 0 1 2at 398.117 kb on + strandat 398.124 kb on + strandat 398.132 kb on + strandat 398.132 kb on + strandat 398.134 kb on + strandat 398.143 kb on + strandat 398.398 kb on + strand, within MPMX26_00366at 398.421 kb on - strand, within MPMX26_00366at 398.438 kb on + strand, within MPMX26_00366at 398.848 kb on + strand, within MPMX26_00366at 399.151 kb on + strandat 399.304 kb on + strand, within MPMX26_00367at 399.598 kb on + strand, within MPMX26_00367at 399.645 kb on + strand, within MPMX26_00367

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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398,117 + -0.1
398,124 + +0.8
398,132 + +0.6
398,132 + +0.8
398,134 + +0.6
398,143 + +0.1
398,398 + MPMX26_00366 0.19 -0.2
398,421 - MPMX26_00366 0.22 -0.4
398,438 + MPMX26_00366 0.25 -0.7
398,848 + MPMX26_00366 0.79 +0.1
399,151 + -0.6
399,304 + MPMX26_00367 0.30 -0.7
399,598 + MPMX26_00367 0.82 +1.8
399,645 + MPMX26_00367 0.90 +0.9

Or see this region's nucleotide sequence