Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00263

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00262 and MPMX26_00263 are separated by 16 nucleotidesMPMX26_00263 and MPMX26_00264 are separated by 8 nucleotidesMPMX26_00264 and MPMX26_00265 are separated by 182 nucleotides MPMX26_00262: MPMX26_00262 - hypothetical protein, at 282,334 to 283,686 _00262 MPMX26_00263: MPMX26_00263 - ATP-dependent DNA helicase Rep, at 283,703 to 285,205 _00263 MPMX26_00264: MPMX26_00264 - Histidine biosynthesis bifunctional protein HisIE, at 285,214 to 285,996 _00264 MPMX26_00265: MPMX26_00265 - putative protein kinase UbiB, at 286,179 to 287,798 _00265 Position (kb) 283 284 285 286Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 282.808 kb on - strand, within MPMX26_00262at 282.838 kb on - strand, within MPMX26_00262at 282.874 kb on - strand, within MPMX26_00262at 282.883 kb on - strand, within MPMX26_00262at 282.895 kb on - strand, within MPMX26_00262at 282.976 kb on - strand, within MPMX26_00262at 283.336 kb on - strand, within MPMX26_00262at 283.336 kb on - strand, within MPMX26_00262at 283.395 kb on - strand, within MPMX26_00262at 283.451 kb on + strand, within MPMX26_00262at 283.483 kb on - strand, within MPMX26_00262at 283.543 kb on - strand, within MPMX26_00262at 283.548 kb on - strand, within MPMX26_00262at 283.549 kb on - strand, within MPMX26_00262at 283.575 kb on - strandat 283.681 kb on - strandat 283.681 kb on - strandat 283.681 kb on - strandat 283.742 kb on - strandat 283.742 kb on - strandat 283.742 kb on - strandat 283.742 kb on - strandat 283.742 kb on - strandat 283.767 kb on - strandat 283.767 kb on - strandat 283.795 kb on - strandat 283.797 kb on - strandat 283.826 kb on - strandat 283.903 kb on - strand, within MPMX26_00263at 283.903 kb on - strand, within MPMX26_00263at 283.903 kb on - strand, within MPMX26_00263at 283.908 kb on - strand, within MPMX26_00263at 283.909 kb on - strand, within MPMX26_00263at 283.990 kb on - strand, within MPMX26_00263at 284.018 kb on - strand, within MPMX26_00263at 284.018 kb on - strand, within MPMX26_00263at 284.084 kb on - strand, within MPMX26_00263at 284.084 kb on - strand, within MPMX26_00263at 284.120 kb on - strand, within MPMX26_00263at 284.120 kb on - strand, within MPMX26_00263at 284.120 kb on - strand, within MPMX26_00263at 284.120 kb on - strand, within MPMX26_00263at 284.120 kb on - strand, within MPMX26_00263at 284.129 kb on - strand, within MPMX26_00263at 284.129 kb on - strand, within MPMX26_00263at 284.129 kb on - strand, within MPMX26_00263at 284.166 kb on - strand, within MPMX26_00263at 284.166 kb on - strand, within MPMX26_00263at 284.197 kb on + strand, within MPMX26_00263at 284.205 kb on - strand, within MPMX26_00263at 284.216 kb on - strand, within MPMX26_00263at 284.221 kb on - strand, within MPMX26_00263at 284.221 kb on - strand, within MPMX26_00263at 284.251 kb on - strand, within MPMX26_00263at 284.251 kb on - strand, within MPMX26_00263at 284.251 kb on - strand, within MPMX26_00263at 284.359 kb on - strand, within MPMX26_00263at 284.392 kb on - strand, within MPMX26_00263at 284.437 kb on - strand, within MPMX26_00263at 284.442 kb on - strand, within MPMX26_00263at 284.522 kb on - strand, within MPMX26_00263at 284.538 kb on - strand, within MPMX26_00263at 284.545 kb on - strand, within MPMX26_00263at 284.555 kb on - strand, within MPMX26_00263at 284.579 kb on - strand, within MPMX26_00263at 284.584 kb on - strand, within MPMX26_00263at 284.600 kb on - strand, within MPMX26_00263at 284.613 kb on - strand, within MPMX26_00263at 284.613 kb on - strand, within MPMX26_00263at 284.613 kb on - strand, within MPMX26_00263at 284.613 kb on - strand, within MPMX26_00263at 284.658 kb on - strand, within MPMX26_00263at 284.658 kb on - strand, within MPMX26_00263at 284.658 kb on - strand, within MPMX26_00263at 284.658 kb on - strand, within MPMX26_00263at 284.658 kb on - strand, within MPMX26_00263at 284.658 kb on - strand, within MPMX26_00263at 284.658 kb on - strand, within MPMX26_00263at 284.658 kb on - strand, within MPMX26_00263at 284.663 kb on - strand, within MPMX26_00263at 284.663 kb on - strand, within MPMX26_00263at 284.663 kb on - strand, within MPMX26_00263at 284.671 kb on - strand, within MPMX26_00263at 284.684 kb on - strand, within MPMX26_00263at 284.684 kb on - strand, within MPMX26_00263at 284.686 kb on - strand, within MPMX26_00263at 284.686 kb on - strand, within MPMX26_00263at 284.754 kb on - strand, within MPMX26_00263at 284.763 kb on - strand, within MPMX26_00263at 284.831 kb on - strand, within MPMX26_00263at 284.831 kb on - strand, within MPMX26_00263at 284.873 kb on - strand, within MPMX26_00263at 285.051 kb on - strand, within MPMX26_00263at 285.057 kb on - strandat 285.057 kb on - strandat 285.057 kb on - strandat 285.090 kb on - strandat 285.090 kb on - strandat 285.090 kb on - strandat 285.091 kb on - strandat 285.096 kb on - strandat 285.098 kb on - strandat 285.113 kb on - strandat 285.124 kb on - strandat 285.132 kb on - strandat 285.132 kb on - strandat 285.160 kb on - strandat 285.177 kb on - strandat 285.177 kb on - strandat 285.177 kb on - strandat 285.177 kb on - strandat 285.177 kb on - strandat 285.220 kb on - strandat 285.225 kb on - strandat 285.251 kb on - strandat 285.255 kb on - strandat 285.262 kb on - strandat 285.262 kb on - strandat 285.321 kb on - strand, within MPMX26_00264at 285.323 kb on - strand, within MPMX26_00264at 285.352 kb on - strand, within MPMX26_00264at 285.360 kb on - strand, within MPMX26_00264at 285.360 kb on - strand, within MPMX26_00264at 285.511 kb on - strand, within MPMX26_00264at 285.511 kb on - strand, within MPMX26_00264at 285.511 kb on - strand, within MPMX26_00264at 285.511 kb on - strand, within MPMX26_00264at 285.511 kb on - strand, within MPMX26_00264at 285.523 kb on - strand, within MPMX26_00264at 285.529 kb on - strand, within MPMX26_00264at 285.550 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.585 kb on - strand, within MPMX26_00264at 285.637 kb on - strand, within MPMX26_00264at 285.637 kb on - strand, within MPMX26_00264at 285.666 kb on - strand, within MPMX26_00264at 285.666 kb on - strand, within MPMX26_00264at 285.707 kb on - strand, within MPMX26_00264at 285.724 kb on - strand, within MPMX26_00264at 285.768 kb on - strand, within MPMX26_00264at 285.777 kb on - strand, within MPMX26_00264at 285.799 kb on - strand, within MPMX26_00264at 285.800 kb on - strand, within MPMX26_00264at 285.807 kb on - strand, within MPMX26_00264at 285.807 kb on - strand, within MPMX26_00264at 285.807 kb on - strand, within MPMX26_00264at 285.807 kb on - strand, within MPMX26_00264at 285.807 kb on - strand, within MPMX26_00264at 285.809 kb on - strand, within MPMX26_00264at 285.819 kb on - strand, within MPMX26_00264at 285.819 kb on - strand, within MPMX26_00264at 285.844 kb on - strand, within MPMX26_00264at 285.844 kb on - strand, within MPMX26_00264at 285.844 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.846 kb on - strand, within MPMX26_00264at 285.876 kb on - strand, within MPMX26_00264at 285.876 kb on - strand, within MPMX26_00264at 285.878 kb on - strand, within MPMX26_00264at 285.879 kb on - strand, within MPMX26_00264at 285.879 kb on - strand, within MPMX26_00264at 285.925 kb on - strandat 285.938 kb on - strandat 285.938 kb on - strandat 285.938 kb on - strandat 285.938 kb on - strandat 285.938 kb on - strandat 285.938 kb on - strandat 285.957 kb on - strandat 285.971 kb on - strandat 286.035 kb on - strandat 286.063 kb on - strandat 286.065 kb on - strandat 286.066 kb on - strandat 286.068 kb on - strandat 286.068 kb on - strandat 286.083 kb on - strandat 286.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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282,808 - MPMX26_00262 0.35 +0.0
282,838 - MPMX26_00262 0.37 -0.3
282,874 - MPMX26_00262 0.40 +0.6
282,883 - MPMX26_00262 0.41 +0.0
282,895 - MPMX26_00262 0.41 +2.8
282,976 - MPMX26_00262 0.47 +3.8
283,336 - MPMX26_00262 0.74 +0.0
283,336 - MPMX26_00262 0.74 +0.5
283,395 - MPMX26_00262 0.78 +1.6
283,451 + MPMX26_00262 0.83 +0.4
283,483 - MPMX26_00262 0.85 +0.7
283,543 - MPMX26_00262 0.89 -1.2
283,548 - MPMX26_00262 0.90 +0.5
283,549 - MPMX26_00262 0.90 -0.1
283,575 - +0.6
283,681 - -1.0
283,681 - +0.8
283,681 - +2.1
283,742 - -0.3
283,742 - +0.4
283,742 - -0.2
283,742 - -0.8
283,742 - -0.5
283,767 - +0.2
283,767 - +0.6
283,795 - +0.0
283,797 - +0.5
283,826 - +0.7
283,903 - MPMX26_00263 0.13 +1.8
283,903 - MPMX26_00263 0.13 -0.5
283,903 - MPMX26_00263 0.13 -0.4
283,908 - MPMX26_00263 0.14 +1.8
283,909 - MPMX26_00263 0.14 -0.1
283,990 - MPMX26_00263 0.19 +0.1
284,018 - MPMX26_00263 0.21 -0.5
284,018 - MPMX26_00263 0.21 -0.3
284,084 - MPMX26_00263 0.25 -0.5
284,084 - MPMX26_00263 0.25 -0.1
284,120 - MPMX26_00263 0.28 -0.2
284,120 - MPMX26_00263 0.28 -0.4
284,120 - MPMX26_00263 0.28 -0.1
284,120 - MPMX26_00263 0.28 -0.6
284,120 - MPMX26_00263 0.28 -0.6
284,129 - MPMX26_00263 0.28 +0.2
284,129 - MPMX26_00263 0.28 -0.9
284,129 - MPMX26_00263 0.28 -0.4
284,166 - MPMX26_00263 0.31 -0.2
284,166 - MPMX26_00263 0.31 +0.0
284,197 + MPMX26_00263 0.33 -0.8
284,205 - MPMX26_00263 0.33 +0.6
284,216 - MPMX26_00263 0.34 -0.5
284,221 - MPMX26_00263 0.34 -0.3
284,221 - MPMX26_00263 0.34 +0.0
284,251 - MPMX26_00263 0.36 +0.7
284,251 - MPMX26_00263 0.36 +0.2
284,251 - MPMX26_00263 0.36 +2.1
284,359 - MPMX26_00263 0.44 -0.7
284,392 - MPMX26_00263 0.46 +0.2
284,437 - MPMX26_00263 0.49 -0.6
284,442 - MPMX26_00263 0.49 -0.3
284,522 - MPMX26_00263 0.54 +0.3
284,538 - MPMX26_00263 0.56 -0.3
284,545 - MPMX26_00263 0.56 -0.3
284,555 - MPMX26_00263 0.57 +0.1
284,579 - MPMX26_00263 0.58 +0.4
284,584 - MPMX26_00263 0.59 +0.1
284,600 - MPMX26_00263 0.60 -0.2
284,613 - MPMX26_00263 0.61 -0.9
284,613 - MPMX26_00263 0.61 -0.8
284,613 - MPMX26_00263 0.61 +0.3
284,613 - MPMX26_00263 0.61 -0.5
284,658 - MPMX26_00263 0.64 -0.9
284,658 - MPMX26_00263 0.64 -0.2
284,658 - MPMX26_00263 0.64 +0.1
284,658 - MPMX26_00263 0.64 -1.8
284,658 - MPMX26_00263 0.64 +1.2
284,658 - MPMX26_00263 0.64 -0.4
284,658 - MPMX26_00263 0.64 +1.5
284,658 - MPMX26_00263 0.64 +0.1
284,663 - MPMX26_00263 0.64 -0.6
284,663 - MPMX26_00263 0.64 +0.0
284,663 - MPMX26_00263 0.64 +0.1
284,671 - MPMX26_00263 0.64 -0.3
284,684 - MPMX26_00263 0.65 -0.9
284,684 - MPMX26_00263 0.65 -0.8
284,686 - MPMX26_00263 0.65 -0.5
284,686 - MPMX26_00263 0.65 -0.1
284,754 - MPMX26_00263 0.70 +0.8
284,763 - MPMX26_00263 0.71 -0.3
284,831 - MPMX26_00263 0.75 -1.2
284,831 - MPMX26_00263 0.75 +0.3
284,873 - MPMX26_00263 0.78 +0.3
285,051 - MPMX26_00263 0.90 -1.0
285,057 - -1.5
285,057 - +0.6
285,057 - +0.8
285,090 - +0.6
285,090 - +0.6
285,090 - -1.3
285,091 - -1.4
285,096 - -0.5
285,098 - +0.1
285,113 - +0.2
285,124 - -0.2
285,132 - +0.4
285,132 - -1.3
285,160 - -0.7
285,177 - +0.9
285,177 - +0.9
285,177 - +0.4
285,177 - +0.1
285,177 - -0.7
285,220 - -0.4
285,225 - +0.6
285,251 - -0.2
285,255 - -1.1
285,262 - -0.3
285,262 - -0.9
285,321 - MPMX26_00264 0.14 -0.2
285,323 - MPMX26_00264 0.14 -0.1
285,352 - MPMX26_00264 0.18 -0.5
285,360 - MPMX26_00264 0.19 -0.2
285,360 - MPMX26_00264 0.19 +0.3
285,511 - MPMX26_00264 0.38 -0.7
285,511 - MPMX26_00264 0.38 -0.6
285,511 - MPMX26_00264 0.38 +0.3
285,511 - MPMX26_00264 0.38 -0.3
285,511 - MPMX26_00264 0.38 -0.6
285,523 - MPMX26_00264 0.39 -0.1
285,529 - MPMX26_00264 0.40 -0.2
285,550 - MPMX26_00264 0.43 -0.6
285,585 - MPMX26_00264 0.47 -1.0
285,585 - MPMX26_00264 0.47 -0.2
285,585 - MPMX26_00264 0.47 -1.2
285,585 - MPMX26_00264 0.47 -0.5
285,585 - MPMX26_00264 0.47 -1.5
285,585 - MPMX26_00264 0.47 -0.2
285,585 - MPMX26_00264 0.47 -0.0
285,585 - MPMX26_00264 0.47 -1.6
285,585 - MPMX26_00264 0.47 -0.6
285,585 - MPMX26_00264 0.47 -0.7
285,585 - MPMX26_00264 0.47 -0.9
285,585 - MPMX26_00264 0.47 +0.4
285,585 - MPMX26_00264 0.47 -1.0
285,585 - MPMX26_00264 0.47 -0.6
285,585 - MPMX26_00264 0.47 +0.7
285,637 - MPMX26_00264 0.54 -1.6
285,637 - MPMX26_00264 0.54 +0.3
285,666 - MPMX26_00264 0.58 -0.4
285,666 - MPMX26_00264 0.58 -0.3
285,707 - MPMX26_00264 0.63 -0.4
285,724 - MPMX26_00264 0.65 +0.6
285,768 - MPMX26_00264 0.71 -0.3
285,777 - MPMX26_00264 0.72 -0.2
285,799 - MPMX26_00264 0.75 -0.8
285,800 - MPMX26_00264 0.75 -0.5
285,807 - MPMX26_00264 0.76 +1.2
285,807 - MPMX26_00264 0.76 +0.9
285,807 - MPMX26_00264 0.76 -1.3
285,807 - MPMX26_00264 0.76 +0.4
285,807 - MPMX26_00264 0.76 -0.6
285,809 - MPMX26_00264 0.76 -0.2
285,819 - MPMX26_00264 0.77 -1.1
285,819 - MPMX26_00264 0.77 -1.1
285,844 - MPMX26_00264 0.80 -0.7
285,844 - MPMX26_00264 0.80 -0.0
285,844 - MPMX26_00264 0.80 -0.6
285,846 - MPMX26_00264 0.81 +0.2
285,846 - MPMX26_00264 0.81 -1.4
285,846 - MPMX26_00264 0.81 +2.8
285,846 - MPMX26_00264 0.81 +0.4
285,846 - MPMX26_00264 0.81 -0.2
285,846 - MPMX26_00264 0.81 +0.3
285,846 - MPMX26_00264 0.81 -0.3
285,846 - MPMX26_00264 0.81 -0.0
285,846 - MPMX26_00264 0.81 -1.2
285,846 - MPMX26_00264 0.81 -0.5
285,846 - MPMX26_00264 0.81 +0.1
285,846 - MPMX26_00264 0.81 -0.3
285,846 - MPMX26_00264 0.81 -0.6
285,846 - MPMX26_00264 0.81 -0.0
285,846 - MPMX26_00264 0.81 -0.6
285,876 - MPMX26_00264 0.85 -1.3
285,876 - MPMX26_00264 0.85 -0.8
285,878 - MPMX26_00264 0.85 +0.7
285,879 - MPMX26_00264 0.85 -0.4
285,879 - MPMX26_00264 0.85 -0.6
285,925 - -0.5
285,938 - +0.3
285,938 - +0.2
285,938 - -0.6
285,938 - -1.1
285,938 - -1.4
285,938 - -0.3
285,957 - -0.0
285,971 - +0.7
286,035 - +0.8
286,063 - +0.2
286,065 - -0.5
286,066 - +0.6
286,068 - -0.6
286,068 - -1.1
286,083 - -1.1
286,145 - +1.0

Or see this region's nucleotide sequence