Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00161

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00160 and MPMX26_00161 are separated by 19 nucleotidesMPMX26_00161 and MPMX26_00162 are separated by 0 nucleotides MPMX26_00160: MPMX26_00160 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 172,261 to 173,811 _00160 MPMX26_00161: MPMX26_00161 - putative CtpA-like serine protease, at 173,831 to 175,018 _00161 MPMX26_00162: MPMX26_00162 - Regulatory protein AtoC, at 175,019 to 176,434 _00162 Position (kb) 173 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 173.796 kb on + strandat 173.796 kb on + strandat 173.796 kb on + strandat 173.796 kb on + strandat 173.796 kb on + strandat 175.000 kb on - strandat 175.037 kb on - strandat 175.037 kb on - strandat 175.117 kb on - strandat 175.117 kb on - strandat 175.119 kb on + strandat 175.125 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.132 kb on - strandat 175.132 kb on - strandat 175.132 kb on - strandat 175.132 kb on - strandat 175.132 kb on - strandat 175.137 kb on - strandat 175.144 kb on - strandat 175.234 kb on - strand, within MPMX26_00162at 175.287 kb on - strand, within MPMX26_00162at 175.287 kb on - strand, within MPMX26_00162at 175.287 kb on - strand, within MPMX26_00162at 175.294 kb on - strand, within MPMX26_00162at 175.365 kb on - strand, within MPMX26_00162at 175.502 kb on - strand, within MPMX26_00162at 175.517 kb on - strand, within MPMX26_00162at 175.594 kb on - strand, within MPMX26_00162at 175.688 kb on - strand, within MPMX26_00162at 175.688 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.754 kb on - strand, within MPMX26_00162at 175.754 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.823 kb on - strand, within MPMX26_00162at 175.837 kb on - strand, within MPMX26_00162at 175.837 kb on - strand, within MPMX26_00162at 175.855 kb on - strand, within MPMX26_00162at 175.877 kb on - strand, within MPMX26_00162at 175.904 kb on - strand, within MPMX26_00162at 175.904 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.943 kb on - strand, within MPMX26_00162at 175.945 kb on - strand, within MPMX26_00162at 175.945 kb on - strand, within MPMX26_00162at 175.956 kb on - strand, within MPMX26_00162at 176.015 kb on - strand, within MPMX26_00162

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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173,796 + -0.5
173,796 + -0.8
173,796 + +0.3
173,796 + +0.7
173,796 + +0.1
175,000 - +0.6
175,037 - +0.4
175,037 - +0.2
175,117 - +0.7
175,117 - -0.2
175,119 + +1.3
175,125 - +1.1
175,127 - -0.1
175,127 - +0.1
175,127 - +1.0
175,127 - +1.0
175,127 - +0.1
175,127 - +0.5
175,127 - +0.4
175,127 - +0.8
175,127 - +0.5
175,127 - +0.7
175,127 - +0.8
175,127 - +0.3
175,127 - -0.5
175,127 - +0.5
175,132 - +0.3
175,132 - +0.6
175,132 - +0.2
175,132 - +0.3
175,132 - +0.1
175,137 - +1.0
175,144 - -2.5
175,234 - MPMX26_00162 0.15 +0.2
175,287 - MPMX26_00162 0.19 +0.7
175,287 - MPMX26_00162 0.19 +0.8
175,287 - MPMX26_00162 0.19 +0.1
175,294 - MPMX26_00162 0.19 +0.2
175,365 - MPMX26_00162 0.24 -0.5
175,502 - MPMX26_00162 0.34 -0.9
175,517 - MPMX26_00162 0.35 +1.2
175,594 - MPMX26_00162 0.41 +0.5
175,688 - MPMX26_00162 0.47 +1.7
175,688 - MPMX26_00162 0.47 -0.2
175,703 - MPMX26_00162 0.48 +0.4
175,703 - MPMX26_00162 0.48 -0.7
175,703 - MPMX26_00162 0.48 +0.5
175,754 - MPMX26_00162 0.52 +1.9
175,754 - MPMX26_00162 0.52 +1.6
175,774 - MPMX26_00162 0.53 +0.2
175,774 - MPMX26_00162 0.53 +0.6
175,774 - MPMX26_00162 0.53 +0.8
175,774 - MPMX26_00162 0.53 +0.2
175,823 - MPMX26_00162 0.57 +0.5
175,837 - MPMX26_00162 0.58 +0.5
175,837 - MPMX26_00162 0.58 -2.5
175,855 - MPMX26_00162 0.59 +0.5
175,877 - MPMX26_00162 0.61 +1.5
175,904 - MPMX26_00162 0.62 +0.8
175,904 - MPMX26_00162 0.62 +1.1
175,918 - MPMX26_00162 0.63 -1.2
175,918 - MPMX26_00162 0.63 +0.8
175,918 - MPMX26_00162 0.63 +0.5
175,918 - MPMX26_00162 0.63 -0.1
175,918 - MPMX26_00162 0.63 +0.1
175,918 - MPMX26_00162 0.63 +0.0
175,918 - MPMX26_00162 0.63 +0.1
175,918 - MPMX26_00162 0.63 +0.4
175,943 - MPMX26_00162 0.65 +0.2
175,945 - MPMX26_00162 0.65 +0.1
175,945 - MPMX26_00162 0.65 +0.9
175,956 - MPMX26_00162 0.66 +1.1
176,015 - MPMX26_00162 0.70 +1.0

Or see this region's nucleotide sequence