Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00408

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00407 and MPMX26_00408 are separated by 196 nucleotidesMPMX26_00408 and MPMX26_00409 are separated by 28 nucleotides MPMX26_00407: MPMX26_00407 - Trigger factor, at 435,766 to 437,097 _00407 MPMX26_00408: MPMX26_00408 - ATP-dependent Clp protease proteolytic subunit, at 437,294 to 437,899 _00408 MPMX26_00409: MPMX26_00409 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 437,928 to 439,244 _00409 Position (kb) 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1at 436.330 kb on + strand, within MPMX26_00407at 436.345 kb on + strand, within MPMX26_00407at 436.352 kb on + strand, within MPMX26_00407at 436.407 kb on + strand, within MPMX26_00407at 436.422 kb on + strand, within MPMX26_00407at 436.443 kb on + strand, within MPMX26_00407at 436.501 kb on + strand, within MPMX26_00407at 436.526 kb on + strand, within MPMX26_00407at 436.526 kb on + strand, within MPMX26_00407at 436.526 kb on + strand, within MPMX26_00407at 436.550 kb on + strand, within MPMX26_00407at 436.601 kb on + strand, within MPMX26_00407at 436.609 kb on + strand, within MPMX26_00407at 436.619 kb on + strand, within MPMX26_00407at 436.647 kb on + strand, within MPMX26_00407at 436.676 kb on + strand, within MPMX26_00407at 436.748 kb on + strand, within MPMX26_00407at 436.763 kb on + strand, within MPMX26_00407at 436.794 kb on + strand, within MPMX26_00407at 436.794 kb on + strand, within MPMX26_00407at 436.845 kb on + strand, within MPMX26_00407at 436.845 kb on + strand, within MPMX26_00407at 436.845 kb on + strand, within MPMX26_00407at 436.863 kb on + strand, within MPMX26_00407at 436.878 kb on + strand, within MPMX26_00407at 436.883 kb on + strand, within MPMX26_00407at 436.883 kb on + strand, within MPMX26_00407at 436.890 kb on + strand, within MPMX26_00407at 436.905 kb on + strand, within MPMX26_00407at 436.908 kb on + strand, within MPMX26_00407at 436.908 kb on + strand, within MPMX26_00407at 436.928 kb on + strand, within MPMX26_00407at 436.939 kb on + strand, within MPMX26_00407at 436.977 kb on + strandat 436.977 kb on + strandat 436.977 kb on + strandat 436.982 kb on + strandat 437.013 kb on + strandat 437.017 kb on + strandat 437.027 kb on + strandat 437.029 kb on + strandat 437.029 kb on + strandat 437.034 kb on + strandat 437.034 kb on + strandat 437.047 kb on + strandat 437.047 kb on + strandat 437.077 kb on + strandat 437.092 kb on + strandat 437.092 kb on + strandat 437.294 kb on + strandat 437.334 kb on + strandat 437.420 kb on + strand, within MPMX26_00408at 437.487 kb on + strand, within MPMX26_00408at 437.487 kb on + strand, within MPMX26_00408at 437.508 kb on + strand, within MPMX26_00408at 437.517 kb on + strand, within MPMX26_00408at 437.552 kb on + strand, within MPMX26_00408at 437.552 kb on + strand, within MPMX26_00408at 437.573 kb on + strand, within MPMX26_00408at 437.589 kb on + strand, within MPMX26_00408at 437.589 kb on + strand, within MPMX26_00408at 437.676 kb on + strand, within MPMX26_00408at 437.692 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.770 kb on + strand, within MPMX26_00408at 437.775 kb on + strand, within MPMX26_00408at 437.777 kb on + strand, within MPMX26_00408at 437.777 kb on + strand, within MPMX26_00408at 437.787 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.812 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.858 kb on + strandat 437.907 kb on + strandat 437.907 kb on + strandat 437.929 kb on + strandat 437.981 kb on + strandat 438.045 kb on + strandat 438.045 kb on + strandat 438.045 kb on + strandat 438.045 kb on + strandat 438.057 kb on + strandat 438.057 kb on + strandat 438.057 kb on + strandat 438.074 kb on + strand, within MPMX26_00409at 438.074 kb on + strand, within MPMX26_00409at 438.081 kb on + strand, within MPMX26_00409at 438.153 kb on + strand, within MPMX26_00409at 438.179 kb on + strand, within MPMX26_00409at 438.181 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.189 kb on + strand, within MPMX26_00409at 438.208 kb on + strand, within MPMX26_00409at 438.278 kb on + strand, within MPMX26_00409at 438.291 kb on + strand, within MPMX26_00409at 438.292 kb on + strand, within MPMX26_00409at 438.298 kb on + strand, within MPMX26_00409at 438.319 kb on + strand, within MPMX26_00409at 438.319 kb on + strand, within MPMX26_00409at 438.367 kb on + strand, within MPMX26_00409at 438.389 kb on + strand, within MPMX26_00409at 438.406 kb on + strand, within MPMX26_00409at 438.453 kb on + strand, within MPMX26_00409at 438.453 kb on + strand, within MPMX26_00409at 438.453 kb on + strand, within MPMX26_00409at 438.523 kb on + strand, within MPMX26_00409at 438.523 kb on + strand, within MPMX26_00409at 438.523 kb on + strand, within MPMX26_00409at 438.523 kb on + strand, within MPMX26_00409at 438.537 kb on + strand, within MPMX26_00409at 438.546 kb on + strand, within MPMX26_00409at 438.546 kb on + strand, within MPMX26_00409at 438.546 kb on + strand, within MPMX26_00409at 438.577 kb on + strand, within MPMX26_00409at 438.591 kb on + strand, within MPMX26_00409at 438.597 kb on + strand, within MPMX26_00409at 438.613 kb on + strand, within MPMX26_00409at 438.638 kb on + strand, within MPMX26_00409at 438.646 kb on + strand, within MPMX26_00409at 438.777 kb on + strand, within MPMX26_00409at 438.777 kb on + strand, within MPMX26_00409at 438.782 kb on + strand, within MPMX26_00409at 438.790 kb on + strand, within MPMX26_00409at 438.791 kb on + strand, within MPMX26_00409at 438.804 kb on + strand, within MPMX26_00409at 438.856 kb on + strand, within MPMX26_00409at 438.862 kb on + strand, within MPMX26_00409at 438.882 kb on + strand, within MPMX26_00409at 438.896 kb on + strand, within MPMX26_00409at 438.896 kb on + strand, within MPMX26_00409at 438.898 kb on + strand, within MPMX26_00409

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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436,330 + MPMX26_00407 0.42 -0.5
436,345 + MPMX26_00407 0.43 -0.4
436,352 + MPMX26_00407 0.44 -0.9
436,407 + MPMX26_00407 0.48 -2.0
436,422 + MPMX26_00407 0.49 -0.4
436,443 + MPMX26_00407 0.51 -0.6
436,501 + MPMX26_00407 0.55 -2.1
436,526 + MPMX26_00407 0.57 -0.2
436,526 + MPMX26_00407 0.57 -1.9
436,526 + MPMX26_00407 0.57 -1.2
436,550 + MPMX26_00407 0.59 +0.4
436,601 + MPMX26_00407 0.63 -1.1
436,609 + MPMX26_00407 0.63 -0.2
436,619 + MPMX26_00407 0.64 -1.6
436,647 + MPMX26_00407 0.66 -1.6
436,676 + MPMX26_00407 0.68 +0.1
436,748 + MPMX26_00407 0.74 +0.0
436,763 + MPMX26_00407 0.75 -1.6
436,794 + MPMX26_00407 0.77 -0.4
436,794 + MPMX26_00407 0.77 -0.7
436,845 + MPMX26_00407 0.81 -1.0
436,845 + MPMX26_00407 0.81 -1.6
436,845 + MPMX26_00407 0.81 +0.1
436,863 + MPMX26_00407 0.82 -0.5
436,878 + MPMX26_00407 0.83 -1.1
436,883 + MPMX26_00407 0.84 -1.1
436,883 + MPMX26_00407 0.84 -0.3
436,890 + MPMX26_00407 0.84 -1.2
436,905 + MPMX26_00407 0.86 -2.4
436,908 + MPMX26_00407 0.86 -0.3
436,908 + MPMX26_00407 0.86 -0.5
436,928 + MPMX26_00407 0.87 -0.1
436,939 + MPMX26_00407 0.88 -1.0
436,977 + -1.6
436,977 + -2.3
436,977 + -2.4
436,982 + -1.2
437,013 + +0.1
437,017 + -1.1
437,027 + -0.9
437,029 + -1.2
437,029 + -0.5
437,034 + -0.1
437,034 + +0.4
437,047 + +0.8
437,047 + -0.1
437,077 + +0.0
437,092 + +0.8
437,092 + +0.3
437,294 + -0.2
437,334 + -1.7
437,420 + MPMX26_00408 0.21 -0.6
437,487 + MPMX26_00408 0.32 -0.6
437,487 + MPMX26_00408 0.32 -2.6
437,508 + MPMX26_00408 0.35 +0.3
437,517 + MPMX26_00408 0.37 +0.5
437,552 + MPMX26_00408 0.43 -0.0
437,552 + MPMX26_00408 0.43 -0.8
437,573 + MPMX26_00408 0.46 +0.0
437,589 + MPMX26_00408 0.49 +0.6
437,589 + MPMX26_00408 0.49 -0.9
437,676 + MPMX26_00408 0.63 +1.1
437,692 + MPMX26_00408 0.66 -0.7
437,759 + MPMX26_00408 0.77 +1.5
437,759 + MPMX26_00408 0.77 -1.5
437,759 + MPMX26_00408 0.77 +0.3
437,759 + MPMX26_00408 0.77 -0.5
437,759 + MPMX26_00408 0.77 -0.1
437,759 + MPMX26_00408 0.77 -0.2
437,759 + MPMX26_00408 0.77 -1.6
437,759 + MPMX26_00408 0.77 +0.7
437,759 + MPMX26_00408 0.77 -0.2
437,759 + MPMX26_00408 0.77 -1.0
437,759 + MPMX26_00408 0.77 +0.3
437,759 + MPMX26_00408 0.77 -0.2
437,759 + MPMX26_00408 0.77 -1.1
437,770 + MPMX26_00408 0.79 -1.1
437,775 + MPMX26_00408 0.79 -0.1
437,777 + MPMX26_00408 0.80 -2.3
437,777 + MPMX26_00408 0.80 -0.2
437,787 + MPMX26_00408 0.81 -2.6
437,789 + MPMX26_00408 0.82 -1.1
437,789 + MPMX26_00408 0.82 -1.6
437,789 + MPMX26_00408 0.82 -0.9
437,789 + MPMX26_00408 0.82 -1.8
437,789 + MPMX26_00408 0.82 -1.9
437,789 + MPMX26_00408 0.82 -1.6
437,789 + MPMX26_00408 0.82 -0.0
437,789 + MPMX26_00408 0.82 +0.4
437,789 + MPMX26_00408 0.82 -0.6
437,789 + MPMX26_00408 0.82 -1.2
437,789 + MPMX26_00408 0.82 -1.1
437,789 + MPMX26_00408 0.82 -1.3
437,789 + MPMX26_00408 0.82 +0.4
437,789 + MPMX26_00408 0.82 -0.3
437,789 + MPMX26_00408 0.82 -0.9
437,789 + MPMX26_00408 0.82 -0.3
437,812 + MPMX26_00408 0.85 -1.6
437,833 + MPMX26_00408 0.89 -2.2
437,833 + MPMX26_00408 0.89 +0.8
437,833 + MPMX26_00408 0.89 -1.1
437,833 + MPMX26_00408 0.89 -3.1
437,833 + MPMX26_00408 0.89 -2.4
437,833 + MPMX26_00408 0.89 -1.0
437,858 + -2.2
437,907 + -0.3
437,907 + -0.7
437,929 + -0.4
437,981 + -2.8
438,045 + -0.7
438,045 + -1.8
438,045 + -1.0
438,045 + -0.1
438,057 + -1.0
438,057 + -1.1
438,057 + -1.8
438,074 + MPMX26_00409 0.11 -1.4
438,074 + MPMX26_00409 0.11 -0.3
438,081 + MPMX26_00409 0.12 -1.2
438,153 + MPMX26_00409 0.17 -1.1
438,179 + MPMX26_00409 0.19 -1.2
438,181 + MPMX26_00409 0.19 -0.7
438,189 + MPMX26_00409 0.20 -0.3
438,189 + MPMX26_00409 0.20 +0.2
438,189 + MPMX26_00409 0.20 +0.1
438,189 + MPMX26_00409 0.20 -0.5
438,189 + MPMX26_00409 0.20 -0.6
438,189 + MPMX26_00409 0.20 -0.5
438,189 + MPMX26_00409 0.20 -0.1
438,189 + MPMX26_00409 0.20 +0.3
438,189 + MPMX26_00409 0.20 -1.2
438,189 + MPMX26_00409 0.20 -1.1
438,208 + MPMX26_00409 0.21 +0.3
438,278 + MPMX26_00409 0.27 -0.8
438,291 + MPMX26_00409 0.28 +0.6
438,292 + MPMX26_00409 0.28 -0.5
438,298 + MPMX26_00409 0.28 -1.4
438,319 + MPMX26_00409 0.30 -0.1
438,319 + MPMX26_00409 0.30 +0.1
438,367 + MPMX26_00409 0.33 -2.1
438,389 + MPMX26_00409 0.35 +0.0
438,406 + MPMX26_00409 0.36 -0.8
438,453 + MPMX26_00409 0.40 -1.7
438,453 + MPMX26_00409 0.40 -1.8
438,453 + MPMX26_00409 0.40 -2.2
438,523 + MPMX26_00409 0.45 -0.9
438,523 + MPMX26_00409 0.45 -0.8
438,523 + MPMX26_00409 0.45 -1.3
438,523 + MPMX26_00409 0.45 +1.2
438,537 + MPMX26_00409 0.46 +0.2
438,546 + MPMX26_00409 0.47 +0.0
438,546 + MPMX26_00409 0.47 -0.5
438,546 + MPMX26_00409 0.47 -0.6
438,577 + MPMX26_00409 0.49 -0.6
438,591 + MPMX26_00409 0.50 +0.1
438,597 + MPMX26_00409 0.51 -0.9
438,613 + MPMX26_00409 0.52 +0.0
438,638 + MPMX26_00409 0.54 -0.6
438,646 + MPMX26_00409 0.55 -0.1
438,777 + MPMX26_00409 0.64 -0.6
438,777 + MPMX26_00409 0.64 -0.6
438,782 + MPMX26_00409 0.65 -1.1
438,790 + MPMX26_00409 0.65 -0.1
438,791 + MPMX26_00409 0.66 +0.8
438,804 + MPMX26_00409 0.67 -1.6
438,856 + MPMX26_00409 0.70 -0.3
438,862 + MPMX26_00409 0.71 -0.0
438,882 + MPMX26_00409 0.72 -0.5
438,896 + MPMX26_00409 0.74 -0.9
438,896 + MPMX26_00409 0.74 -0.7
438,898 + MPMX26_00409 0.74 +0.3

Or see this region's nucleotide sequence