Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00238

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00236 and MPMX26_00237 are separated by 65 nucleotidesMPMX26_00237 and MPMX26_00238 overlap by 8 nucleotidesMPMX26_00238 and MPMX26_00239 are separated by 335 nucleotides MPMX26_00236: MPMX26_00236 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 256,762 to 257,775 _00236 MPMX26_00237: MPMX26_00237 - Putative pre-16S rRNA nuclease, at 257,841 to 258,284 _00237 MPMX26_00238: MPMX26_00238 - hypothetical protein, at 258,277 to 258,831 _00238 MPMX26_00239: MPMX26_00239 - DNA repair protein RecN, at 259,167 to 260,828 _00239 Position (kb) 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 257.287 kb on - strand, within MPMX26_00236at 257.296 kb on + strand, within MPMX26_00236at 257.321 kb on + strand, within MPMX26_00236at 257.341 kb on + strand, within MPMX26_00236at 257.351 kb on + strand, within MPMX26_00236at 257.440 kb on + strand, within MPMX26_00236at 257.453 kb on - strand, within MPMX26_00236at 257.460 kb on + strand, within MPMX26_00236at 257.509 kb on - strand, within MPMX26_00236at 257.527 kb on + strand, within MPMX26_00236at 257.535 kb on - strand, within MPMX26_00236at 257.540 kb on - strand, within MPMX26_00236at 257.540 kb on - strand, within MPMX26_00236at 257.571 kb on + strand, within MPMX26_00236at 257.580 kb on + strand, within MPMX26_00236at 257.602 kb on + strand, within MPMX26_00236at 257.604 kb on + strand, within MPMX26_00236at 257.612 kb on + strand, within MPMX26_00236at 257.612 kb on + strand, within MPMX26_00236at 257.725 kb on - strandat 257.772 kb on - strandat 257.854 kb on - strandat 257.854 kb on - strandat 257.854 kb on - strandat 257.894 kb on + strand, within MPMX26_00237at 258.288 kb on - strandat 258.349 kb on - strand, within MPMX26_00238at 258.361 kb on - strand, within MPMX26_00238at 258.409 kb on - strand, within MPMX26_00238at 258.457 kb on - strand, within MPMX26_00238at 258.457 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.462 kb on - strand, within MPMX26_00238at 258.467 kb on - strand, within MPMX26_00238at 258.472 kb on - strand, within MPMX26_00238at 258.490 kb on - strand, within MPMX26_00238at 258.490 kb on - strand, within MPMX26_00238at 258.490 kb on - strand, within MPMX26_00238at 258.490 kb on - strand, within MPMX26_00238at 258.536 kb on - strand, within MPMX26_00238at 258.612 kb on - strand, within MPMX26_00238at 258.635 kb on - strand, within MPMX26_00238at 258.635 kb on - strand, within MPMX26_00238at 258.685 kb on - strand, within MPMX26_00238at 258.716 kb on - strand, within MPMX26_00238at 258.735 kb on - strand, within MPMX26_00238at 258.745 kb on - strand, within MPMX26_00238at 258.745 kb on - strand, within MPMX26_00238at 258.754 kb on - strand, within MPMX26_00238at 258.754 kb on - strand, within MPMX26_00238at 258.837 kb on - strandat 258.837 kb on - strandat 258.837 kb on - strandat 258.837 kb on - strandat 258.963 kb on - strandat 258.963 kb on - strandat 259.027 kb on - strandat 259.040 kb on - strandat 259.054 kb on - strandat 259.054 kb on - strandat 259.054 kb on - strandat 259.054 kb on - strandat 259.074 kb on - strandat 259.149 kb on - strandat 259.188 kb on - strandat 259.188 kb on - strandat 259.207 kb on - strandat 259.207 kb on - strandat 259.207 kb on - strandat 259.209 kb on - strandat 259.216 kb on - strandat 259.217 kb on - strandat 259.249 kb on - strandat 259.274 kb on - strandat 259.300 kb on - strandat 259.319 kb on - strandat 259.348 kb on - strand, within MPMX26_00239at 259.380 kb on - strand, within MPMX26_00239at 259.405 kb on - strand, within MPMX26_00239at 259.405 kb on - strand, within MPMX26_00239at 259.405 kb on - strand, within MPMX26_00239at 259.405 kb on - strand, within MPMX26_00239at 259.433 kb on - strand, within MPMX26_00239at 259.433 kb on - strand, within MPMX26_00239at 259.446 kb on + strand, within MPMX26_00239at 259.454 kb on - strand, within MPMX26_00239at 259.454 kb on - strand, within MPMX26_00239at 259.478 kb on - strand, within MPMX26_00239at 259.518 kb on - strand, within MPMX26_00239at 259.528 kb on - strand, within MPMX26_00239at 259.533 kb on - strand, within MPMX26_00239at 259.533 kb on - strand, within MPMX26_00239at 259.572 kb on - strand, within MPMX26_00239at 259.572 kb on - strand, within MPMX26_00239at 259.612 kb on - strand, within MPMX26_00239at 259.618 kb on - strand, within MPMX26_00239at 259.619 kb on - strand, within MPMX26_00239at 259.619 kb on - strand, within MPMX26_00239at 259.619 kb on - strand, within MPMX26_00239at 259.630 kb on - strand, within MPMX26_00239at 259.632 kb on - strand, within MPMX26_00239at 259.632 kb on - strand, within MPMX26_00239at 259.632 kb on - strand, within MPMX26_00239at 259.632 kb on - strand, within MPMX26_00239at 259.632 kb on - strand, within MPMX26_00239at 259.642 kb on - strand, within MPMX26_00239at 259.692 kb on - strand, within MPMX26_00239at 259.692 kb on - strand, within MPMX26_00239at 259.692 kb on - strand, within MPMX26_00239at 259.692 kb on - strand, within MPMX26_00239at 259.723 kb on - strand, within MPMX26_00239at 259.723 kb on - strand, within MPMX26_00239at 259.759 kb on - strand, within MPMX26_00239at 259.778 kb on - strand, within MPMX26_00239at 259.778 kb on - strand, within MPMX26_00239at 259.791 kb on - strand, within MPMX26_00239at 259.791 kb on - strand, within MPMX26_00239at 259.791 kb on - strand, within MPMX26_00239

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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257,287 - MPMX26_00236 0.52 -0.5
257,296 + MPMX26_00236 0.53 +0.6
257,321 + MPMX26_00236 0.55 +0.4
257,341 + MPMX26_00236 0.57 +1.3
257,351 + MPMX26_00236 0.58 +0.3
257,440 + MPMX26_00236 0.67 +2.6
257,453 - MPMX26_00236 0.68 +0.1
257,460 + MPMX26_00236 0.69 +1.6
257,509 - MPMX26_00236 0.74 +1.6
257,527 + MPMX26_00236 0.75 +0.0
257,535 - MPMX26_00236 0.76 +0.4
257,540 - MPMX26_00236 0.77 -1.3
257,540 - MPMX26_00236 0.77 +0.0
257,571 + MPMX26_00236 0.80 +2.0
257,580 + MPMX26_00236 0.81 +0.6
257,602 + MPMX26_00236 0.83 -0.5
257,604 + MPMX26_00236 0.83 +0.4
257,612 + MPMX26_00236 0.84 +1.0
257,612 + MPMX26_00236 0.84 +1.4
257,725 - +0.2
257,772 - -0.9
257,854 - -1.1
257,854 - +0.6
257,854 - -0.2
257,894 + MPMX26_00237 0.12 -0.6
258,288 - -1.6
258,349 - MPMX26_00238 0.13 -0.6
258,361 - MPMX26_00238 0.15 +0.3
258,409 - MPMX26_00238 0.24 -0.9
258,457 - MPMX26_00238 0.32 -1.1
258,457 - MPMX26_00238 0.32 -0.2
258,462 - MPMX26_00238 0.33 -2.0
258,462 - MPMX26_00238 0.33 -0.8
258,462 - MPMX26_00238 0.33 -0.8
258,462 - MPMX26_00238 0.33 +0.9
258,462 - MPMX26_00238 0.33 -1.4
258,462 - MPMX26_00238 0.33 -1.2
258,462 - MPMX26_00238 0.33 -1.6
258,462 - MPMX26_00238 0.33 -0.2
258,462 - MPMX26_00238 0.33 -0.3
258,462 - MPMX26_00238 0.33 +0.1
258,462 - MPMX26_00238 0.33 +0.1
258,467 - MPMX26_00238 0.34 -0.2
258,472 - MPMX26_00238 0.35 -0.7
258,490 - MPMX26_00238 0.38 -0.6
258,490 - MPMX26_00238 0.38 -2.2
258,490 - MPMX26_00238 0.38 -1.0
258,490 - MPMX26_00238 0.38 -0.8
258,536 - MPMX26_00238 0.47 -0.6
258,612 - MPMX26_00238 0.60 -1.7
258,635 - MPMX26_00238 0.65 +0.6
258,635 - MPMX26_00238 0.65 +0.3
258,685 - MPMX26_00238 0.74 -2.2
258,716 - MPMX26_00238 0.79 +1.0
258,735 - MPMX26_00238 0.83 -0.8
258,745 - MPMX26_00238 0.84 +0.1
258,745 - MPMX26_00238 0.84 -3.0
258,754 - MPMX26_00238 0.86 -1.4
258,754 - MPMX26_00238 0.86 -2.3
258,837 - +0.9
258,837 - -1.6
258,837 - +1.0
258,837 - +1.3
258,963 - -0.4
258,963 - +0.7
259,027 - +2.2
259,040 - +0.8
259,054 - +1.8
259,054 - +0.9
259,054 - +0.7
259,054 - -0.2
259,074 - +0.1
259,149 - +0.0
259,188 - +1.8
259,188 - +0.8
259,207 - +0.6
259,207 - -0.6
259,207 - -1.1
259,209 - -0.2
259,216 - -0.2
259,217 - +1.0
259,249 - -1.1
259,274 - +0.6
259,300 - +0.1
259,319 - +0.0
259,348 - MPMX26_00239 0.11 +1.0
259,380 - MPMX26_00239 0.13 +0.7
259,405 - MPMX26_00239 0.14 -0.6
259,405 - MPMX26_00239 0.14 +0.4
259,405 - MPMX26_00239 0.14 +0.3
259,405 - MPMX26_00239 0.14 +0.1
259,433 - MPMX26_00239 0.16 +0.2
259,433 - MPMX26_00239 0.16 -0.1
259,446 + MPMX26_00239 0.17 +2.0
259,454 - MPMX26_00239 0.17 +0.5
259,454 - MPMX26_00239 0.17 -0.1
259,478 - MPMX26_00239 0.19 -3.0
259,518 - MPMX26_00239 0.21 +0.3
259,528 - MPMX26_00239 0.22 +0.9
259,533 - MPMX26_00239 0.22 +0.8
259,533 - MPMX26_00239 0.22 -0.2
259,572 - MPMX26_00239 0.24 -1.0
259,572 - MPMX26_00239 0.24 +0.6
259,612 - MPMX26_00239 0.27 +0.6
259,618 - MPMX26_00239 0.27 +0.6
259,619 - MPMX26_00239 0.27 -0.7
259,619 - MPMX26_00239 0.27 -0.2
259,619 - MPMX26_00239 0.27 +0.3
259,630 - MPMX26_00239 0.28 -0.6
259,632 - MPMX26_00239 0.28 -0.1
259,632 - MPMX26_00239 0.28 -0.4
259,632 - MPMX26_00239 0.28 +0.2
259,632 - MPMX26_00239 0.28 -0.4
259,632 - MPMX26_00239 0.28 +0.6
259,642 - MPMX26_00239 0.29 -0.2
259,692 - MPMX26_00239 0.32 +0.5
259,692 - MPMX26_00239 0.32 +0.7
259,692 - MPMX26_00239 0.32 -0.9
259,692 - MPMX26_00239 0.32 -0.0
259,723 - MPMX26_00239 0.33 -0.7
259,723 - MPMX26_00239 0.33 -1.3
259,759 - MPMX26_00239 0.36 +0.1
259,778 - MPMX26_00239 0.37 -0.1
259,778 - MPMX26_00239 0.37 -0.0
259,791 - MPMX26_00239 0.38 -0.7
259,791 - MPMX26_00239 0.38 +0.6
259,791 - MPMX26_00239 0.38 -0.4

Or see this region's nucleotide sequence