Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00386 and MPMX26_00387 are separated by 367 nucleotides MPMX26_00387 and MPMX26_00388 overlap by 13 nucleotides MPMX26_00388 and MPMX26_00389 overlap by 8 nucleotides
MPMX26_00386: MPMX26_00386 - Thymidylate synthase, at 415,127 to 415,969
_00386
MPMX26_00387: MPMX26_00387 - hypothetical protein, at 416,337 to 417,323
_00387
MPMX26_00388: MPMX26_00388 - hypothetical protein, at 417,311 to 418,090
_00388
MPMX26_00389: MPMX26_00389 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 418,083 to 418,679
_00389
Position (kb) 416
417
418 Strain fitness (log2 ratio) -1
0
1
2
3 at 416.437 kb on + strand, within MPMX26_00387 at 416.587 kb on + strand, within MPMX26_00387 at 416.594 kb on + strand, within MPMX26_00387 at 416.618 kb on + strand, within MPMX26_00387 at 416.618 kb on + strand, within MPMX26_00387 at 416.729 kb on + strand, within MPMX26_00387 at 416.865 kb on + strand, within MPMX26_00387 at 416.868 kb on - strand, within MPMX26_00387 at 416.976 kb on + strand, within MPMX26_00387 at 417.218 kb on + strand, within MPMX26_00387 at 417.511 kb on + strand, within MPMX26_00388 at 417.693 kb on + strand, within MPMX26_00388 at 417.761 kb on + strand, within MPMX26_00388 at 417.863 kb on + strand, within MPMX26_00388 at 417.863 kb on + strand, within MPMX26_00388 at 417.863 kb on + strand, within MPMX26_00388 at 417.863 kb on + strand, within MPMX26_00388 at 417.891 kb on + strand, within MPMX26_00388 at 417.898 kb on + strand, within MPMX26_00388 at 417.898 kb on + strand, within MPMX26_00388 at 418.094 kb on + strand at 418.136 kb on + strand at 418.136 kb on + strand at 418.146 kb on - strand, within MPMX26_00389 at 418.153 kb on + strand, within MPMX26_00389 at 418.161 kb on - strand, within MPMX26_00389 at 418.298 kb on + strand, within MPMX26_00389
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 416,437 + MPMX26_00387 0.10 +1.0 416,587 + MPMX26_00387 0.25 +1.5 416,594 + MPMX26_00387 0.26 +1.5 416,618 + MPMX26_00387 0.28 +0.8 416,618 + MPMX26_00387 0.28 +1.3 416,729 + MPMX26_00387 0.40 +0.4 416,865 + MPMX26_00387 0.53 +2.3 416,868 - MPMX26_00387 0.54 +0.8 416,976 + MPMX26_00387 0.65 +1.3 417,218 + MPMX26_00387 0.89 +0.8 417,511 + MPMX26_00388 0.26 +2.8 417,693 + MPMX26_00388 0.49 +2.8 417,761 + MPMX26_00388 0.58 +1.2 417,863 + MPMX26_00388 0.71 -0.7 417,863 + MPMX26_00388 0.71 -1.5 417,863 + MPMX26_00388 0.71 +0.5 417,863 + MPMX26_00388 0.71 +1.8 417,891 + MPMX26_00388 0.74 -0.4 417,898 + MPMX26_00388 0.75 +0.5 417,898 + MPMX26_00388 0.75 +1.8 418,094 + +1.8 418,136 + +2.6 418,136 + +0.3 418,146 - MPMX26_00389 0.11 +0.5 418,153 + MPMX26_00389 0.12 +1.8 418,161 - MPMX26_00389 0.13 +1.3 418,298 + MPMX26_00389 0.36 +0.8
Or see this region's nucleotide sequence