Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00683 and MPMX26_00684 are separated by 199 nucleotides MPMX26_00684 and MPMX26_00685 are separated by 41 nucleotides MPMX26_00685 and MPMX26_00686 are separated by 69 nucleotides
MPMX26_00683: MPMX26_00683 - Valine--tRNA ligase, at 726,003 to 728,894
_00683
MPMX26_00684: MPMX26_00684 - hypothetical protein, at 729,094 to 729,771
_00684
MPMX26_00685: MPMX26_00685 - putative oxidoreductase, at 729,813 to 730,616
_00685
MPMX26_00686: MPMX26_00686 - hypothetical protein, at 730,686 to 731,123
_00686
Position (kb) 729
730 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 729.096 kb on + strand at 729.201 kb on + strand, within MPMX26_00684 at 729.243 kb on + strand, within MPMX26_00684 at 729.243 kb on + strand, within MPMX26_00684 at 729.355 kb on + strand, within MPMX26_00684 at 729.421 kb on + strand, within MPMX26_00684 at 729.421 kb on + strand, within MPMX26_00684 at 729.490 kb on + strand, within MPMX26_00684 at 729.490 kb on + strand, within MPMX26_00684 at 729.505 kb on + strand, within MPMX26_00684 at 729.505 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.520 kb on + strand, within MPMX26_00684 at 729.525 kb on + strand, within MPMX26_00684 at 729.530 kb on + strand, within MPMX26_00684 at 729.612 kb on + strand, within MPMX26_00684 at 729.670 kb on + strand, within MPMX26_00684 at 729.718 kb on + strand at 729.718 kb on + strand at 729.867 kb on + strand at 729.867 kb on + strand at 729.872 kb on + strand at 729.872 kb on + strand at 729.872 kb on + strand at 729.872 kb on + strand at 729.872 kb on + strand at 729.900 kb on + strand, within MPMX26_00685 at 729.932 kb on + strand, within MPMX26_00685 at 729.932 kb on + strand, within MPMX26_00685 at 729.963 kb on + strand, within MPMX26_00685 at 729.968 kb on + strand, within MPMX26_00685 at 730.001 kb on + strand, within MPMX26_00685 at 730.002 kb on + strand, within MPMX26_00685 at 730.089 kb on + strand, within MPMX26_00685 at 730.115 kb on + strand, within MPMX26_00685 at 730.115 kb on + strand, within MPMX26_00685 at 730.178 kb on + strand, within MPMX26_00685 at 730.248 kb on + strand, within MPMX26_00685 at 730.248 kb on + strand, within MPMX26_00685 at 730.253 kb on + strand, within MPMX26_00685 at 730.253 kb on + strand, within MPMX26_00685 at 730.253 kb on + strand, within MPMX26_00685 at 730.253 kb on + strand, within MPMX26_00685 at 730.265 kb on + strand, within MPMX26_00685 at 730.299 kb on + strand, within MPMX26_00685 at 730.299 kb on + strand, within MPMX26_00685 at 730.299 kb on + strand, within MPMX26_00685 at 730.299 kb on + strand, within MPMX26_00685 at 730.299 kb on + strand, within MPMX26_00685 at 730.299 kb on + strand, within MPMX26_00685 at 730.299 kb on + strand, within MPMX26_00685 at 730.343 kb on + strand, within MPMX26_00685 at 730.401 kb on + strand, within MPMX26_00685 at 730.422 kb on + strand, within MPMX26_00685 at 730.422 kb on + strand, within MPMX26_00685 at 730.488 kb on + strand, within MPMX26_00685 at 730.488 kb on + strand, within MPMX26_00685 at 730.521 kb on + strand, within MPMX26_00685 at 730.556 kb on + strand at 730.764 kb on - strand, within MPMX26_00686
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 729,096 + -1.3 729,201 + MPMX26_00684 0.16 +1.2 729,243 + MPMX26_00684 0.22 -0.5 729,243 + MPMX26_00684 0.22 +3.8 729,355 + MPMX26_00684 0.38 +0.0 729,421 + MPMX26_00684 0.48 -0.4 729,421 + MPMX26_00684 0.48 -0.6 729,490 + MPMX26_00684 0.58 -0.1 729,490 + MPMX26_00684 0.58 +0.6 729,505 + MPMX26_00684 0.61 +0.0 729,505 + MPMX26_00684 0.61 +0.0 729,520 + MPMX26_00684 0.63 -0.7 729,520 + MPMX26_00684 0.63 -0.2 729,520 + MPMX26_00684 0.63 +1.8 729,520 + MPMX26_00684 0.63 -0.9 729,520 + MPMX26_00684 0.63 -0.8 729,520 + MPMX26_00684 0.63 +1.2 729,520 + MPMX26_00684 0.63 -0.1 729,520 + MPMX26_00684 0.63 +0.2 729,520 + MPMX26_00684 0.63 +1.0 729,525 + MPMX26_00684 0.64 +0.3 729,530 + MPMX26_00684 0.64 +2.2 729,612 + MPMX26_00684 0.76 +1.5 729,670 + MPMX26_00684 0.85 -0.6 729,718 + -0.7 729,718 + +1.1 729,867 + -0.1 729,867 + +0.2 729,872 + +0.4 729,872 + -0.7 729,872 + +0.3 729,872 + +0.0 729,872 + +3.8 729,900 + MPMX26_00685 0.11 +1.0 729,932 + MPMX26_00685 0.15 +1.5 729,932 + MPMX26_00685 0.15 +1.0 729,963 + MPMX26_00685 0.19 +1.8 729,968 + MPMX26_00685 0.19 -0.6 730,001 + MPMX26_00685 0.23 -1.6 730,002 + MPMX26_00685 0.24 -1.0 730,089 + MPMX26_00685 0.34 -1.0 730,115 + MPMX26_00685 0.38 +1.0 730,115 + MPMX26_00685 0.38 +0.1 730,178 + MPMX26_00685 0.45 +0.7 730,248 + MPMX26_00685 0.54 +1.8 730,248 + MPMX26_00685 0.54 +0.5 730,253 + MPMX26_00685 0.55 -1.3 730,253 + MPMX26_00685 0.55 +1.2 730,253 + MPMX26_00685 0.55 +0.0 730,253 + MPMX26_00685 0.55 -1.5 730,265 + MPMX26_00685 0.56 -0.5 730,299 + MPMX26_00685 0.60 -0.6 730,299 + MPMX26_00685 0.60 -0.3 730,299 + MPMX26_00685 0.60 +0.9 730,299 + MPMX26_00685 0.60 +0.3 730,299 + MPMX26_00685 0.60 -0.1 730,299 + MPMX26_00685 0.60 +0.3 730,299 + MPMX26_00685 0.60 +0.7 730,343 + MPMX26_00685 0.66 +0.8 730,401 + MPMX26_00685 0.73 +0.2 730,422 + MPMX26_00685 0.76 -1.2 730,422 + MPMX26_00685 0.76 +0.9 730,488 + MPMX26_00685 0.84 -0.3 730,488 + MPMX26_00685 0.84 +0.5 730,521 + MPMX26_00685 0.88 -1.6 730,556 + -0.5 730,764 - MPMX26_00686 0.18 +0.3
Or see this region's nucleotide sequence