Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00672

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00670 and MPMX26_00671 are separated by 32 nucleotidesMPMX26_00671 and MPMX26_00672 overlap by 4 nucleotidesMPMX26_00672 and MPMX26_00673 are separated by 182 nucleotidesMPMX26_00673 and MPMX26_00674 are separated by 46 nucleotides MPMX26_00670: MPMX26_00670 - hypothetical protein, at 713,751 to 714,860 _00670 MPMX26_00671: MPMX26_00671 - hypothetical protein, at 714,893 to 714,982 _00671 MPMX26_00672: MPMX26_00672 - hypothetical protein, at 714,979 to 715,545 _00672 MPMX26_00673: MPMX26_00673 - Phosphoglycolate phosphatase, at 715,728 to 716,423 _00673 MPMX26_00674: MPMX26_00674 - Ammonia channel, at 716,470 to 717,657 _00674 Position (kb) 714 715 716Strain fitness (log2 ratio) -1 0 1at 714.074 kb on + strand, within MPMX26_00670at 714.733 kb on - strand, within MPMX26_00670at 715.340 kb on - strand, within MPMX26_00672at 715.764 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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714,074 + MPMX26_00670 0.29 +0.6
714,733 - MPMX26_00670 0.88 -1.1
715,340 - MPMX26_00672 0.64 -0.9
715,764 + +1.2

Or see this region's nucleotide sequence