Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00306

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00305 and MPMX26_00306 are separated by 250 nucleotidesMPMX26_00306 and MPMX26_00307 are separated by 30 nucleotidesMPMX26_00307 and MPMX26_00308 are separated by 178 nucleotides MPMX26_00305: MPMX26_00305 - protein kinase UbiB, at 332,899 to 334,209 _00305 MPMX26_00306: MPMX26_00306 - Multidrug resistance protein NorM, at 334,460 to 335,815 _00306 MPMX26_00307: MPMX26_00307 - hypothetical protein, at 335,846 to 336,304 _00307 MPMX26_00308: MPMX26_00308 - Heme chaperone HemW, at 336,483 to 337,589 _00308 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1 2at 333.481 kb on - strand, within MPMX26_00305at 333.481 kb on - strand, within MPMX26_00305at 333.580 kb on - strand, within MPMX26_00305at 333.580 kb on - strand, within MPMX26_00305at 333.580 kb on - strand, within MPMX26_00305at 333.582 kb on - strand, within MPMX26_00305at 333.639 kb on - strand, within MPMX26_00305at 333.663 kb on - strand, within MPMX26_00305at 333.733 kb on + strand, within MPMX26_00305at 333.752 kb on - strand, within MPMX26_00305at 333.772 kb on - strand, within MPMX26_00305at 333.831 kb on - strand, within MPMX26_00305at 333.853 kb on - strand, within MPMX26_00305at 333.919 kb on - strand, within MPMX26_00305at 333.925 kb on - strand, within MPMX26_00305at 333.925 kb on - strand, within MPMX26_00305at 333.931 kb on - strand, within MPMX26_00305at 333.955 kb on - strand, within MPMX26_00305at 333.955 kb on - strand, within MPMX26_00305at 333.955 kb on - strand, within MPMX26_00305at 333.955 kb on - strand, within MPMX26_00305at 333.955 kb on - strand, within MPMX26_00305at 333.955 kb on - strand, within MPMX26_00305at 334.011 kb on - strand, within MPMX26_00305at 334.050 kb on - strand, within MPMX26_00305at 334.106 kb on - strandat 334.116 kb on - strandat 334.129 kb on - strandat 334.129 kb on - strandat 334.540 kb on - strandat 334.562 kb on - strandat 334.567 kb on - strandat 334.577 kb on - strandat 334.577 kb on - strandat 334.586 kb on - strandat 334.621 kb on - strand, within MPMX26_00306at 334.644 kb on - strand, within MPMX26_00306at 334.679 kb on - strand, within MPMX26_00306at 334.697 kb on - strand, within MPMX26_00306at 334.697 kb on - strand, within MPMX26_00306at 334.697 kb on - strand, within MPMX26_00306at 334.697 kb on - strand, within MPMX26_00306at 334.697 kb on - strand, within MPMX26_00306at 334.697 kb on - strand, within MPMX26_00306at 334.702 kb on - strand, within MPMX26_00306at 334.715 kb on - strand, within MPMX26_00306at 334.756 kb on - strand, within MPMX26_00306at 334.783 kb on - strand, within MPMX26_00306at 334.783 kb on - strand, within MPMX26_00306at 334.800 kb on - strand, within MPMX26_00306at 334.827 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.831 kb on - strand, within MPMX26_00306at 334.870 kb on - strand, within MPMX26_00306at 334.870 kb on - strand, within MPMX26_00306at 334.870 kb on - strand, within MPMX26_00306at 334.870 kb on - strand, within MPMX26_00306at 334.870 kb on - strand, within MPMX26_00306at 334.870 kb on - strand, within MPMX26_00306at 334.872 kb on - strand, within MPMX26_00306at 334.872 kb on - strand, within MPMX26_00306at 334.872 kb on - strand, within MPMX26_00306at 334.872 kb on - strand, within MPMX26_00306at 334.872 kb on - strand, within MPMX26_00306at 334.872 kb on - strand, within MPMX26_00306at 334.872 kb on - strand, within MPMX26_00306at 334.907 kb on - strand, within MPMX26_00306at 334.907 kb on - strand, within MPMX26_00306at 334.907 kb on - strand, within MPMX26_00306at 334.907 kb on - strand, within MPMX26_00306at 334.907 kb on - strand, within MPMX26_00306at 334.907 kb on - strand, within MPMX26_00306at 334.907 kb on - strand, within MPMX26_00306at 334.930 kb on - strand, within MPMX26_00306at 334.942 kb on - strand, within MPMX26_00306at 334.942 kb on - strand, within MPMX26_00306at 334.976 kb on - strand, within MPMX26_00306at 335.002 kb on - strand, within MPMX26_00306at 335.012 kb on - strand, within MPMX26_00306at 335.114 kb on - strand, within MPMX26_00306at 335.114 kb on - strand, within MPMX26_00306at 335.114 kb on - strand, within MPMX26_00306at 335.142 kb on - strand, within MPMX26_00306at 335.143 kb on - strand, within MPMX26_00306at 335.149 kb on - strand, within MPMX26_00306at 335.174 kb on - strand, within MPMX26_00306at 335.182 kb on - strand, within MPMX26_00306at 335.205 kb on - strand, within MPMX26_00306at 335.251 kb on - strand, within MPMX26_00306at 335.251 kb on - strand, within MPMX26_00306at 335.251 kb on - strand, within MPMX26_00306at 335.251 kb on - strand, within MPMX26_00306at 335.251 kb on - strand, within MPMX26_00306at 335.251 kb on - strand, within MPMX26_00306at 335.251 kb on - strand, within MPMX26_00306at 335.308 kb on - strand, within MPMX26_00306at 335.329 kb on - strand, within MPMX26_00306at 335.353 kb on - strand, within MPMX26_00306at 335.360 kb on - strand, within MPMX26_00306at 335.361 kb on - strand, within MPMX26_00306at 335.372 kb on - strand, within MPMX26_00306at 335.372 kb on - strand, within MPMX26_00306at 335.374 kb on - strand, within MPMX26_00306at 335.389 kb on - strand, within MPMX26_00306at 335.389 kb on - strand, within MPMX26_00306at 335.433 kb on - strand, within MPMX26_00306at 335.438 kb on - strand, within MPMX26_00306at 335.438 kb on - strand, within MPMX26_00306at 335.438 kb on - strand, within MPMX26_00306at 335.494 kb on - strand, within MPMX26_00306at 335.494 kb on - strand, within MPMX26_00306at 335.494 kb on - strand, within MPMX26_00306at 335.513 kb on - strand, within MPMX26_00306at 335.585 kb on - strand, within MPMX26_00306at 335.590 kb on - strand, within MPMX26_00306at 335.591 kb on - strand, within MPMX26_00306at 335.667 kb on - strand, within MPMX26_00306at 335.708 kb on - strandat 335.717 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.727 kb on - strandat 335.732 kb on - strandat 335.732 kb on - strandat 335.732 kb on - strandat 335.800 kb on - strandat 335.847 kb on - strandat 335.857 kb on - strandat 335.857 kb on - strandat 335.865 kb on - strandat 335.869 kb on - strandat 335.871 kb on - strandat 335.987 kb on - strand, within MPMX26_00307at 336.252 kb on - strand, within MPMX26_00307at 336.441 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.485 kb on + strandat 336.495 kb on + strandat 336.495 kb on + strandat 336.495 kb on + strandat 336.495 kb on + strandat 336.495 kb on + strandat 336.495 kb on + strandat 336.495 kb on + strandat 336.596 kb on + strand, within MPMX26_00308at 336.596 kb on + strand, within MPMX26_00308at 336.596 kb on + strand, within MPMX26_00308at 336.606 kb on + strand, within MPMX26_00308at 336.613 kb on + strand, within MPMX26_00308at 336.613 kb on + strand, within MPMX26_00308at 336.613 kb on + strand, within MPMX26_00308at 336.623 kb on + strand, within MPMX26_00308at 336.623 kb on + strand, within MPMX26_00308at 336.623 kb on + strand, within MPMX26_00308at 336.633 kb on + strand, within MPMX26_00308at 336.633 kb on + strand, within MPMX26_00308at 336.655 kb on + strand, within MPMX26_00308at 336.655 kb on + strand, within MPMX26_00308at 336.737 kb on + strand, within MPMX26_00308at 336.771 kb on + strand, within MPMX26_00308

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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333,481 - MPMX26_00305 0.44 +0.3
333,481 - MPMX26_00305 0.44 +0.4
333,580 - MPMX26_00305 0.52 +0.9
333,580 - MPMX26_00305 0.52 +0.3
333,580 - MPMX26_00305 0.52 -0.3
333,582 - MPMX26_00305 0.52 -1.1
333,639 - MPMX26_00305 0.56 +1.0
333,663 - MPMX26_00305 0.58 -0.2
333,733 + MPMX26_00305 0.64 +0.5
333,752 - MPMX26_00305 0.65 -0.1
333,772 - MPMX26_00305 0.67 -0.1
333,831 - MPMX26_00305 0.71 -0.7
333,853 - MPMX26_00305 0.73 -0.9
333,919 - MPMX26_00305 0.78 -0.4
333,925 - MPMX26_00305 0.78 -0.7
333,925 - MPMX26_00305 0.78 +0.3
333,931 - MPMX26_00305 0.79 -0.1
333,955 - MPMX26_00305 0.81 -1.6
333,955 - MPMX26_00305 0.81 -0.3
333,955 - MPMX26_00305 0.81 +0.3
333,955 - MPMX26_00305 0.81 +0.5
333,955 - MPMX26_00305 0.81 +0.8
333,955 - MPMX26_00305 0.81 +0.3
334,011 - MPMX26_00305 0.85 +0.1
334,050 - MPMX26_00305 0.88 +0.3
334,106 - +0.5
334,116 - -0.0
334,129 - -1.2
334,129 - -0.2
334,540 - -0.4
334,562 - -0.2
334,567 - -0.5
334,577 - +1.0
334,577 - -0.5
334,586 - +0.3
334,621 - MPMX26_00306 0.12 +0.2
334,644 - MPMX26_00306 0.14 +0.2
334,679 - MPMX26_00306 0.16 -0.1
334,697 - MPMX26_00306 0.17 -0.2
334,697 - MPMX26_00306 0.17 -1.1
334,697 - MPMX26_00306 0.17 -0.5
334,697 - MPMX26_00306 0.17 +0.1
334,697 - MPMX26_00306 0.17 +0.2
334,697 - MPMX26_00306 0.17 +0.6
334,702 - MPMX26_00306 0.18 -0.5
334,715 - MPMX26_00306 0.19 -0.3
334,756 - MPMX26_00306 0.22 +0.0
334,783 - MPMX26_00306 0.24 -0.4
334,783 - MPMX26_00306 0.24 -0.6
334,800 - MPMX26_00306 0.25 +0.6
334,827 - MPMX26_00306 0.27 +1.0
334,831 - MPMX26_00306 0.27 +0.3
334,831 - MPMX26_00306 0.27 -0.4
334,831 - MPMX26_00306 0.27 +0.1
334,831 - MPMX26_00306 0.27 +0.3
334,831 - MPMX26_00306 0.27 +0.4
334,831 - MPMX26_00306 0.27 +0.5
334,831 - MPMX26_00306 0.27 -0.7
334,831 - MPMX26_00306 0.27 -1.0
334,831 - MPMX26_00306 0.27 +0.6
334,831 - MPMX26_00306 0.27 -1.4
334,870 - MPMX26_00306 0.30 +0.1
334,870 - MPMX26_00306 0.30 +0.0
334,870 - MPMX26_00306 0.30 +0.4
334,870 - MPMX26_00306 0.30 -0.4
334,870 - MPMX26_00306 0.30 -0.0
334,870 - MPMX26_00306 0.30 +0.9
334,872 - MPMX26_00306 0.30 +0.5
334,872 - MPMX26_00306 0.30 -0.3
334,872 - MPMX26_00306 0.30 -0.3
334,872 - MPMX26_00306 0.30 +1.3
334,872 - MPMX26_00306 0.30 -0.9
334,872 - MPMX26_00306 0.30 +1.1
334,872 - MPMX26_00306 0.30 +0.9
334,907 - MPMX26_00306 0.33 +0.8
334,907 - MPMX26_00306 0.33 +1.2
334,907 - MPMX26_00306 0.33 +0.6
334,907 - MPMX26_00306 0.33 +2.3
334,907 - MPMX26_00306 0.33 -0.9
334,907 - MPMX26_00306 0.33 -0.2
334,907 - MPMX26_00306 0.33 -0.1
334,930 - MPMX26_00306 0.35 -1.4
334,942 - MPMX26_00306 0.36 +2.2
334,942 - MPMX26_00306 0.36 -1.0
334,976 - MPMX26_00306 0.38 +0.6
335,002 - MPMX26_00306 0.40 +1.0
335,012 - MPMX26_00306 0.41 +0.5
335,114 - MPMX26_00306 0.48 -0.3
335,114 - MPMX26_00306 0.48 -1.8
335,114 - MPMX26_00306 0.48 +0.2
335,142 - MPMX26_00306 0.50 +0.1
335,143 - MPMX26_00306 0.50 +2.2
335,149 - MPMX26_00306 0.51 +0.0
335,174 - MPMX26_00306 0.53 -0.6
335,182 - MPMX26_00306 0.53 -0.2
335,205 - MPMX26_00306 0.55 +1.3
335,251 - MPMX26_00306 0.58 +0.0
335,251 - MPMX26_00306 0.58 +0.5
335,251 - MPMX26_00306 0.58 -1.0
335,251 - MPMX26_00306 0.58 -0.5
335,251 - MPMX26_00306 0.58 -0.4
335,251 - MPMX26_00306 0.58 +0.2
335,251 - MPMX26_00306 0.58 -1.3
335,308 - MPMX26_00306 0.63 -0.2
335,329 - MPMX26_00306 0.64 -0.1
335,353 - MPMX26_00306 0.66 +1.4
335,360 - MPMX26_00306 0.66 +0.3
335,361 - MPMX26_00306 0.66 +1.0
335,372 - MPMX26_00306 0.67 +0.9
335,372 - MPMX26_00306 0.67 -0.7
335,374 - MPMX26_00306 0.67 +0.2
335,389 - MPMX26_00306 0.69 -1.1
335,389 - MPMX26_00306 0.69 +0.0
335,433 - MPMX26_00306 0.72 +0.3
335,438 - MPMX26_00306 0.72 -0.4
335,438 - MPMX26_00306 0.72 +0.1
335,438 - MPMX26_00306 0.72 +0.6
335,494 - MPMX26_00306 0.76 -0.1
335,494 - MPMX26_00306 0.76 -1.2
335,494 - MPMX26_00306 0.76 +0.2
335,513 - MPMX26_00306 0.78 +0.1
335,585 - MPMX26_00306 0.83 -0.3
335,590 - MPMX26_00306 0.83 +0.0
335,591 - MPMX26_00306 0.83 -0.7
335,667 - MPMX26_00306 0.89 -1.1
335,708 - -0.0
335,717 - +0.2
335,727 - -0.1
335,727 - +1.3
335,727 - -0.4
335,727 - +1.0
335,727 - +0.7
335,727 - -0.3
335,727 - -2.0
335,727 - +0.4
335,727 - +0.4
335,727 - +0.1
335,727 - +0.1
335,727 - +1.2
335,727 - +1.0
335,732 - +0.1
335,732 - +0.5
335,732 - +1.6
335,800 - +0.0
335,847 - -0.7
335,857 - +1.6
335,857 - -0.9
335,865 - +0.0
335,869 - +0.9
335,871 - -0.5
335,987 - MPMX26_00307 0.31 -0.6
336,252 - MPMX26_00307 0.88 -0.6
336,441 + +1.0
336,485 + -0.2
336,485 + -0.3
336,485 + -0.3
336,485 + +0.1
336,485 + -0.3
336,485 + +0.4
336,485 + -0.4
336,485 + +0.1
336,485 + -0.8
336,485 + -0.9
336,485 + +0.5
336,485 + -0.2
336,485 + +0.5
336,485 + +0.1
336,485 + +0.3
336,485 + -0.5
336,485 + +0.7
336,485 + -0.0
336,485 + -0.1
336,485 + -1.1
336,485 + +0.1
336,485 + -0.9
336,485 + -0.7
336,485 + -0.1
336,485 + -0.8
336,495 + -0.7
336,495 + -0.4
336,495 + +0.1
336,495 + +0.4
336,495 + -0.5
336,495 + -1.0
336,495 + +0.8
336,596 + MPMX26_00308 0.10 -1.5
336,596 + MPMX26_00308 0.10 +2.6
336,596 + MPMX26_00308 0.10 -2.0
336,606 + MPMX26_00308 0.11 -0.5
336,613 + MPMX26_00308 0.12 +1.6
336,613 + MPMX26_00308 0.12 -2.5
336,613 + MPMX26_00308 0.12 +0.7
336,623 + MPMX26_00308 0.13 -0.6
336,623 + MPMX26_00308 0.13 +0.3
336,623 + MPMX26_00308 0.13 -0.2
336,633 + MPMX26_00308 0.14 +0.1
336,633 + MPMX26_00308 0.14 +1.9
336,655 + MPMX26_00308 0.16 -0.6
336,655 + MPMX26_00308 0.16 -1.7
336,737 + MPMX26_00308 0.23 +0.9
336,771 + MPMX26_00308 0.26 -0.1

Or see this region's nucleotide sequence