Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00049

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00047 and MPMX26_00048 are separated by 17 nucleotidesMPMX26_00048 and MPMX26_00049 are separated by 2 nucleotidesMPMX26_00049 and MPMX26_00050 are separated by 362 nucleotides MPMX26_00047: MPMX26_00047 - Tyrosine-protein kinase ptk, at 50,629 to 52,812 _00047 MPMX26_00048: MPMX26_00048 - Low molecular weight protein-tyrosine-phosphatase Ptp, at 52,830 to 53,258 _00048 MPMX26_00049: MPMX26_00049 - hypothetical protein, at 53,261 to 54,340 _00049 MPMX26_00050: MPMX26_00050 - UDP-N-acetyl-D-glucosamine 6-dehydrogenase, at 54,703 to 55,980 _00050 Position (kb) 53 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 52.279 kb on - strand, within MPMX26_00047at 52.393 kb on - strand, within MPMX26_00047at 52.421 kb on - strand, within MPMX26_00047at 52.475 kb on - strand, within MPMX26_00047at 52.685 kb on - strandat 52.690 kb on - strandat 52.701 kb on - strandat 52.708 kb on - strandat 52.796 kb on - strandat 52.858 kb on - strandat 52.858 kb on - strandat 52.858 kb on - strandat 52.858 kb on - strandat 52.879 kb on - strand, within MPMX26_00048at 52.879 kb on - strand, within MPMX26_00048at 52.886 kb on - strand, within MPMX26_00048at 52.906 kb on - strand, within MPMX26_00048at 52.944 kb on - strand, within MPMX26_00048at 52.954 kb on - strand, within MPMX26_00048at 52.954 kb on - strand, within MPMX26_00048at 52.980 kb on - strand, within MPMX26_00048at 52.980 kb on - strand, within MPMX26_00048at 52.980 kb on - strand, within MPMX26_00048at 52.980 kb on - strand, within MPMX26_00048at 52.980 kb on - strand, within MPMX26_00048at 52.980 kb on - strand, within MPMX26_00048at 52.980 kb on - strand, within MPMX26_00048at 52.980 kb on - strand, within MPMX26_00048at 53.008 kb on - strand, within MPMX26_00048at 53.008 kb on - strand, within MPMX26_00048at 53.016 kb on - strand, within MPMX26_00048at 53.016 kb on - strand, within MPMX26_00048at 53.016 kb on - strand, within MPMX26_00048at 53.087 kb on - strand, within MPMX26_00048at 53.094 kb on - strand, within MPMX26_00048at 53.094 kb on - strand, within MPMX26_00048at 53.106 kb on - strand, within MPMX26_00048at 53.106 kb on - strand, within MPMX26_00048at 53.111 kb on - strand, within MPMX26_00048at 53.111 kb on - strand, within MPMX26_00048at 53.125 kb on - strand, within MPMX26_00048at 53.312 kb on - strandat 53.344 kb on - strandat 53.358 kb on - strandat 53.363 kb on - strandat 53.445 kb on - strand, within MPMX26_00049at 53.445 kb on - strand, within MPMX26_00049at 53.466 kb on - strand, within MPMX26_00049at 53.490 kb on - strand, within MPMX26_00049at 53.490 kb on - strand, within MPMX26_00049at 53.490 kb on - strand, within MPMX26_00049at 53.523 kb on - strand, within MPMX26_00049at 53.523 kb on - strand, within MPMX26_00049at 53.541 kb on - strand, within MPMX26_00049at 53.542 kb on - strand, within MPMX26_00049at 53.548 kb on - strand, within MPMX26_00049at 53.548 kb on - strand, within MPMX26_00049at 53.548 kb on - strand, within MPMX26_00049at 53.548 kb on - strand, within MPMX26_00049at 53.549 kb on - strand, within MPMX26_00049at 53.549 kb on - strand, within MPMX26_00049at 53.549 kb on - strand, within MPMX26_00049at 53.549 kb on - strand, within MPMX26_00049at 53.549 kb on - strand, within MPMX26_00049at 53.564 kb on - strand, within MPMX26_00049at 53.564 kb on - strand, within MPMX26_00049at 53.590 kb on - strand, within MPMX26_00049at 53.689 kb on - strand, within MPMX26_00049at 53.717 kb on - strand, within MPMX26_00049at 53.745 kb on - strand, within MPMX26_00049at 53.745 kb on - strand, within MPMX26_00049at 53.768 kb on - strand, within MPMX26_00049at 53.782 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.789 kb on - strand, within MPMX26_00049at 53.801 kb on - strand, within MPMX26_00049at 53.836 kb on - strand, within MPMX26_00049at 53.959 kb on - strand, within MPMX26_00049at 53.959 kb on - strand, within MPMX26_00049at 53.959 kb on - strand, within MPMX26_00049at 53.972 kb on - strand, within MPMX26_00049at 54.000 kb on - strand, within MPMX26_00049at 54.024 kb on - strand, within MPMX26_00049at 54.044 kb on - strand, within MPMX26_00049at 54.065 kb on - strand, within MPMX26_00049at 54.071 kb on - strand, within MPMX26_00049at 54.071 kb on - strand, within MPMX26_00049at 54.078 kb on - strand, within MPMX26_00049at 54.096 kb on - strand, within MPMX26_00049at 54.096 kb on - strand, within MPMX26_00049at 54.096 kb on - strand, within MPMX26_00049at 54.096 kb on - strand, within MPMX26_00049at 54.096 kb on - strand, within MPMX26_00049at 54.096 kb on - strand, within MPMX26_00049at 54.136 kb on - strand, within MPMX26_00049at 54.214 kb on - strand, within MPMX26_00049at 54.214 kb on - strand, within MPMX26_00049at 54.214 kb on - strand, within MPMX26_00049at 54.214 kb on - strand, within MPMX26_00049at 54.214 kb on - strand, within MPMX26_00049at 54.214 kb on - strand, within MPMX26_00049at 54.214 kb on - strand, within MPMX26_00049at 54.224 kb on - strand, within MPMX26_00049at 54.236 kb on - strandat 54.236 kb on - strandat 54.236 kb on - strandat 54.240 kb on - strandat 54.297 kb on - strandat 54.297 kb on - strandat 54.297 kb on - strandat 54.297 kb on - strandat 54.297 kb on - strandat 54.309 kb on - strandat 54.348 kb on - strandat 54.490 kb on + strandat 54.621 kb on + strandat 54.621 kb on + strandat 54.649 kb on + strandat 54.688 kb on + strandat 54.698 kb on + strandat 54.698 kb on + strandat 54.698 kb on + strandat 54.698 kb on + strandat 54.698 kb on + strandat 54.698 kb on + strandat 54.739 kb on + strandat 54.739 kb on + strandat 54.739 kb on + strandat 54.739 kb on + strandat 54.739 kb on + strandat 54.739 kb on + strandat 54.739 kb on + strandat 54.739 kb on + strandat 54.739 kb on + strandat 54.753 kb on + strandat 54.754 kb on + strandat 54.760 kb on + strandat 54.841 kb on + strand, within MPMX26_00050at 54.841 kb on + strand, within MPMX26_00050at 54.841 kb on + strand, within MPMX26_00050at 54.846 kb on + strand, within MPMX26_00050at 54.846 kb on + strand, within MPMX26_00050at 54.854 kb on + strand, within MPMX26_00050at 54.854 kb on + strand, within MPMX26_00050at 54.854 kb on + strand, within MPMX26_00050at 54.854 kb on + strand, within MPMX26_00050at 54.954 kb on + strand, within MPMX26_00050at 54.954 kb on + strand, within MPMX26_00050at 54.985 kb on + strand, within MPMX26_00050at 54.999 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.016 kb on + strand, within MPMX26_00050at 55.068 kb on + strand, within MPMX26_00050at 55.113 kb on + strand, within MPMX26_00050at 55.113 kb on + strand, within MPMX26_00050at 55.113 kb on + strand, within MPMX26_00050at 55.113 kb on + strand, within MPMX26_00050at 55.113 kb on + strand, within MPMX26_00050at 55.113 kb on + strand, within MPMX26_00050at 55.113 kb on + strand, within MPMX26_00050at 55.113 kb on + strand, within MPMX26_00050at 55.120 kb on + strand, within MPMX26_00050at 55.120 kb on + strand, within MPMX26_00050at 55.120 kb on + strand, within MPMX26_00050at 55.120 kb on + strand, within MPMX26_00050at 55.166 kb on + strand, within MPMX26_00050at 55.166 kb on + strand, within MPMX26_00050at 55.183 kb on + strand, within MPMX26_00050at 55.229 kb on + strand, within MPMX26_00050at 55.258 kb on + strand, within MPMX26_00050at 55.258 kb on + strand, within MPMX26_00050at 55.258 kb on + strand, within MPMX26_00050at 55.258 kb on + strand, within MPMX26_00050at 55.282 kb on + strand, within MPMX26_00050at 55.301 kb on + strand, within MPMX26_00050at 55.301 kb on + strand, within MPMX26_00050at 55.301 kb on + strand, within MPMX26_00050

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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52,279 - MPMX26_00047 0.76 -1.1
52,393 - MPMX26_00047 0.81 +0.3
52,421 - MPMX26_00047 0.82 -0.6
52,475 - MPMX26_00047 0.85 -2.1
52,685 - +0.6
52,690 - +1.6
52,701 - -0.2
52,708 - -2.6
52,796 - +2.0
52,858 - -2.0
52,858 - -2.4
52,858 - -0.4
52,858 - +1.0
52,879 - MPMX26_00048 0.11 -1.4
52,879 - MPMX26_00048 0.11 -0.2
52,886 - MPMX26_00048 0.13 -0.7
52,906 - MPMX26_00048 0.18 -1.3
52,944 - MPMX26_00048 0.27 -2.0
52,954 - MPMX26_00048 0.29 +0.3
52,954 - MPMX26_00048 0.29 +0.6
52,980 - MPMX26_00048 0.35 -2.0
52,980 - MPMX26_00048 0.35 -2.0
52,980 - MPMX26_00048 0.35 -0.7
52,980 - MPMX26_00048 0.35 -0.4
52,980 - MPMX26_00048 0.35 -3.0
52,980 - MPMX26_00048 0.35 -1.9
52,980 - MPMX26_00048 0.35 -1.4
52,980 - MPMX26_00048 0.35 -0.6
53,008 - MPMX26_00048 0.41 -0.7
53,008 - MPMX26_00048 0.41 -1.6
53,016 - MPMX26_00048 0.43 +0.0
53,016 - MPMX26_00048 0.43 -0.4
53,016 - MPMX26_00048 0.43 +1.0
53,087 - MPMX26_00048 0.60 +0.6
53,094 - MPMX26_00048 0.62 -0.2
53,094 - MPMX26_00048 0.62 -2.7
53,106 - MPMX26_00048 0.64 -1.0
53,106 - MPMX26_00048 0.64 -2.2
53,111 - MPMX26_00048 0.66 +0.6
53,111 - MPMX26_00048 0.66 -2.6
53,125 - MPMX26_00048 0.69 -2.9
53,312 - -1.3
53,344 - +1.0
53,358 - +0.6
53,363 - -1.8
53,445 - MPMX26_00049 0.17 -0.2
53,445 - MPMX26_00049 0.17 -1.2
53,466 - MPMX26_00049 0.19 -1.8
53,490 - MPMX26_00049 0.21 -2.0
53,490 - MPMX26_00049 0.21 -0.4
53,490 - MPMX26_00049 0.21 -0.6
53,523 - MPMX26_00049 0.24 +1.0
53,523 - MPMX26_00049 0.24 +1.0
53,541 - MPMX26_00049 0.26 +0.3
53,542 - MPMX26_00049 0.26 +0.3
53,548 - MPMX26_00049 0.27 -2.1
53,548 - MPMX26_00049 0.27 -2.3
53,548 - MPMX26_00049 0.27 -1.9
53,548 - MPMX26_00049 0.27 -0.2
53,549 - MPMX26_00049 0.27 -0.4
53,549 - MPMX26_00049 0.27 -2.6
53,549 - MPMX26_00049 0.27 -2.8
53,549 - MPMX26_00049 0.27 -1.6
53,549 - MPMX26_00049 0.27 -0.2
53,564 - MPMX26_00049 0.28 -3.1
53,564 - MPMX26_00049 0.28 -2.3
53,590 - MPMX26_00049 0.30 -0.2
53,689 - MPMX26_00049 0.40 -0.9
53,717 - MPMX26_00049 0.42 -1.0
53,745 - MPMX26_00049 0.45 -1.1
53,745 - MPMX26_00049 0.45 -2.4
53,768 - MPMX26_00049 0.47 -0.6
53,782 - MPMX26_00049 0.48 -2.4
53,789 - MPMX26_00049 0.49 -0.4
53,789 - MPMX26_00049 0.49 -1.3
53,789 - MPMX26_00049 0.49 -1.2
53,789 - MPMX26_00049 0.49 +0.3
53,789 - MPMX26_00049 0.49 -1.6
53,789 - MPMX26_00049 0.49 -2.5
53,789 - MPMX26_00049 0.49 -1.8
53,789 - MPMX26_00049 0.49 +1.6
53,789 - MPMX26_00049 0.49 +0.6
53,789 - MPMX26_00049 0.49 -1.0
53,789 - MPMX26_00049 0.49 -2.6
53,789 - MPMX26_00049 0.49 -1.2
53,789 - MPMX26_00049 0.49 +1.0
53,789 - MPMX26_00049 0.49 -2.6
53,789 - MPMX26_00049 0.49 -1.1
53,789 - MPMX26_00049 0.49 -2.0
53,801 - MPMX26_00049 0.50 -2.7
53,836 - MPMX26_00049 0.53 +0.0
53,959 - MPMX26_00049 0.65 -1.9
53,959 - MPMX26_00049 0.65 +0.0
53,959 - MPMX26_00049 0.65 -1.0
53,972 - MPMX26_00049 0.66 -0.6
54,000 - MPMX26_00049 0.68 +0.3
54,024 - MPMX26_00049 0.71 -1.0
54,044 - MPMX26_00049 0.72 +0.3
54,065 - MPMX26_00049 0.74 +1.0
54,071 - MPMX26_00049 0.75 -1.3
54,071 - MPMX26_00049 0.75 -0.2
54,078 - MPMX26_00049 0.76 -0.4
54,096 - MPMX26_00049 0.77 -2.8
54,096 - MPMX26_00049 0.77 +1.0
54,096 - MPMX26_00049 0.77 -1.9
54,096 - MPMX26_00049 0.77 -0.9
54,096 - MPMX26_00049 0.77 -0.6
54,096 - MPMX26_00049 0.77 -0.6
54,136 - MPMX26_00049 0.81 +0.3
54,214 - MPMX26_00049 0.88 +0.6
54,214 - MPMX26_00049 0.88 -3.1
54,214 - MPMX26_00049 0.88 -2.4
54,214 - MPMX26_00049 0.88 -0.2
54,214 - MPMX26_00049 0.88 +0.6
54,214 - MPMX26_00049 0.88 -0.6
54,214 - MPMX26_00049 0.88 -3.0
54,224 - MPMX26_00049 0.89 -1.9
54,236 - -1.0
54,236 - -2.0
54,236 - -1.1
54,240 - -1.4
54,297 - -1.7
54,297 - +0.3
54,297 - -1.2
54,297 - -1.6
54,297 - -0.9
54,309 - -1.2
54,348 - -1.3
54,490 + +0.4
54,621 + +0.5
54,621 + -0.5
54,649 + -0.9
54,688 + -0.8
54,698 + -1.6
54,698 + -0.5
54,698 + -1.2
54,698 + -0.7
54,698 + -2.4
54,698 + -0.9
54,739 + -1.5
54,739 + -2.0
54,739 + -3.5
54,739 + +0.8
54,739 + -1.7
54,739 + -0.6
54,739 + +1.6
54,739 + +1.0
54,739 + -2.6
54,753 + +0.8
54,754 + -1.2
54,760 + +2.2
54,841 + MPMX26_00050 0.11 -1.7
54,841 + MPMX26_00050 0.11 -1.1
54,841 + MPMX26_00050 0.11 +0.6
54,846 + MPMX26_00050 0.11 -1.8
54,846 + MPMX26_00050 0.11 -1.3
54,854 + MPMX26_00050 0.12 -0.5
54,854 + MPMX26_00050 0.12 -1.0
54,854 + MPMX26_00050 0.12 -1.5
54,854 + MPMX26_00050 0.12 -3.8
54,954 + MPMX26_00050 0.20 +1.4
54,954 + MPMX26_00050 0.20 -1.0
54,985 + MPMX26_00050 0.22 -1.4
54,999 + MPMX26_00050 0.23 -0.2
55,016 + MPMX26_00050 0.24 -4.2
55,016 + MPMX26_00050 0.24 -0.2
55,016 + MPMX26_00050 0.24 -1.5
55,016 + MPMX26_00050 0.24 -0.7
55,016 + MPMX26_00050 0.24 +0.6
55,016 + MPMX26_00050 0.24 -1.2
55,016 + MPMX26_00050 0.24 -1.3
55,016 + MPMX26_00050 0.24 -1.4
55,016 + MPMX26_00050 0.24 -3.0
55,016 + MPMX26_00050 0.24 -0.2
55,016 + MPMX26_00050 0.24 -2.7
55,016 + MPMX26_00050 0.24 -3.1
55,016 + MPMX26_00050 0.24 +0.6
55,016 + MPMX26_00050 0.24 -1.0
55,016 + MPMX26_00050 0.24 -0.8
55,016 + MPMX26_00050 0.24 -2.3
55,016 + MPMX26_00050 0.24 -2.0
55,016 + MPMX26_00050 0.24 -0.7
55,016 + MPMX26_00050 0.24 -1.1
55,016 + MPMX26_00050 0.24 -1.4
55,016 + MPMX26_00050 0.24 -0.9
55,068 + MPMX26_00050 0.29 +0.0
55,113 + MPMX26_00050 0.32 -2.7
55,113 + MPMX26_00050 0.32 -1.8
55,113 + MPMX26_00050 0.32 -1.6
55,113 + MPMX26_00050 0.32 -2.1
55,113 + MPMX26_00050 0.32 -1.8
55,113 + MPMX26_00050 0.32 -0.9
55,113 + MPMX26_00050 0.32 -2.8
55,113 + MPMX26_00050 0.32 -2.8
55,120 + MPMX26_00050 0.33 -1.4
55,120 + MPMX26_00050 0.33 -0.7
55,120 + MPMX26_00050 0.33 -0.3
55,120 + MPMX26_00050 0.33 -1.5
55,166 + MPMX26_00050 0.36 -2.1
55,166 + MPMX26_00050 0.36 -2.0
55,183 + MPMX26_00050 0.38 -1.1
55,229 + MPMX26_00050 0.41 -3.1
55,258 + MPMX26_00050 0.43 -0.1
55,258 + MPMX26_00050 0.43 -2.4
55,258 + MPMX26_00050 0.43 -2.8
55,258 + MPMX26_00050 0.43 +0.0
55,282 + MPMX26_00050 0.45 -2.8
55,301 + MPMX26_00050 0.47 -0.4
55,301 + MPMX26_00050 0.47 -0.3
55,301 + MPMX26_00050 0.47 +0.6

Or see this region's nucleotide sequence