Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00356

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00355 and MPMX26_00356 are separated by 141 nucleotidesMPMX26_00356 and MPMX26_00357 are separated by 199 nucleotides MPMX26_00355: MPMX26_00355 - hypothetical protein, at 384,252 to 385,637 _00355 MPMX26_00356: MPMX26_00356 - Aspartate-semialdehyde dehydrogenase, at 385,779 to 386,897 _00356 MPMX26_00357: MPMX26_00357 - hypothetical protein, at 387,097 to 388,218 _00357 Position (kb) 385 386 387Strain fitness (log2 ratio) -2 -1 0 1 2 3at 384.786 kb on - strand, within MPMX26_00355at 384.901 kb on - strand, within MPMX26_00355at 384.901 kb on - strand, within MPMX26_00355at 384.903 kb on - strand, within MPMX26_00355at 384.920 kb on - strand, within MPMX26_00355at 384.920 kb on - strand, within MPMX26_00355at 384.920 kb on - strand, within MPMX26_00355at 384.930 kb on - strand, within MPMX26_00355at 384.933 kb on - strand, within MPMX26_00355at 384.933 kb on - strand, within MPMX26_00355at 384.933 kb on - strand, within MPMX26_00355at 384.933 kb on - strand, within MPMX26_00355at 384.933 kb on - strand, within MPMX26_00355at 384.944 kb on - strand, within MPMX26_00355at 384.945 kb on - strand, within MPMX26_00355at 384.945 kb on - strand, within MPMX26_00355at 384.957 kb on - strand, within MPMX26_00355at 385.073 kb on - strand, within MPMX26_00355at 385.073 kb on - strand, within MPMX26_00355at 385.110 kb on - strand, within MPMX26_00355at 385.152 kb on - strand, within MPMX26_00355at 385.167 kb on - strand, within MPMX26_00355at 385.250 kb on - strand, within MPMX26_00355at 385.349 kb on - strand, within MPMX26_00355at 385.349 kb on - strand, within MPMX26_00355at 385.357 kb on - strand, within MPMX26_00355at 385.365 kb on - strand, within MPMX26_00355at 385.381 kb on - strand, within MPMX26_00355at 385.383 kb on - strand, within MPMX26_00355at 385.388 kb on - strand, within MPMX26_00355at 385.388 kb on - strand, within MPMX26_00355at 385.388 kb on - strand, within MPMX26_00355at 385.425 kb on - strand, within MPMX26_00355at 385.454 kb on - strand, within MPMX26_00355at 385.471 kb on - strand, within MPMX26_00355at 385.476 kb on - strand, within MPMX26_00355at 385.490 kb on - strand, within MPMX26_00355at 385.490 kb on - strand, within MPMX26_00355at 385.500 kb on - strandat 385.500 kb on - strandat 385.532 kb on - strandat 385.538 kb on - strandat 385.607 kb on - strandat 385.658 kb on - strandat 386.062 kb on + strand, within MPMX26_00356at 387.005 kb on + strandat 387.005 kb on + strandat 387.005 kb on + strandat 387.005 kb on + strandat 387.005 kb on + strandat 387.199 kb on + strandat 387.242 kb on + strand, within MPMX26_00357at 387.271 kb on + strand, within MPMX26_00357at 387.297 kb on + strand, within MPMX26_00357at 387.361 kb on - strand, within MPMX26_00357at 387.363 kb on + strand, within MPMX26_00357at 387.402 kb on + strand, within MPMX26_00357at 387.574 kb on + strand, within MPMX26_00357at 387.574 kb on + strand, within MPMX26_00357at 387.574 kb on + strand, within MPMX26_00357at 387.574 kb on + strand, within MPMX26_00357at 387.577 kb on + strand, within MPMX26_00357at 387.577 kb on + strand, within MPMX26_00357at 387.637 kb on + strand, within MPMX26_00357at 387.643 kb on + strand, within MPMX26_00357at 387.730 kb on + strand, within MPMX26_00357at 387.759 kb on + strand, within MPMX26_00357at 387.774 kb on + strand, within MPMX26_00357at 387.787 kb on + strand, within MPMX26_00357at 387.799 kb on + strand, within MPMX26_00357at 387.805 kb on - strand, within MPMX26_00357at 387.820 kb on + strand, within MPMX26_00357at 387.820 kb on + strand, within MPMX26_00357at 387.831 kb on + strand, within MPMX26_00357at 387.834 kb on + strand, within MPMX26_00357

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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384,786 - MPMX26_00355 0.39 +0.8
384,901 - MPMX26_00355 0.47 +0.4
384,901 - MPMX26_00355 0.47 -1.0
384,903 - MPMX26_00355 0.47 -0.2
384,920 - MPMX26_00355 0.48 +1.4
384,920 - MPMX26_00355 0.48 -1.7
384,920 - MPMX26_00355 0.48 -0.3
384,930 - MPMX26_00355 0.49 -2.2
384,933 - MPMX26_00355 0.49 -0.4
384,933 - MPMX26_00355 0.49 +0.6
384,933 - MPMX26_00355 0.49 +0.1
384,933 - MPMX26_00355 0.49 +2.3
384,933 - MPMX26_00355 0.49 +0.3
384,944 - MPMX26_00355 0.50 +1.0
384,945 - MPMX26_00355 0.50 +1.0
384,945 - MPMX26_00355 0.50 +2.3
384,957 - MPMX26_00355 0.51 -1.7
385,073 - MPMX26_00355 0.59 -0.7
385,073 - MPMX26_00355 0.59 -0.1
385,110 - MPMX26_00355 0.62 +0.4
385,152 - MPMX26_00355 0.65 -0.9
385,167 - MPMX26_00355 0.66 -0.5
385,250 - MPMX26_00355 0.72 -0.1
385,349 - MPMX26_00355 0.79 -0.8
385,349 - MPMX26_00355 0.79 +0.0
385,357 - MPMX26_00355 0.80 +0.8
385,365 - MPMX26_00355 0.80 -0.1
385,381 - MPMX26_00355 0.81 +0.8
385,383 - MPMX26_00355 0.82 +0.0
385,388 - MPMX26_00355 0.82 -0.3
385,388 - MPMX26_00355 0.82 -0.9
385,388 - MPMX26_00355 0.82 +0.4
385,425 - MPMX26_00355 0.85 +0.1
385,454 - MPMX26_00355 0.87 +0.4
385,471 - MPMX26_00355 0.88 -1.2
385,476 - MPMX26_00355 0.88 +0.0
385,490 - MPMX26_00355 0.89 +0.3
385,490 - MPMX26_00355 0.89 -0.2
385,500 - +0.9
385,500 - -0.0
385,532 - +0.1
385,538 - +0.9
385,607 - -0.8
385,658 - +3.6
386,062 + MPMX26_00356 0.25 +0.7
387,005 + +1.7
387,005 + -0.4
387,005 + +0.4
387,005 + +1.1
387,005 + +0.7
387,199 + -0.1
387,242 + MPMX26_00357 0.13 +1.0
387,271 + MPMX26_00357 0.16 +0.4
387,297 + MPMX26_00357 0.18 +1.0
387,361 - MPMX26_00357 0.24 -0.4
387,363 + MPMX26_00357 0.24 +1.0
387,402 + MPMX26_00357 0.27 -0.1
387,574 + MPMX26_00357 0.43 +1.0
387,574 + MPMX26_00357 0.43 +0.1
387,574 + MPMX26_00357 0.43 +0.8
387,574 + MPMX26_00357 0.43 -0.2
387,577 + MPMX26_00357 0.43 +0.3
387,577 + MPMX26_00357 0.43 +0.3
387,637 + MPMX26_00357 0.48 +0.8
387,643 + MPMX26_00357 0.49 +0.3
387,730 + MPMX26_00357 0.56 +0.4
387,759 + MPMX26_00357 0.59 +0.1
387,774 + MPMX26_00357 0.60 -0.1
387,787 + MPMX26_00357 0.61 +0.9
387,799 + MPMX26_00357 0.63 +0.0
387,805 - MPMX26_00357 0.63 -1.0
387,820 + MPMX26_00357 0.64 +0.5
387,820 + MPMX26_00357 0.64 +0.8
387,831 + MPMX26_00357 0.65 -0.5
387,834 + MPMX26_00357 0.66 +0.9

Or see this region's nucleotide sequence