Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00274 and MPMX26_00275 are separated by 241 nucleotides MPMX26_00275 and MPMX26_00276 are separated by 96 nucleotides
MPMX26_00274: MPMX26_00274 - 30S ribosomal protein S15, at 302,761 to 303,030
_00274
MPMX26_00275: MPMX26_00275 - Polyribonucleotide nucleotidyltransferase, at 303,272 to 305,371
_00275
MPMX26_00276: MPMX26_00276 - Cobalt/magnesium transport protein CorA, at 305,468 to 306,706
_00276
Position (kb) 303
304
305
306 Strain fitness (log2 ratio) -2
-1
0
1 at 302.359 kb on + strand at 302.367 kb on + strand at 302.502 kb on - strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.602 kb on + strand at 302.610 kb on - strand at 303.021 kb on + strand at 303.088 kb on + strand at 303.177 kb on + strand at 303.200 kb on + strand at 303.205 kb on + strand at 303.222 kb on + strand at 303.229 kb on + strand at 303.229 kb on + strand at 305.116 kb on + strand, within MPMX26_00275 at 305.116 kb on + strand, within MPMX26_00275 at 305.116 kb on + strand, within MPMX26_00275 at 305.131 kb on + strand, within MPMX26_00275 at 305.131 kb on + strand, within MPMX26_00275 at 305.131 kb on + strand, within MPMX26_00275 at 305.842 kb on + strand, within MPMX26_00276 at 306.046 kb on - strand, within MPMX26_00276
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 302,359 + -0.2 302,367 + -0.0 302,502 - -0.3 302,602 + +0.2 302,602 + -1.6 302,602 + +0.4 302,602 + -0.2 302,602 + +1.1 302,602 + +0.4 302,602 + -1.9 302,602 + +1.3 302,602 + -0.6 302,602 + +0.4 302,602 + -0.7 302,610 - -0.2 303,021 + -0.7 303,088 + -0.7 303,177 + -0.7 303,200 + +0.0 303,205 + +0.6 303,222 + -0.9 303,229 + +0.0 303,229 + -0.7 305,116 + MPMX26_00275 0.88 -1.5 305,116 + MPMX26_00275 0.88 +0.3 305,116 + MPMX26_00275 0.88 +0.3 305,131 + MPMX26_00275 0.89 -0.6 305,131 + MPMX26_00275 0.89 +0.0 305,131 + MPMX26_00275 0.89 -0.4 305,842 + MPMX26_00276 0.30 +0.0 306,046 - MPMX26_00276 0.47 +0.6
Or see this region's nucleotide sequence