Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00324

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00323 and MPMX26_00324 are separated by 272 nucleotidesMPMX26_00324 and MPMX26_00325 are separated by 61 nucleotides MPMX26_00323: MPMX26_00323 - Porin-like protein NicP, at 351,870 to 353,162 _00323 MPMX26_00324: MPMX26_00324 - 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase, at 353,435 to 354,292 _00324 MPMX26_00325: MPMX26_00325 - hypothetical protein, at 354,354 to 355,034 _00325 Position (kb) 353 354 355Strain fitness (log2 ratio) -1 0 1 2 3at 352.624 kb on + strand, within MPMX26_00323at 352.683 kb on + strand, within MPMX26_00323at 352.694 kb on + strand, within MPMX26_00323at 352.694 kb on + strand, within MPMX26_00323at 352.694 kb on + strand, within MPMX26_00323at 352.730 kb on + strand, within MPMX26_00323at 352.732 kb on + strand, within MPMX26_00323at 352.875 kb on + strand, within MPMX26_00323at 352.891 kb on + strand, within MPMX26_00323at 352.891 kb on + strand, within MPMX26_00323at 352.891 kb on + strand, within MPMX26_00323at 352.923 kb on + strand, within MPMX26_00323at 352.923 kb on + strand, within MPMX26_00323at 353.018 kb on + strand, within MPMX26_00323at 353.024 kb on + strand, within MPMX26_00323at 353.024 kb on + strand, within MPMX26_00323at 353.056 kb on + strandat 353.056 kb on + strandat 353.072 kb on + strandat 353.452 kb on - strandat 353.507 kb on + strandat 353.555 kb on + strand, within MPMX26_00324at 353.617 kb on + strand, within MPMX26_00324at 353.638 kb on + strand, within MPMX26_00324at 353.696 kb on + strand, within MPMX26_00324at 353.724 kb on + strand, within MPMX26_00324at 353.862 kb on + strand, within MPMX26_00324at 354.159 kb on + strand, within MPMX26_00324at 354.167 kb on + strand, within MPMX26_00324at 354.169 kb on + strand, within MPMX26_00324at 354.201 kb on + strand, within MPMX26_00324at 354.247 kb on + strandat 354.285 kb on + strandat 354.374 kb on - strandat 354.581 kb on - strand, within MPMX26_00325at 354.611 kb on - strand, within MPMX26_00325at 354.618 kb on - strand, within MPMX26_00325at 354.623 kb on - strand, within MPMX26_00325at 354.797 kb on - strand, within MPMX26_00325at 354.874 kb on - strand, within MPMX26_00325at 354.888 kb on - strand, within MPMX26_00325at 354.893 kb on - strand, within MPMX26_00325at 354.919 kb on - strand, within MPMX26_00325at 354.931 kb on - strand, within MPMX26_00325at 354.945 kb on + strand, within MPMX26_00325at 354.953 kb on - strand, within MPMX26_00325at 354.953 kb on - strand, within MPMX26_00325at 354.953 kb on - strand, within MPMX26_00325at 354.953 kb on - strand, within MPMX26_00325at 354.953 kb on - strand, within MPMX26_00325at 354.953 kb on - strand, within MPMX26_00325at 354.953 kb on - strand, within MPMX26_00325at 354.953 kb on - strand, within MPMX26_00325

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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352,624 + MPMX26_00323 0.58 +0.5
352,683 + MPMX26_00323 0.63 +1.6
352,694 + MPMX26_00323 0.64 -0.8
352,694 + MPMX26_00323 0.64 +0.2
352,694 + MPMX26_00323 0.64 +0.2
352,730 + MPMX26_00323 0.67 +0.1
352,732 + MPMX26_00323 0.67 -0.3
352,875 + MPMX26_00323 0.78 -0.0
352,891 + MPMX26_00323 0.79 +0.0
352,891 + MPMX26_00323 0.79 -0.1
352,891 + MPMX26_00323 0.79 +0.0
352,923 + MPMX26_00323 0.81 +0.2
352,923 + MPMX26_00323 0.81 -0.6
353,018 + MPMX26_00323 0.89 +1.8
353,024 + MPMX26_00323 0.89 +1.0
353,024 + MPMX26_00323 0.89 +1.0
353,056 + +0.8
353,056 + +0.8
353,072 + +0.9
353,452 - -0.2
353,507 + +0.2
353,555 + MPMX26_00324 0.14 +0.5
353,617 + MPMX26_00324 0.21 +0.5
353,638 + MPMX26_00324 0.24 +1.7
353,696 + MPMX26_00324 0.30 +0.5
353,724 + MPMX26_00324 0.34 +1.2
353,862 + MPMX26_00324 0.50 -1.3
354,159 + MPMX26_00324 0.84 +0.0
354,167 + MPMX26_00324 0.85 -0.2
354,169 + MPMX26_00324 0.86 +0.3
354,201 + MPMX26_00324 0.89 +0.4
354,247 + +0.2
354,285 + -0.8
354,374 - +0.0
354,581 - MPMX26_00325 0.33 -0.2
354,611 - MPMX26_00325 0.38 +1.2
354,618 - MPMX26_00325 0.39 +1.0
354,623 - MPMX26_00325 0.40 -0.2
354,797 - MPMX26_00325 0.65 +1.6
354,874 - MPMX26_00325 0.76 -0.2
354,888 - MPMX26_00325 0.78 +0.0
354,893 - MPMX26_00325 0.79 +0.5
354,919 - MPMX26_00325 0.83 -0.9
354,931 - MPMX26_00325 0.85 -0.3
354,945 + MPMX26_00325 0.87 -0.8
354,953 - MPMX26_00325 0.88 -0.3
354,953 - MPMX26_00325 0.88 +0.8
354,953 - MPMX26_00325 0.88 +0.1
354,953 - MPMX26_00325 0.88 -0.3
354,953 - MPMX26_00325 0.88 -0.2
354,953 - MPMX26_00325 0.88 -1.3
354,953 - MPMX26_00325 0.88 +2.8
354,953 - MPMX26_00325 0.88 +2.8

Or see this region's nucleotide sequence