Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00407

Experiment: TSB with Dermcidin 1 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00406 and MPMX26_00407 are separated by 487 nucleotidesMPMX26_00407 and MPMX26_00408 are separated by 196 nucleotidesMPMX26_00408 and MPMX26_00409 are separated by 28 nucleotides MPMX26_00406: MPMX26_00406 - putative TonB-dependent receptor BfrD, at 432,993 to 435,278 _00406 MPMX26_00407: MPMX26_00407 - Trigger factor, at 435,766 to 437,097 _00407 MPMX26_00408: MPMX26_00408 - ATP-dependent Clp protease proteolytic subunit, at 437,294 to 437,899 _00408 MPMX26_00409: MPMX26_00409 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 437,928 to 439,244 _00409 Position (kb) 435 436 437 438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 434.804 kb on - strand, within MPMX26_00406at 434.804 kb on - strand, within MPMX26_00406at 434.804 kb on - strand, within MPMX26_00406at 434.809 kb on - strand, within MPMX26_00406at 434.815 kb on - strand, within MPMX26_00406at 434.815 kb on - strand, within MPMX26_00406at 434.815 kb on - strand, within MPMX26_00406at 434.820 kb on - strand, within MPMX26_00406at 434.820 kb on - strand, within MPMX26_00406at 434.825 kb on - strand, within MPMX26_00406at 434.844 kb on - strand, within MPMX26_00406at 434.844 kb on - strand, within MPMX26_00406at 434.853 kb on - strand, within MPMX26_00406at 434.853 kb on - strand, within MPMX26_00406at 434.854 kb on - strand, within MPMX26_00406at 434.861 kb on - strand, within MPMX26_00406at 434.863 kb on - strand, within MPMX26_00406at 434.863 kb on - strand, within MPMX26_00406at 434.887 kb on - strand, within MPMX26_00406at 434.937 kb on - strand, within MPMX26_00406at 434.937 kb on - strand, within MPMX26_00406at 434.995 kb on - strand, within MPMX26_00406at 434.995 kb on - strand, within MPMX26_00406at 435.014 kb on - strand, within MPMX26_00406at 435.014 kb on - strand, within MPMX26_00406at 435.039 kb on - strand, within MPMX26_00406at 435.129 kb on - strandat 435.130 kb on - strandat 435.130 kb on - strandat 435.151 kb on - strandat 435.156 kb on - strandat 435.156 kb on - strandat 435.162 kb on - strandat 435.162 kb on - strandat 435.162 kb on - strandat 435.167 kb on - strandat 435.177 kb on - strandat 435.177 kb on - strandat 435.202 kb on - strandat 435.209 kb on - strandat 435.224 kb on - strandat 435.710 kb on + strandat 435.710 kb on + strandat 435.787 kb on + strandat 435.787 kb on + strandat 435.806 kb on + strandat 435.806 kb on + strandat 435.833 kb on + strandat 435.846 kb on + strandat 435.846 kb on + strandat 435.846 kb on + strandat 435.846 kb on + strandat 435.846 kb on + strandat 435.880 kb on + strandat 435.893 kb on + strandat 435.920 kb on + strand, within MPMX26_00407at 435.961 kb on + strand, within MPMX26_00407at 435.971 kb on + strand, within MPMX26_00407at 436.071 kb on + strand, within MPMX26_00407at 436.085 kb on + strand, within MPMX26_00407at 436.117 kb on + strand, within MPMX26_00407at 436.117 kb on + strand, within MPMX26_00407at 436.117 kb on + strand, within MPMX26_00407at 436.117 kb on + strand, within MPMX26_00407at 436.127 kb on + strand, within MPMX26_00407at 436.169 kb on + strand, within MPMX26_00407at 436.204 kb on + strand, within MPMX26_00407at 436.209 kb on + strand, within MPMX26_00407at 436.256 kb on + strand, within MPMX26_00407at 436.271 kb on + strand, within MPMX26_00407at 436.330 kb on + strand, within MPMX26_00407at 436.345 kb on + strand, within MPMX26_00407at 436.352 kb on + strand, within MPMX26_00407at 436.407 kb on + strand, within MPMX26_00407at 436.422 kb on + strand, within MPMX26_00407at 436.443 kb on + strand, within MPMX26_00407at 436.501 kb on + strand, within MPMX26_00407at 436.526 kb on + strand, within MPMX26_00407at 436.526 kb on + strand, within MPMX26_00407at 436.526 kb on + strand, within MPMX26_00407at 436.550 kb on + strand, within MPMX26_00407at 436.601 kb on + strand, within MPMX26_00407at 436.609 kb on + strand, within MPMX26_00407at 436.619 kb on + strand, within MPMX26_00407at 436.647 kb on + strand, within MPMX26_00407at 436.676 kb on + strand, within MPMX26_00407at 436.748 kb on + strand, within MPMX26_00407at 436.763 kb on + strand, within MPMX26_00407at 436.794 kb on + strand, within MPMX26_00407at 436.794 kb on + strand, within MPMX26_00407at 436.845 kb on + strand, within MPMX26_00407at 436.845 kb on + strand, within MPMX26_00407at 436.845 kb on + strand, within MPMX26_00407at 436.863 kb on + strand, within MPMX26_00407at 436.878 kb on + strand, within MPMX26_00407at 436.883 kb on + strand, within MPMX26_00407at 436.883 kb on + strand, within MPMX26_00407at 436.890 kb on + strand, within MPMX26_00407at 436.905 kb on + strand, within MPMX26_00407at 436.908 kb on + strand, within MPMX26_00407at 436.908 kb on + strand, within MPMX26_00407at 436.928 kb on + strand, within MPMX26_00407at 436.939 kb on + strand, within MPMX26_00407at 436.977 kb on + strandat 436.977 kb on + strandat 436.977 kb on + strandat 436.982 kb on + strandat 437.013 kb on + strandat 437.017 kb on + strandat 437.027 kb on + strandat 437.029 kb on + strandat 437.029 kb on + strandat 437.034 kb on + strandat 437.034 kb on + strandat 437.047 kb on + strandat 437.047 kb on + strandat 437.077 kb on + strandat 437.092 kb on + strandat 437.092 kb on + strandat 437.294 kb on + strandat 437.334 kb on + strandat 437.420 kb on + strand, within MPMX26_00408at 437.487 kb on + strand, within MPMX26_00408at 437.487 kb on + strand, within MPMX26_00408at 437.508 kb on + strand, within MPMX26_00408at 437.517 kb on + strand, within MPMX26_00408at 437.552 kb on + strand, within MPMX26_00408at 437.552 kb on + strand, within MPMX26_00408at 437.573 kb on + strand, within MPMX26_00408at 437.589 kb on + strand, within MPMX26_00408at 437.589 kb on + strand, within MPMX26_00408at 437.676 kb on + strand, within MPMX26_00408at 437.692 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.759 kb on + strand, within MPMX26_00408at 437.770 kb on + strand, within MPMX26_00408at 437.775 kb on + strand, within MPMX26_00408at 437.777 kb on + strand, within MPMX26_00408at 437.777 kb on + strand, within MPMX26_00408at 437.787 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.789 kb on + strand, within MPMX26_00408at 437.812 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.833 kb on + strand, within MPMX26_00408at 437.858 kb on + strandat 437.907 kb on + strandat 437.907 kb on + strandat 437.929 kb on + strandat 437.981 kb on + strandat 438.045 kb on + strandat 438.045 kb on + strandat 438.045 kb on + strandat 438.045 kb on + strandat 438.057 kb on + strandat 438.057 kb on + strandat 438.057 kb on + strandat 438.074 kb on + strand, within MPMX26_00409at 438.074 kb on + strand, within MPMX26_00409at 438.081 kb on + strand, within MPMX26_00409

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
remove
434,804 - MPMX26_00406 0.79 -1.9
434,804 - MPMX26_00406 0.79 -3.6
434,804 - MPMX26_00406 0.79 -2.8
434,809 - MPMX26_00406 0.79 -1.9
434,815 - MPMX26_00406 0.80 -1.6
434,815 - MPMX26_00406 0.80 -1.4
434,815 - MPMX26_00406 0.80 -1.5
434,820 - MPMX26_00406 0.80 -1.6
434,820 - MPMX26_00406 0.80 -0.5
434,825 - MPMX26_00406 0.80 -0.6
434,844 - MPMX26_00406 0.81 -2.6
434,844 - MPMX26_00406 0.81 -2.9
434,853 - MPMX26_00406 0.81 -2.3
434,853 - MPMX26_00406 0.81 -3.5
434,854 - MPMX26_00406 0.81 -2.5
434,861 - MPMX26_00406 0.82 +0.4
434,863 - MPMX26_00406 0.82 -2.9
434,863 - MPMX26_00406 0.82 -2.2
434,887 - MPMX26_00406 0.83 -4.0
434,937 - MPMX26_00406 0.85 +1.3
434,937 - MPMX26_00406 0.85 -1.9
434,995 - MPMX26_00406 0.88 -2.0
434,995 - MPMX26_00406 0.88 -3.2
435,014 - MPMX26_00406 0.88 -2.6
435,014 - MPMX26_00406 0.88 -3.2
435,039 - MPMX26_00406 0.90 -2.4
435,129 - -1.7
435,130 - -3.3
435,130 - +0.4
435,151 - -3.8
435,156 - -2.0
435,156 - -2.0
435,162 - -0.8
435,162 - -1.5
435,162 - -1.5
435,167 - -2.4
435,177 - -1.9
435,177 - -2.1
435,202 - -1.4
435,209 - -1.2
435,224 - -1.3
435,710 + -1.7
435,710 + -0.8
435,787 + -0.5
435,787 + -0.5
435,806 + -1.2
435,806 + -0.2
435,833 + -0.8
435,846 + -0.8
435,846 + +0.7
435,846 + -0.8
435,846 + -0.2
435,846 + -0.5
435,880 + -0.4
435,893 + -0.7
435,920 + MPMX26_00407 0.12 -0.5
435,961 + MPMX26_00407 0.15 +0.6
435,971 + MPMX26_00407 0.15 -1.4
436,071 + MPMX26_00407 0.23 -1.0
436,085 + MPMX26_00407 0.24 -1.4
436,117 + MPMX26_00407 0.26 -0.1
436,117 + MPMX26_00407 0.26 -0.2
436,117 + MPMX26_00407 0.26 -1.1
436,117 + MPMX26_00407 0.26 -2.3
436,127 + MPMX26_00407 0.27 -1.1
436,169 + MPMX26_00407 0.30 -0.0
436,204 + MPMX26_00407 0.33 -1.7
436,209 + MPMX26_00407 0.33 -1.6
436,256 + MPMX26_00407 0.37 -0.9
436,271 + MPMX26_00407 0.38 -0.7
436,330 + MPMX26_00407 0.42 -0.5
436,345 + MPMX26_00407 0.43 -0.4
436,352 + MPMX26_00407 0.44 -0.9
436,407 + MPMX26_00407 0.48 -2.0
436,422 + MPMX26_00407 0.49 -0.4
436,443 + MPMX26_00407 0.51 -0.6
436,501 + MPMX26_00407 0.55 -2.1
436,526 + MPMX26_00407 0.57 -0.2
436,526 + MPMX26_00407 0.57 -1.9
436,526 + MPMX26_00407 0.57 -1.2
436,550 + MPMX26_00407 0.59 +0.4
436,601 + MPMX26_00407 0.63 -1.1
436,609 + MPMX26_00407 0.63 -0.2
436,619 + MPMX26_00407 0.64 -1.6
436,647 + MPMX26_00407 0.66 -1.6
436,676 + MPMX26_00407 0.68 +0.1
436,748 + MPMX26_00407 0.74 +0.0
436,763 + MPMX26_00407 0.75 -1.6
436,794 + MPMX26_00407 0.77 -0.4
436,794 + MPMX26_00407 0.77 -0.7
436,845 + MPMX26_00407 0.81 -1.0
436,845 + MPMX26_00407 0.81 -1.6
436,845 + MPMX26_00407 0.81 +0.1
436,863 + MPMX26_00407 0.82 -0.5
436,878 + MPMX26_00407 0.83 -1.1
436,883 + MPMX26_00407 0.84 -1.1
436,883 + MPMX26_00407 0.84 -0.3
436,890 + MPMX26_00407 0.84 -1.2
436,905 + MPMX26_00407 0.86 -2.4
436,908 + MPMX26_00407 0.86 -0.3
436,908 + MPMX26_00407 0.86 -0.5
436,928 + MPMX26_00407 0.87 -0.1
436,939 + MPMX26_00407 0.88 -1.0
436,977 + -1.6
436,977 + -2.3
436,977 + -2.4
436,982 + -1.2
437,013 + +0.1
437,017 + -1.1
437,027 + -0.9
437,029 + -1.2
437,029 + -0.5
437,034 + -0.1
437,034 + +0.4
437,047 + +0.8
437,047 + -0.1
437,077 + +0.0
437,092 + +0.8
437,092 + +0.3
437,294 + -0.2
437,334 + -1.7
437,420 + MPMX26_00408 0.21 -0.6
437,487 + MPMX26_00408 0.32 -0.6
437,487 + MPMX26_00408 0.32 -2.6
437,508 + MPMX26_00408 0.35 +0.3
437,517 + MPMX26_00408 0.37 +0.5
437,552 + MPMX26_00408 0.43 -0.0
437,552 + MPMX26_00408 0.43 -0.8
437,573 + MPMX26_00408 0.46 +0.0
437,589 + MPMX26_00408 0.49 +0.6
437,589 + MPMX26_00408 0.49 -0.9
437,676 + MPMX26_00408 0.63 +1.1
437,692 + MPMX26_00408 0.66 -0.7
437,759 + MPMX26_00408 0.77 +1.5
437,759 + MPMX26_00408 0.77 -1.5
437,759 + MPMX26_00408 0.77 +0.3
437,759 + MPMX26_00408 0.77 -0.5
437,759 + MPMX26_00408 0.77 -0.1
437,759 + MPMX26_00408 0.77 -0.2
437,759 + MPMX26_00408 0.77 -1.6
437,759 + MPMX26_00408 0.77 +0.7
437,759 + MPMX26_00408 0.77 -0.2
437,759 + MPMX26_00408 0.77 -1.0
437,759 + MPMX26_00408 0.77 +0.3
437,759 + MPMX26_00408 0.77 -0.2
437,759 + MPMX26_00408 0.77 -1.1
437,770 + MPMX26_00408 0.79 -1.1
437,775 + MPMX26_00408 0.79 -0.1
437,777 + MPMX26_00408 0.80 -2.3
437,777 + MPMX26_00408 0.80 -0.2
437,787 + MPMX26_00408 0.81 -2.6
437,789 + MPMX26_00408 0.82 -1.1
437,789 + MPMX26_00408 0.82 -1.6
437,789 + MPMX26_00408 0.82 -0.9
437,789 + MPMX26_00408 0.82 -1.8
437,789 + MPMX26_00408 0.82 -1.9
437,789 + MPMX26_00408 0.82 -1.6
437,789 + MPMX26_00408 0.82 -0.0
437,789 + MPMX26_00408 0.82 +0.4
437,789 + MPMX26_00408 0.82 -0.6
437,789 + MPMX26_00408 0.82 -1.2
437,789 + MPMX26_00408 0.82 -1.1
437,789 + MPMX26_00408 0.82 -1.3
437,789 + MPMX26_00408 0.82 +0.4
437,789 + MPMX26_00408 0.82 -0.3
437,789 + MPMX26_00408 0.82 -0.9
437,789 + MPMX26_00408 0.82 -0.3
437,812 + MPMX26_00408 0.85 -1.6
437,833 + MPMX26_00408 0.89 -2.2
437,833 + MPMX26_00408 0.89 +0.8
437,833 + MPMX26_00408 0.89 -1.1
437,833 + MPMX26_00408 0.89 -3.1
437,833 + MPMX26_00408 0.89 -2.4
437,833 + MPMX26_00408 0.89 -1.0
437,858 + -2.2
437,907 + -0.3
437,907 + -0.7
437,929 + -0.4
437,981 + -2.8
438,045 + -0.7
438,045 + -1.8
438,045 + -1.0
438,045 + -0.1
438,057 + -1.0
438,057 + -1.1
438,057 + -1.8
438,074 + MPMX26_00409 0.11 -1.4
438,074 + MPMX26_00409 0.11 -0.3
438,081 + MPMX26_00409 0.12 -1.2

Or see this region's nucleotide sequence