Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01865

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01863 and MPMX26_01864 are separated by 109 nucleotidesMPMX26_01864 and MPMX26_01865 overlap by 4 nucleotidesMPMX26_01865 and MPMX26_01866 are separated by 124 nucleotides MPMX26_01863: MPMX26_01863 - hypothetical protein, at 1,901,159 to 1,901,641 _01863 MPMX26_01864: MPMX26_01864 - Inner membrane protein YgaZ, at 1,901,751 to 1,902,497 _01864 MPMX26_01865: MPMX26_01865 - hypothetical protein, at 1,902,494 to 1,902,835 _01865 MPMX26_01866: MPMX26_01866 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 1,902,960 to 1,904,168 _01866 Position (kb) 1902 1903Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1901.498 kb on - strand, within MPMX26_01863at 1901.534 kb on - strand, within MPMX26_01863at 1901.534 kb on - strand, within MPMX26_01863at 1901.534 kb on - strand, within MPMX26_01863at 1901.602 kb on - strandat 1901.602 kb on - strandat 1901.632 kb on - strandat 1901.632 kb on - strandat 1901.632 kb on - strandat 1901.632 kb on - strandat 1901.632 kb on - strandat 1901.632 kb on - strandat 1901.841 kb on + strand, within MPMX26_01864at 1901.973 kb on + strand, within MPMX26_01864at 1902.020 kb on + strand, within MPMX26_01864at 1902.023 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.033 kb on + strand, within MPMX26_01864at 1902.081 kb on + strand, within MPMX26_01864at 1902.108 kb on + strand, within MPMX26_01864at 1902.197 kb on + strand, within MPMX26_01864at 1902.197 kb on + strand, within MPMX26_01864at 1902.242 kb on + strand, within MPMX26_01864at 1902.273 kb on + strand, within MPMX26_01864at 1902.273 kb on + strand, within MPMX26_01864at 1902.273 kb on + strand, within MPMX26_01864at 1902.273 kb on + strand, within MPMX26_01864at 1902.344 kb on + strand, within MPMX26_01864at 1902.490 kb on + strandat 1902.514 kb on + strandat 1902.514 kb on + strandat 1902.811 kb on + strandat 1902.962 kb on + strandat 1902.984 kb on + strandat 1903.018 kb on + strandat 1903.018 kb on + strandat 1903.018 kb on + strandat 1903.018 kb on + strandat 1903.018 kb on + strandat 1903.018 kb on + strandat 1903.018 kb on + strandat 1903.031 kb on + strandat 1903.060 kb on + strandat 1903.060 kb on + strandat 1903.061 kb on + strandat 1903.107 kb on + strand, within MPMX26_01866at 1903.107 kb on + strand, within MPMX26_01866at 1903.134 kb on + strand, within MPMX26_01866at 1903.134 kb on + strand, within MPMX26_01866at 1903.134 kb on + strand, within MPMX26_01866at 1903.134 kb on + strand, within MPMX26_01866at 1903.136 kb on + strand, within MPMX26_01866at 1903.139 kb on + strand, within MPMX26_01866at 1903.139 kb on + strand, within MPMX26_01866at 1903.151 kb on + strand, within MPMX26_01866at 1903.160 kb on + strand, within MPMX26_01866at 1903.160 kb on + strand, within MPMX26_01866at 1903.160 kb on + strand, within MPMX26_01866at 1903.160 kb on + strand, within MPMX26_01866at 1903.160 kb on + strand, within MPMX26_01866at 1903.181 kb on + strand, within MPMX26_01866at 1903.263 kb on + strand, within MPMX26_01866at 1903.277 kb on + strand, within MPMX26_01866at 1903.296 kb on + strand, within MPMX26_01866at 1903.319 kb on + strand, within MPMX26_01866at 1903.335 kb on + strand, within MPMX26_01866at 1903.335 kb on + strand, within MPMX26_01866at 1903.349 kb on + strand, within MPMX26_01866at 1903.385 kb on + strand, within MPMX26_01866at 1903.460 kb on + strand, within MPMX26_01866at 1903.494 kb on + strand, within MPMX26_01866at 1903.501 kb on + strand, within MPMX26_01866at 1903.511 kb on + strand, within MPMX26_01866at 1903.511 kb on + strand, within MPMX26_01866at 1903.511 kb on + strand, within MPMX26_01866at 1903.532 kb on + strand, within MPMX26_01866at 1903.532 kb on + strand, within MPMX26_01866at 1903.532 kb on + strand, within MPMX26_01866at 1903.538 kb on + strand, within MPMX26_01866at 1903.538 kb on + strand, within MPMX26_01866at 1903.538 kb on + strand, within MPMX26_01866at 1903.694 kb on + strand, within MPMX26_01866at 1903.711 kb on + strand, within MPMX26_01866at 1903.747 kb on + strand, within MPMX26_01866at 1903.747 kb on + strand, within MPMX26_01866at 1903.747 kb on + strand, within MPMX26_01866at 1903.747 kb on + strand, within MPMX26_01866at 1903.747 kb on + strand, within MPMX26_01866at 1903.757 kb on + strand, within MPMX26_01866at 1903.757 kb on + strand, within MPMX26_01866at 1903.762 kb on + strand, within MPMX26_01866at 1903.800 kb on + strand, within MPMX26_01866at 1903.805 kb on + strand, within MPMX26_01866at 1903.805 kb on + strand, within MPMX26_01866at 1903.810 kb on + strand, within MPMX26_01866at 1903.821 kb on + strand, within MPMX26_01866at 1903.821 kb on + strand, within MPMX26_01866at 1903.835 kb on + strand, within MPMX26_01866

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,901,498 - MPMX26_01863 0.70 +1.5
1,901,534 - MPMX26_01863 0.78 +0.6
1,901,534 - MPMX26_01863 0.78 -0.4
1,901,534 - MPMX26_01863 0.78 +0.2
1,901,602 - -0.9
1,901,602 - -0.4
1,901,632 - +0.9
1,901,632 - -0.8
1,901,632 - -1.5
1,901,632 - -0.3
1,901,632 - +1.2
1,901,632 - +1.1
1,901,841 + MPMX26_01864 0.12 +0.3
1,901,973 + MPMX26_01864 0.30 -1.1
1,902,020 + MPMX26_01864 0.36 -0.5
1,902,023 + MPMX26_01864 0.36 +1.0
1,902,033 + MPMX26_01864 0.38 +3.4
1,902,033 + MPMX26_01864 0.38 -0.0
1,902,033 + MPMX26_01864 0.38 -0.3
1,902,033 + MPMX26_01864 0.38 -0.5
1,902,033 + MPMX26_01864 0.38 +1.3
1,902,033 + MPMX26_01864 0.38 -0.6
1,902,033 + MPMX26_01864 0.38 -0.8
1,902,033 + MPMX26_01864 0.38 +0.1
1,902,033 + MPMX26_01864 0.38 +1.1
1,902,033 + MPMX26_01864 0.38 +0.5
1,902,033 + MPMX26_01864 0.38 -1.4
1,902,033 + MPMX26_01864 0.38 +0.2
1,902,033 + MPMX26_01864 0.38 -0.3
1,902,033 + MPMX26_01864 0.38 -0.7
1,902,033 + MPMX26_01864 0.38 -1.0
1,902,033 + MPMX26_01864 0.38 +0.4
1,902,033 + MPMX26_01864 0.38 +0.3
1,902,033 + MPMX26_01864 0.38 -0.2
1,902,033 + MPMX26_01864 0.38 +1.6
1,902,033 + MPMX26_01864 0.38 -1.3
1,902,033 + MPMX26_01864 0.38 -0.6
1,902,033 + MPMX26_01864 0.38 +0.3
1,902,081 + MPMX26_01864 0.44 -1.1
1,902,108 + MPMX26_01864 0.48 +0.0
1,902,197 + MPMX26_01864 0.60 -0.5
1,902,197 + MPMX26_01864 0.60 +4.4
1,902,242 + MPMX26_01864 0.66 -0.7
1,902,273 + MPMX26_01864 0.70 -1.2
1,902,273 + MPMX26_01864 0.70 +0.9
1,902,273 + MPMX26_01864 0.70 -0.8
1,902,273 + MPMX26_01864 0.70 -0.3
1,902,344 + MPMX26_01864 0.79 +0.3
1,902,490 + -0.8
1,902,514 + +0.3
1,902,514 + -0.4
1,902,811 + +1.3
1,902,962 + -0.9
1,902,984 + -0.3
1,903,018 + -0.3
1,903,018 + -0.5
1,903,018 + +0.2
1,903,018 + -0.2
1,903,018 + -0.3
1,903,018 + +0.5
1,903,018 + +0.7
1,903,031 + -0.1
1,903,060 + -1.5
1,903,060 + +0.6
1,903,061 + -0.1
1,903,107 + MPMX26_01866 0.12 -0.2
1,903,107 + MPMX26_01866 0.12 +0.1
1,903,134 + MPMX26_01866 0.14 +0.0
1,903,134 + MPMX26_01866 0.14 +0.2
1,903,134 + MPMX26_01866 0.14 -0.9
1,903,134 + MPMX26_01866 0.14 -0.1
1,903,136 + MPMX26_01866 0.15 +0.7
1,903,139 + MPMX26_01866 0.15 +0.1
1,903,139 + MPMX26_01866 0.15 -0.7
1,903,151 + MPMX26_01866 0.16 -0.4
1,903,160 + MPMX26_01866 0.17 +0.2
1,903,160 + MPMX26_01866 0.17 -1.3
1,903,160 + MPMX26_01866 0.17 -0.7
1,903,160 + MPMX26_01866 0.17 -0.2
1,903,160 + MPMX26_01866 0.17 -0.3
1,903,181 + MPMX26_01866 0.18 -0.4
1,903,263 + MPMX26_01866 0.25 +0.2
1,903,277 + MPMX26_01866 0.26 +0.3
1,903,296 + MPMX26_01866 0.28 -2.2
1,903,319 + MPMX26_01866 0.30 -0.7
1,903,335 + MPMX26_01866 0.31 -0.0
1,903,335 + MPMX26_01866 0.31 +0.6
1,903,349 + MPMX26_01866 0.32 +0.7
1,903,385 + MPMX26_01866 0.35 -1.1
1,903,460 + MPMX26_01866 0.41 -0.3
1,903,494 + MPMX26_01866 0.44 -0.3
1,903,501 + MPMX26_01866 0.45 +1.5
1,903,511 + MPMX26_01866 0.46 -0.2
1,903,511 + MPMX26_01866 0.46 -0.4
1,903,511 + MPMX26_01866 0.46 +0.2
1,903,532 + MPMX26_01866 0.47 +1.1
1,903,532 + MPMX26_01866 0.47 -0.5
1,903,532 + MPMX26_01866 0.47 +0.0
1,903,538 + MPMX26_01866 0.48 -0.1
1,903,538 + MPMX26_01866 0.48 +0.2
1,903,538 + MPMX26_01866 0.48 -0.2
1,903,694 + MPMX26_01866 0.61 +1.7
1,903,711 + MPMX26_01866 0.62 +0.3
1,903,747 + MPMX26_01866 0.65 -0.7
1,903,747 + MPMX26_01866 0.65 +0.3
1,903,747 + MPMX26_01866 0.65 +1.9
1,903,747 + MPMX26_01866 0.65 -0.3
1,903,747 + MPMX26_01866 0.65 +0.9
1,903,757 + MPMX26_01866 0.66 -1.0
1,903,757 + MPMX26_01866 0.66 +0.2
1,903,762 + MPMX26_01866 0.66 +0.1
1,903,800 + MPMX26_01866 0.69 -0.2
1,903,805 + MPMX26_01866 0.70 -0.8
1,903,805 + MPMX26_01866 0.70 +1.1
1,903,810 + MPMX26_01866 0.70 -2.3
1,903,821 + MPMX26_01866 0.71 +1.7
1,903,821 + MPMX26_01866 0.71 +0.2
1,903,835 + MPMX26_01866 0.72 -0.3

Or see this region's nucleotide sequence