Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00163

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00162 and MPMX26_00163 are separated by 24 nucleotidesMPMX26_00163 and MPMX26_00164 are separated by 14 nucleotidesMPMX26_00164 and MPMX26_00165 are separated by 218 nucleotides MPMX26_00162: MPMX26_00162 - Regulatory protein AtoC, at 175,019 to 176,434 _00162 MPMX26_00163: MPMX26_00163 - Adaptive-response sensory-kinase SasA, at 176,459 to 178,024 _00163 MPMX26_00164: MPMX26_00164 - Response regulator GacA, at 178,039 to 178,674 _00164 MPMX26_00165: MPMX26_00165 - hypothetical protein, at 178,893 to 179,924 _00165 Position (kb) 176 177 178 179Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 175.502 kb on - strand, within MPMX26_00162at 175.517 kb on - strand, within MPMX26_00162at 175.594 kb on - strand, within MPMX26_00162at 175.688 kb on - strand, within MPMX26_00162at 175.688 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.754 kb on - strand, within MPMX26_00162at 175.754 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.823 kb on - strand, within MPMX26_00162at 175.837 kb on - strand, within MPMX26_00162at 175.837 kb on - strand, within MPMX26_00162at 175.855 kb on - strand, within MPMX26_00162at 175.877 kb on - strand, within MPMX26_00162at 175.904 kb on - strand, within MPMX26_00162at 175.904 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.943 kb on - strand, within MPMX26_00162at 175.945 kb on - strand, within MPMX26_00162at 175.945 kb on - strand, within MPMX26_00162at 175.956 kb on - strand, within MPMX26_00162at 176.015 kb on - strand, within MPMX26_00162at 176.044 kb on - strand, within MPMX26_00162at 176.066 kb on - strand, within MPMX26_00162at 176.072 kb on - strand, within MPMX26_00162at 176.072 kb on - strand, within MPMX26_00162at 176.075 kb on - strand, within MPMX26_00162at 176.087 kb on - strand, within MPMX26_00162at 176.110 kb on - strand, within MPMX26_00162at 176.216 kb on - strand, within MPMX26_00162at 176.238 kb on - strand, within MPMX26_00162at 176.264 kb on - strand, within MPMX26_00162at 176.269 kb on - strand, within MPMX26_00162at 176.387 kb on - strandat 176.387 kb on - strandat 176.582 kb on - strandat 176.911 kb on - strand, within MPMX26_00163at 176.923 kb on - strand, within MPMX26_00163at 176.923 kb on - strand, within MPMX26_00163at 177.157 kb on - strand, within MPMX26_00163at 177.157 kb on - strand, within MPMX26_00163at 177.203 kb on - strand, within MPMX26_00163at 177.238 kb on - strand, within MPMX26_00163at 177.238 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.275 kb on - strand, within MPMX26_00163at 177.277 kb on - strand, within MPMX26_00163at 177.277 kb on - strand, within MPMX26_00163at 177.282 kb on - strand, within MPMX26_00163at 177.342 kb on - strand, within MPMX26_00163at 177.502 kb on - strand, within MPMX26_00163at 177.502 kb on - strand, within MPMX26_00163at 177.504 kb on - strand, within MPMX26_00163at 177.516 kb on - strand, within MPMX26_00163at 177.516 kb on - strand, within MPMX26_00163at 177.516 kb on - strand, within MPMX26_00163at 177.521 kb on - strand, within MPMX26_00163at 177.521 kb on - strand, within MPMX26_00163at 177.574 kb on - strand, within MPMX26_00163at 177.728 kb on - strand, within MPMX26_00163at 177.728 kb on - strand, within MPMX26_00163at 177.728 kb on - strand, within MPMX26_00163at 177.728 kb on - strand, within MPMX26_00163at 177.728 kb on - strand, within MPMX26_00163at 177.728 kb on - strand, within MPMX26_00163at 177.728 kb on - strand, within MPMX26_00163at 177.728 kb on - strand, within MPMX26_00163at 177.753 kb on - strand, within MPMX26_00163at 177.768 kb on - strand, within MPMX26_00163at 177.773 kb on - strand, within MPMX26_00163at 177.842 kb on - strand, within MPMX26_00163at 177.852 kb on - strand, within MPMX26_00163at 177.903 kb on - strandat 177.954 kb on - strandat 177.960 kb on + strandat 177.960 kb on + strandat 177.960 kb on + strandat 177.963 kb on + strandat 177.963 kb on + strandat 177.963 kb on + strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.971 kb on + strandat 177.971 kb on - strandat 177.971 kb on - strandat 177.971 kb on - strandat 177.971 kb on - strandat 177.973 kb on - strandat 177.973 kb on - strandat 177.973 kb on - strandat 177.973 kb on - strandat 177.973 kb on - strandat 177.989 kb on - strandat 177.990 kb on + strandat 177.990 kb on + strandat 177.998 kb on - strandat 178.009 kb on + strandat 178.009 kb on + strandat 178.017 kb on - strandat 178.017 kb on - strandat 178.017 kb on - strandat 178.137 kb on - strand, within MPMX26_00164at 178.138 kb on - strand, within MPMX26_00164at 178.138 kb on - strand, within MPMX26_00164at 178.138 kb on - strand, within MPMX26_00164at 178.148 kb on - strand, within MPMX26_00164at 178.148 kb on - strand, within MPMX26_00164at 178.189 kb on - strand, within MPMX26_00164at 178.189 kb on - strand, within MPMX26_00164at 178.197 kb on - strand, within MPMX26_00164at 178.197 kb on - strand, within MPMX26_00164at 178.206 kb on - strand, within MPMX26_00164at 178.246 kb on - strand, within MPMX26_00164at 178.254 kb on - strand, within MPMX26_00164at 178.271 kb on - strand, within MPMX26_00164at 178.323 kb on - strand, within MPMX26_00164at 178.324 kb on - strand, within MPMX26_00164at 178.369 kb on - strand, within MPMX26_00164at 178.377 kb on - strand, within MPMX26_00164at 178.377 kb on - strand, within MPMX26_00164at 178.390 kb on - strand, within MPMX26_00164at 178.396 kb on - strand, within MPMX26_00164at 178.413 kb on - strand, within MPMX26_00164at 178.419 kb on - strand, within MPMX26_00164at 178.445 kb on - strand, within MPMX26_00164at 178.488 kb on - strand, within MPMX26_00164at 178.488 kb on - strand, within MPMX26_00164at 178.499 kb on - strand, within MPMX26_00164at 178.507 kb on - strand, within MPMX26_00164at 178.514 kb on - strand, within MPMX26_00164at 178.573 kb on - strand, within MPMX26_00164at 178.573 kb on - strand, within MPMX26_00164at 178.574 kb on - strand, within MPMX26_00164at 178.583 kb on - strand, within MPMX26_00164at 178.583 kb on - strand, within MPMX26_00164at 178.598 kb on - strand, within MPMX26_00164at 178.599 kb on - strand, within MPMX26_00164at 178.634 kb on - strandat 178.756 kb on + strandat 178.928 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.938 kb on + strandat 178.938 kb on + strandat 178.938 kb on + strandat 178.963 kb on + strandat 178.966 kb on + strandat 178.966 kb on + strandat 178.968 kb on + strandat 178.987 kb on + strandat 178.987 kb on + strandat 178.987 kb on + strandat 178.990 kb on + strandat 178.990 kb on + strandat 179.000 kb on + strand, within MPMX26_00165at 179.013 kb on + strand, within MPMX26_00165

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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175,502 - MPMX26_00162 0.34 -0.7
175,517 - MPMX26_00162 0.35 +0.6
175,594 - MPMX26_00162 0.41 +1.5
175,688 - MPMX26_00162 0.47 +0.8
175,688 - MPMX26_00162 0.47 -1.0
175,703 - MPMX26_00162 0.48 +1.2
175,703 - MPMX26_00162 0.48 +1.8
175,703 - MPMX26_00162 0.48 +0.4
175,754 - MPMX26_00162 0.52 +1.5
175,754 - MPMX26_00162 0.52 +0.6
175,774 - MPMX26_00162 0.53 +1.5
175,774 - MPMX26_00162 0.53 +0.4
175,774 - MPMX26_00162 0.53 +0.4
175,774 - MPMX26_00162 0.53 +0.4
175,823 - MPMX26_00162 0.57 +0.6
175,837 - MPMX26_00162 0.58 -1.3
175,837 - MPMX26_00162 0.58 +0.1
175,855 - MPMX26_00162 0.59 +0.9
175,877 - MPMX26_00162 0.61 +0.5
175,904 - MPMX26_00162 0.62 -0.0
175,904 - MPMX26_00162 0.62 -0.1
175,918 - MPMX26_00162 0.63 +1.2
175,918 - MPMX26_00162 0.63 +0.4
175,918 - MPMX26_00162 0.63 +0.5
175,918 - MPMX26_00162 0.63 +0.2
175,918 - MPMX26_00162 0.63 +0.7
175,918 - MPMX26_00162 0.63 -1.2
175,918 - MPMX26_00162 0.63 +0.4
175,918 - MPMX26_00162 0.63 +0.8
175,943 - MPMX26_00162 0.65 +0.6
175,945 - MPMX26_00162 0.65 +0.3
175,945 - MPMX26_00162 0.65 +0.8
175,956 - MPMX26_00162 0.66 +0.9
176,015 - MPMX26_00162 0.70 -0.0
176,044 - MPMX26_00162 0.72 -0.6
176,066 - MPMX26_00162 0.74 +1.0
176,072 - MPMX26_00162 0.74 +0.3
176,072 - MPMX26_00162 0.74 -0.1
176,075 - MPMX26_00162 0.75 +0.7
176,087 - MPMX26_00162 0.75 +1.0
176,110 - MPMX26_00162 0.77 +0.6
176,216 - MPMX26_00162 0.85 -0.0
176,238 - MPMX26_00162 0.86 +0.9
176,264 - MPMX26_00162 0.88 -0.1
176,269 - MPMX26_00162 0.88 +0.9
176,387 - -0.1
176,387 - -1.6
176,582 - +1.1
176,911 - MPMX26_00163 0.29 +1.0
176,923 - MPMX26_00163 0.30 +0.6
176,923 - MPMX26_00163 0.30 +1.4
177,157 - MPMX26_00163 0.45 -0.6
177,157 - MPMX26_00163 0.45 -0.4
177,203 - MPMX26_00163 0.48 +0.5
177,238 - MPMX26_00163 0.50 +0.6
177,238 - MPMX26_00163 0.50 +1.1
177,272 - MPMX26_00163 0.52 +1.0
177,272 - MPMX26_00163 0.52 +0.6
177,272 - MPMX26_00163 0.52 -0.2
177,272 - MPMX26_00163 0.52 +0.1
177,272 - MPMX26_00163 0.52 +3.4
177,275 - MPMX26_00163 0.52 +0.6
177,277 - MPMX26_00163 0.52 -0.1
177,277 - MPMX26_00163 0.52 +0.4
177,282 - MPMX26_00163 0.53 -0.7
177,342 - MPMX26_00163 0.56 +2.6
177,502 - MPMX26_00163 0.67 +1.0
177,502 - MPMX26_00163 0.67 +0.9
177,504 - MPMX26_00163 0.67 +0.1
177,516 - MPMX26_00163 0.67 +0.1
177,516 - MPMX26_00163 0.67 +0.0
177,516 - MPMX26_00163 0.67 -1.0
177,521 - MPMX26_00163 0.68 +0.9
177,521 - MPMX26_00163 0.68 +0.1
177,574 - MPMX26_00163 0.71 +0.9
177,728 - MPMX26_00163 0.81 +0.8
177,728 - MPMX26_00163 0.81 +0.7
177,728 - MPMX26_00163 0.81 -1.2
177,728 - MPMX26_00163 0.81 +0.1
177,728 - MPMX26_00163 0.81 +0.0
177,728 - MPMX26_00163 0.81 +1.0
177,728 - MPMX26_00163 0.81 +0.4
177,728 - MPMX26_00163 0.81 +0.4
177,753 - MPMX26_00163 0.83 +1.8
177,768 - MPMX26_00163 0.84 +0.0
177,773 - MPMX26_00163 0.84 +0.2
177,842 - MPMX26_00163 0.88 +1.4
177,852 - MPMX26_00163 0.89 +1.6
177,903 - +0.4
177,954 - +0.9
177,960 + +1.2
177,960 + -0.4
177,960 + +3.5
177,963 + +1.4
177,963 + -1.1
177,963 + +1.3
177,968 - +0.8
177,968 - +0.3
177,968 - +0.4
177,968 - +0.3
177,968 - +0.9
177,968 - +1.7
177,968 - -0.2
177,971 + -1.0
177,971 - +0.5
177,971 - +1.8
177,971 - +1.6
177,971 - -0.5
177,973 - +0.9
177,973 - -0.1
177,973 - +2.9
177,973 - +0.3
177,973 - +2.0
177,989 - +0.0
177,990 + +0.8
177,990 + +0.6
177,998 - +0.6
178,009 + +1.0
178,009 + +2.6
178,017 - -0.6
178,017 - +1.6
178,017 - +1.4
178,137 - MPMX26_00164 0.15 +2.2
178,138 - MPMX26_00164 0.16 -1.5
178,138 - MPMX26_00164 0.16 -0.4
178,138 - MPMX26_00164 0.16 -0.7
178,148 - MPMX26_00164 0.17 -2.1
178,148 - MPMX26_00164 0.17 -1.0
178,189 - MPMX26_00164 0.24 -2.1
178,189 - MPMX26_00164 0.24 +1.0
178,197 - MPMX26_00164 0.25 +2.3
178,197 - MPMX26_00164 0.25 +1.3
178,206 - MPMX26_00164 0.26 -1.1
178,246 - MPMX26_00164 0.33 -0.8
178,254 - MPMX26_00164 0.34 -2.8
178,271 - MPMX26_00164 0.36 -0.7
178,323 - MPMX26_00164 0.45 +0.4
178,324 - MPMX26_00164 0.45 +2.6
178,369 - MPMX26_00164 0.52 -1.2
178,377 - MPMX26_00164 0.53 -2.3
178,377 - MPMX26_00164 0.53 +1.6
178,390 - MPMX26_00164 0.55 +0.6
178,396 - MPMX26_00164 0.56 -0.6
178,413 - MPMX26_00164 0.59 -1.5
178,419 - MPMX26_00164 0.60 +0.9
178,445 - MPMX26_00164 0.64 +0.6
178,488 - MPMX26_00164 0.71 -1.4
178,488 - MPMX26_00164 0.71 -1.4
178,499 - MPMX26_00164 0.72 -1.6
178,507 - MPMX26_00164 0.74 -1.6
178,514 - MPMX26_00164 0.75 +0.2
178,573 - MPMX26_00164 0.84 +0.4
178,573 - MPMX26_00164 0.84 +0.0
178,574 - MPMX26_00164 0.84 +0.6
178,583 - MPMX26_00164 0.86 -1.0
178,583 - MPMX26_00164 0.86 +0.0
178,598 - MPMX26_00164 0.88 -1.6
178,599 - MPMX26_00164 0.88 -0.7
178,634 - -1.0
178,756 + -1.7
178,928 + -1.7
178,933 + -1.6
178,933 + -0.9
178,933 + -1.5
178,933 + -2.2
178,933 + -1.9
178,933 + -0.7
178,933 + -0.6
178,933 + -1.5
178,933 + -1.7
178,938 + -2.5
178,938 + -1.6
178,938 + -1.3
178,963 + -0.7
178,966 + -2.6
178,966 + -2.2
178,968 + -3.3
178,987 + -1.9
178,987 + -2.1
178,987 + -1.7
178,990 + -0.6
178,990 + -2.1
179,000 + MPMX26_00165 0.10 -3.2
179,013 + MPMX26_00165 0.12 -3.1

Or see this region's nucleotide sequence