Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01880

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01879 and MPMX26_01880 are separated by 57 nucleotidesMPMX26_01880 and MPMX26_01881 are separated by 357 nucleotidesMPMX26_01881 and MPMX26_01882 are separated by 132 nucleotides MPMX26_01879: MPMX26_01879 - hypothetical protein, at 1,920,864 to 1,922,915 _01879 MPMX26_01880: MPMX26_01880 - hypothetical protein, at 1,922,973 to 1,923,776 _01880 MPMX26_01881: MPMX26_01881 - Peptide deformylase, at 1,924,134 to 1,924,613 _01881 MPMX26_01882: MPMX26_01882 - hypothetical protein, at 1,924,746 to 1,924,949 _01882 Position (kb) 1922 1923 1924Strain fitness (log2 ratio) -1 0 1at 1923.044 kb on - strandat 1923.059 kb on - strand, within MPMX26_01880at 1923.059 kb on - strand, within MPMX26_01880at 1923.210 kb on - strand, within MPMX26_01880at 1923.501 kb on - strand, within MPMX26_01880at 1924.597 kb on - strandat 1924.742 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,923,044 - -0.7
1,923,059 - MPMX26_01880 0.11 -0.6
1,923,059 - MPMX26_01880 0.11 -0.3
1,923,210 - MPMX26_01880 0.29 +0.8
1,923,501 - MPMX26_01880 0.66 +0.5
1,924,597 - +1.0
1,924,742 + -1.1

Or see this region's nucleotide sequence