Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00575 and MPMX26_00576 overlap by 11 nucleotides MPMX26_00576 and MPMX26_00577 are separated by 9 nucleotides MPMX26_00577 and MPMX26_00578 are separated by 103 nucleotides
MPMX26_00575: MPMX26_00575 - hypothetical protein, at 608,519 to 611,368
_00575
MPMX26_00576: MPMX26_00576 - Small-conductance mechanosensitive channel, at 611,358 to 612,281
_00576
MPMX26_00577: MPMX26_00577 - hypothetical protein, at 612,291 to 613,112
_00577
MPMX26_00578: MPMX26_00578 - Type II secretion system protein E, at 613,216 to 614,703
_00578
Position (kb) 612
613
614 Strain fitness (log2 ratio) -1
0
1
2 at 611.573 kb on - strand, within MPMX26_00576 at 611.646 kb on - strand, within MPMX26_00576 at 611.885 kb on - strand, within MPMX26_00576 at 611.915 kb on - strand, within MPMX26_00576 at 611.925 kb on - strand, within MPMX26_00576 at 612.101 kb on - strand, within MPMX26_00576 at 612.359 kb on - strand at 612.406 kb on + strand, within MPMX26_00577 at 612.414 kb on - strand, within MPMX26_00577 at 612.596 kb on - strand, within MPMX26_00577 at 612.596 kb on - strand, within MPMX26_00577 at 612.611 kb on - strand, within MPMX26_00577 at 612.627 kb on - strand, within MPMX26_00577 at 612.767 kb on - strand, within MPMX26_00577 at 612.806 kb on - strand, within MPMX26_00577 at 613.296 kb on + strand at 613.364 kb on + strand at 613.380 kb on + strand, within MPMX26_00578 at 613.380 kb on + strand, within MPMX26_00578 at 613.380 kb on + strand, within MPMX26_00578 at 613.390 kb on + strand, within MPMX26_00578 at 613.419 kb on + strand, within MPMX26_00578 at 613.575 kb on + strand, within MPMX26_00578 at 613.752 kb on + strand, within MPMX26_00578
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 611,573 - MPMX26_00576 0.23 -1.2 611,646 - MPMX26_00576 0.31 +0.2 611,885 - MPMX26_00576 0.57 +1.8 611,915 - MPMX26_00576 0.60 +1.1 611,925 - MPMX26_00576 0.61 -1.7 612,101 - MPMX26_00576 0.80 -0.7 612,359 - -1.1 612,406 + MPMX26_00577 0.14 +1.3 612,414 - MPMX26_00577 0.15 -0.9 612,596 - MPMX26_00577 0.37 +1.6 612,596 - MPMX26_00577 0.37 +1.3 612,611 - MPMX26_00577 0.39 +1.3 612,627 - MPMX26_00577 0.41 +0.6 612,767 - MPMX26_00577 0.58 +1.7 612,806 - MPMX26_00577 0.63 +0.3 613,296 + +0.5 613,364 + +0.4 613,380 + MPMX26_00578 0.11 +2.1 613,380 + MPMX26_00578 0.11 +1.6 613,380 + MPMX26_00578 0.11 +0.8 613,390 + MPMX26_00578 0.12 +1.8 613,419 + MPMX26_00578 0.14 +0.4 613,575 + MPMX26_00578 0.24 +2.4 613,752 + MPMX26_00578 0.36 -1.5
Or see this region's nucleotide sequence