Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00329 and MPMX26_00330 are separated by 2 nucleotides MPMX26_00330 and MPMX26_00331 are separated by 65 nucleotides MPMX26_00331 and MPMX26_00332 are separated by 12 nucleotides
MPMX26_00329: MPMX26_00329 - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit, at 358,368 to 358,694
_00329
MPMX26_00330: MPMX26_00330 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 358,697 to 359,512
_00330
MPMX26_00331: MPMX26_00331 - 2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2-dioxygenase, at 359,578 to 360,537
_00331
MPMX26_00332: MPMX26_00332 - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component, at 360,550 to 361,773
_00332
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.897 kb on + strand, within MPMX26_00330 at 359.065 kb on + strand, within MPMX26_00330 at 359.065 kb on + strand, within MPMX26_00330 at 359.103 kb on + strand, within MPMX26_00330 at 359.443 kb on + strand at 359.527 kb on + strand at 359.600 kb on - strand at 359.632 kb on + strand at 360.266 kb on - strand, within MPMX26_00331 at 360.418 kb on + strand, within MPMX26_00331 at 360.439 kb on + strand, within MPMX26_00331 at 360.557 kb on - strand at 360.764 kb on + strand, within MPMX26_00332 at 360.814 kb on + strand, within MPMX26_00332 at 360.858 kb on + strand, within MPMX26_00332 at 361.081 kb on + strand, within MPMX26_00332 at 361.105 kb on + strand, within MPMX26_00332 at 361.105 kb on + strand, within MPMX26_00332 at 361.105 kb on + strand, within MPMX26_00332 at 361.138 kb on + strand, within MPMX26_00332 at 361.249 kb on + strand, within MPMX26_00332 at 361.295 kb on + strand, within MPMX26_00332 at 361.346 kb on - strand, within MPMX26_00332 at 361.384 kb on + strand, within MPMX26_00332 at 361.384 kb on + strand, within MPMX26_00332 at 361.407 kb on + strand, within MPMX26_00332 at 361.506 kb on + strand, within MPMX26_00332 at 361.506 kb on + strand, within MPMX26_00332 at 361.511 kb on + strand, within MPMX26_00332 at 361.511 kb on + strand, within MPMX26_00332
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 358,897 + MPMX26_00330 0.25 -0.2 359,065 + MPMX26_00330 0.45 +1.0 359,065 + MPMX26_00330 0.45 +0.6 359,103 + MPMX26_00330 0.50 +1.0 359,443 + +1.6 359,527 + +2.6 359,600 - -0.2 359,632 + +2.6 360,266 - MPMX26_00331 0.72 +0.3 360,418 + MPMX26_00331 0.88 +0.4 360,439 + MPMX26_00331 0.90 -2.3 360,557 - +1.0 360,764 + MPMX26_00332 0.17 -0.9 360,814 + MPMX26_00332 0.22 +1.7 360,858 + MPMX26_00332 0.25 +1.7 361,081 + MPMX26_00332 0.43 +0.0 361,105 + MPMX26_00332 0.45 -0.2 361,105 + MPMX26_00332 0.45 -0.9 361,105 + MPMX26_00332 0.45 -0.1 361,138 + MPMX26_00332 0.48 +0.3 361,249 + MPMX26_00332 0.57 +0.6 361,295 + MPMX26_00332 0.61 +0.4 361,346 - MPMX26_00332 0.65 +0.3 361,384 + MPMX26_00332 0.68 +0.3 361,384 + MPMX26_00332 0.68 -0.9 361,407 + MPMX26_00332 0.70 +0.3 361,506 + MPMX26_00332 0.78 -2.2 361,506 + MPMX26_00332 0.78 -0.7 361,511 + MPMX26_00332 0.79 +1.2 361,511 + MPMX26_00332 0.79 +1.6
Or see this region's nucleotide sequence