Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01908

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01906 and MPMX26_01907 are separated by 36 nucleotidesMPMX26_01907 and MPMX26_01908 are separated by 54 nucleotidesMPMX26_01908 and MPMX26_01909 are separated by 1 nucleotidesMPMX26_01909 and MPMX26_01910 overlap by 4 nucleotides MPMX26_01906: MPMX26_01906 - hypothetical protein, at 1,948,926 to 1,949,687 _01906 MPMX26_01907: MPMX26_01907 - hypothetical protein, at 1,949,724 to 1,950,125 _01907 MPMX26_01908: MPMX26_01908 - Malonyl CoA-acyl carrier protein transacylase, at 1,950,180 to 1,951,106 _01908 MPMX26_01909: MPMX26_01909 - Phosphoribosyl-dephospho-CoA transferase, at 1,951,108 to 1,951,722 _01909 MPMX26_01910: MPMX26_01910 - hypothetical protein, at 1,951,719 to 1,952,546 _01910 Position (kb) 1950 1951 1952Strain fitness (log2 ratio) -1 0 1at 1950.282 kb on + strand, within MPMX26_01908at 1950.695 kb on + strand, within MPMX26_01908at 1951.368 kb on + strand, within MPMX26_01909

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,950,282 + MPMX26_01908 0.11 -1.1
1,950,695 + MPMX26_01908 0.56 +0.3
1,951,368 + MPMX26_01909 0.42 +0.7

Or see this region's nucleotide sequence