Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02159 and MPMX26_02160 are separated by 174 nucleotides MPMX26_02160 and MPMX26_02161 are separated by 123 nucleotides
MPMX26_02159: MPMX26_02159 - Elongation factor 4, at 2,213,284 to 2,215,101
_02159
MPMX26_02160: MPMX26_02160 - hypothetical protein, at 2,215,276 to 2,215,719
_02160
MPMX26_02161: MPMX26_02161 - Periplasmic pH-dependent serine endoprotease DegQ, at 2,215,843 to 2,217,225
_02161
Position (kb)
2215
2216 Strain fitness (log2 ratio)
-2
-1
0
1 at 2214.390 kb on - strand, within MPMX26_02159 at 2214.598 kb on - strand, within MPMX26_02159 at 2214.598 kb on - strand, within MPMX26_02159 at 2214.664 kb on - strand, within MPMX26_02159 at 2214.957 kb on - strand at 2215.002 kb on - strand at 2215.340 kb on - strand, within MPMX26_02160 at 2215.423 kb on - strand, within MPMX26_02160 at 2215.444 kb on - strand, within MPMX26_02160 at 2215.462 kb on - strand, within MPMX26_02160 at 2215.464 kb on - strand, within MPMX26_02160 at 2215.533 kb on - strand, within MPMX26_02160 at 2215.533 kb on - strand, within MPMX26_02160 at 2215.533 kb on - strand, within MPMX26_02160 at 2215.659 kb on - strand, within MPMX26_02160 at 2215.898 kb on - strand at 2215.912 kb on - strand at 2215.912 kb on - strand at 2215.959 kb on - strand at 2215.959 kb on - strand at 2216.013 kb on - strand, within MPMX26_02161 at 2216.013 kb on - strand, within MPMX26_02161 at 2216.013 kb on - strand, within MPMX26_02161 at 2216.013 kb on - strand, within MPMX26_02161 at 2216.068 kb on - strand, within MPMX26_02161 at 2216.109 kb on - strand, within MPMX26_02161 at 2216.115 kb on - strand, within MPMX26_02161 at 2216.115 kb on - strand, within MPMX26_02161 at 2216.115 kb on - strand, within MPMX26_02161 at 2216.115 kb on - strand, within MPMX26_02161 at 2216.115 kb on - strand, within MPMX26_02161 at 2216.115 kb on - strand, within MPMX26_02161 at 2216.143 kb on - strand, within MPMX26_02161 at 2216.176 kb on - strand, within MPMX26_02161 at 2216.319 kb on - strand, within MPMX26_02161 at 2216.328 kb on - strand, within MPMX26_02161 at 2216.341 kb on - strand, within MPMX26_02161 at 2216.341 kb on - strand, within MPMX26_02161 at 2216.341 kb on - strand, within MPMX26_02161 at 2216.379 kb on - strand, within MPMX26_02161 at 2216.427 kb on - strand, within MPMX26_02161 at 2216.524 kb on - strand, within MPMX26_02161 at 2216.657 kb on - strand, within MPMX26_02161
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 2,214,390 - MPMX26_02159 0.61 +0.3 2,214,598 - MPMX26_02159 0.72 +0.1 2,214,598 - MPMX26_02159 0.72 -1.4 2,214,664 - MPMX26_02159 0.76 +0.6 2,214,957 - -0.8 2,215,002 - +0.1 2,215,340 - MPMX26_02160 0.14 +0.7 2,215,423 - MPMX26_02160 0.33 -0.2 2,215,444 - MPMX26_02160 0.38 -1.7 2,215,462 - MPMX26_02160 0.42 +0.4 2,215,464 - MPMX26_02160 0.42 +0.6 2,215,533 - MPMX26_02160 0.58 +0.7 2,215,533 - MPMX26_02160 0.58 +1.3 2,215,533 - MPMX26_02160 0.58 +1.5 2,215,659 - MPMX26_02160 0.86 +0.4 2,215,898 - -0.3 2,215,912 - +0.6 2,215,912 - -0.4 2,215,959 - +0.8 2,215,959 - +0.4 2,216,013 - MPMX26_02161 0.12 -2.0 2,216,013 - MPMX26_02161 0.12 +0.3 2,216,013 - MPMX26_02161 0.12 -0.1 2,216,013 - MPMX26_02161 0.12 -0.8 2,216,068 - MPMX26_02161 0.16 +0.3 2,216,109 - MPMX26_02161 0.19 +0.1 2,216,115 - MPMX26_02161 0.20 +1.1 2,216,115 - MPMX26_02161 0.20 +0.6 2,216,115 - MPMX26_02161 0.20 +0.8 2,216,115 - MPMX26_02161 0.20 -0.1 2,216,115 - MPMX26_02161 0.20 +0.6 2,216,115 - MPMX26_02161 0.20 +0.4 2,216,143 - MPMX26_02161 0.22 -1.4 2,216,176 - MPMX26_02161 0.24 +1.0 2,216,319 - MPMX26_02161 0.34 -0.6 2,216,328 - MPMX26_02161 0.35 -0.7 2,216,341 - MPMX26_02161 0.36 +0.1 2,216,341 - MPMX26_02161 0.36 +0.1 2,216,341 - MPMX26_02161 0.36 +0.4 2,216,379 - MPMX26_02161 0.39 -0.1 2,216,427 - MPMX26_02161 0.42 -0.6 2,216,524 - MPMX26_02161 0.49 -0.1 2,216,657 - MPMX26_02161 0.59 +1.5
Or see this region's nucleotide sequence