Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00834

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00832 and MPMX26_00833 are separated by 25 nucleotidesMPMX26_00833 and MPMX26_00834 are separated by 50 nucleotidesMPMX26_00834 and MPMX26_00835 are separated by 27 nucleotides MPMX26_00832: MPMX26_00832 - hypothetical protein, at 878,405 to 879,448 _00832 MPMX26_00833: MPMX26_00833 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 879,474 to 880,178 _00833 MPMX26_00834: MPMX26_00834 - hypothetical protein, at 880,229 to 880,525 _00834 MPMX26_00835: MPMX26_00835 - Porin D, at 880,553 to 881,896 _00835 Position (kb) 880 881Strain fitness (log2 ratio) -1 0 1 2at 880.384 kb on - strand, within MPMX26_00834at 880.384 kb on - strand, within MPMX26_00834at 880.384 kb on - strand, within MPMX26_00834at 880.384 kb on - strand, within MPMX26_00834at 880.390 kb on - strand, within MPMX26_00834at 880.390 kb on - strand, within MPMX26_00834at 880.424 kb on - strand, within MPMX26_00834at 880.456 kb on - strand, within MPMX26_00834

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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880,384 - MPMX26_00834 0.52 +0.5
880,384 - MPMX26_00834 0.52 +0.8
880,384 - MPMX26_00834 0.52 +2.2
880,384 - MPMX26_00834 0.52 -1.5
880,390 - MPMX26_00834 0.54 -0.1
880,390 - MPMX26_00834 0.54 +0.0
880,424 - MPMX26_00834 0.66 -1.2
880,456 - MPMX26_00834 0.76 +2.0

Or see this region's nucleotide sequence