Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01123 and MPMX26_01124 are separated by 131 nucleotides MPMX26_01124 and MPMX26_01125 are separated by 21 nucleotides MPMX26_01125 and MPMX26_01126 are separated by 69 nucleotides
MPMX26_01123: MPMX26_01123 - Protease HtpX, at 1,191,969 to 1,193,858
_01123
MPMX26_01124: MPMX26_01124 - hypothetical protein, at 1,193,990 to 1,194,664
_01124
MPMX26_01125: MPMX26_01125 - Glyoxylate/hydroxypyruvate reductase B, at 1,194,686 to 1,195,657
_01125
MPMX26_01126: MPMX26_01126 - Beta-barrel assembly-enhancing protease, at 1,195,727 to 1,197,181
_01126
Position (kb)
1194
1195
1196 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1194.722 kb on + strand at 1194.803 kb on + strand, within MPMX26_01125 at 1194.856 kb on + strand, within MPMX26_01125 at 1194.856 kb on + strand, within MPMX26_01125 at 1194.862 kb on + strand, within MPMX26_01125 at 1194.979 kb on + strand, within MPMX26_01125 at 1195.042 kb on + strand, within MPMX26_01125 at 1195.042 kb on + strand, within MPMX26_01125 at 1195.066 kb on + strand, within MPMX26_01125 at 1195.069 kb on + strand, within MPMX26_01125 at 1195.166 kb on + strand, within MPMX26_01125 at 1195.222 kb on + strand, within MPMX26_01125 at 1195.337 kb on + strand, within MPMX26_01125 at 1195.369 kb on + strand, within MPMX26_01125 at 1195.379 kb on + strand, within MPMX26_01125 at 1195.416 kb on + strand, within MPMX26_01125 at 1195.421 kb on + strand, within MPMX26_01125 at 1195.426 kb on + strand, within MPMX26_01125 at 1195.426 kb on + strand, within MPMX26_01125 at 1195.505 kb on + strand, within MPMX26_01125 at 1195.505 kb on + strand, within MPMX26_01125 at 1195.505 kb on + strand, within MPMX26_01125 at 1195.529 kb on + strand, within MPMX26_01125 at 1195.589 kb on + strand at 1195.589 kb on + strand at 1195.589 kb on + strand at 1195.589 kb on + strand at 1195.606 kb on + strand at 1195.636 kb on + strand at 1195.636 kb on + strand at 1195.636 kb on + strand at 1195.636 kb on + strand at 1195.763 kb on + strand at 1195.763 kb on + strand at 1195.763 kb on + strand at 1195.763 kb on + strand at 1195.763 kb on + strand at 1195.846 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 1,194,722 + -1.2 1,194,803 + MPMX26_01125 0.12 -0.3 1,194,856 + MPMX26_01125 0.17 +0.5 1,194,856 + MPMX26_01125 0.17 -1.2 1,194,862 + MPMX26_01125 0.18 +0.4 1,194,979 + MPMX26_01125 0.30 +0.6 1,195,042 + MPMX26_01125 0.37 -0.2 1,195,042 + MPMX26_01125 0.37 +0.2 1,195,066 + MPMX26_01125 0.39 -0.8 1,195,069 + MPMX26_01125 0.39 -0.2 1,195,166 + MPMX26_01125 0.49 +0.1 1,195,222 + MPMX26_01125 0.55 +0.5 1,195,337 + MPMX26_01125 0.67 +0.6 1,195,369 + MPMX26_01125 0.70 +1.0 1,195,379 + MPMX26_01125 0.71 -0.6 1,195,416 + MPMX26_01125 0.75 -0.1 1,195,421 + MPMX26_01125 0.76 +0.1 1,195,426 + MPMX26_01125 0.76 -1.2 1,195,426 + MPMX26_01125 0.76 +2.3 1,195,505 + MPMX26_01125 0.84 -0.6 1,195,505 + MPMX26_01125 0.84 +0.4 1,195,505 + MPMX26_01125 0.84 +0.9 1,195,529 + MPMX26_01125 0.87 +0.7 1,195,589 + -0.5 1,195,589 + +0.5 1,195,589 + +0.4 1,195,589 + -1.0 1,195,606 + +0.3 1,195,636 + +0.3 1,195,636 + +0.1 1,195,636 + +0.1 1,195,636 + +0.0 1,195,763 + -1.8 1,195,763 + -0.5 1,195,763 + -0.4 1,195,763 + -0.3 1,195,763 + +0.2 1,195,846 + +1.6
Or see this region's nucleotide sequence