Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00158

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00157 and MPMX26_00158 are separated by 154 nucleotidesMPMX26_00158 and MPMX26_00159 overlap by 1 nucleotides MPMX26_00157: MPMX26_00157 - cytosol aminopeptidase, at 168,369 to 169,817 _00157 MPMX26_00158: MPMX26_00158 - Lipopolysaccharide export system permease protein LptF, at 169,972 to 171,072 _00158 MPMX26_00159: MPMX26_00159 - Lipopolysaccharide export system permease protein LptG, at 171,072 to 172,142 _00159 Position (kb) 169 170 171 172Strain fitness (log2 ratio) -2 -1 0 1 2 3at 168.975 kb on - strand, within MPMX26_00157at 168.977 kb on - strand, within MPMX26_00157at 168.993 kb on - strand, within MPMX26_00157at 168.993 kb on - strand, within MPMX26_00157at 168.993 kb on - strand, within MPMX26_00157at 168.993 kb on - strand, within MPMX26_00157at 168.993 kb on - strand, within MPMX26_00157at 168.993 kb on - strand, within MPMX26_00157at 168.993 kb on - strand, within MPMX26_00157at 169.025 kb on - strand, within MPMX26_00157at 169.035 kb on - strand, within MPMX26_00157at 169.057 kb on - strand, within MPMX26_00157at 169.057 kb on - strand, within MPMX26_00157at 169.064 kb on - strand, within MPMX26_00157at 169.069 kb on - strand, within MPMX26_00157at 169.069 kb on - strand, within MPMX26_00157at 169.071 kb on - strand, within MPMX26_00157at 169.071 kb on - strand, within MPMX26_00157at 169.089 kb on - strand, within MPMX26_00157at 169.113 kb on - strand, within MPMX26_00157at 169.135 kb on - strand, within MPMX26_00157at 169.136 kb on + strand, within MPMX26_00157at 169.144 kb on - strand, within MPMX26_00157at 169.145 kb on - strand, within MPMX26_00157at 169.145 kb on - strand, within MPMX26_00157at 169.145 kb on - strand, within MPMX26_00157at 169.145 kb on - strand, within MPMX26_00157at 169.145 kb on - strand, within MPMX26_00157at 169.145 kb on - strand, within MPMX26_00157at 169.145 kb on - strand, within MPMX26_00157at 169.145 kb on - strand, within MPMX26_00157at 169.152 kb on - strand, within MPMX26_00157at 169.191 kb on - strand, within MPMX26_00157at 169.191 kb on - strand, within MPMX26_00157at 169.191 kb on - strand, within MPMX26_00157at 169.210 kb on - strand, within MPMX26_00157at 169.213 kb on - strand, within MPMX26_00157at 169.218 kb on - strand, within MPMX26_00157at 169.218 kb on - strand, within MPMX26_00157at 169.218 kb on - strand, within MPMX26_00157at 169.228 kb on - strand, within MPMX26_00157at 169.228 kb on - strand, within MPMX26_00157at 169.228 kb on - strand, within MPMX26_00157at 169.242 kb on - strand, within MPMX26_00157at 169.251 kb on - strand, within MPMX26_00157at 169.251 kb on - strand, within MPMX26_00157at 169.251 kb on - strand, within MPMX26_00157at 169.299 kb on - strand, within MPMX26_00157at 169.305 kb on - strand, within MPMX26_00157at 169.305 kb on - strand, within MPMX26_00157at 169.305 kb on - strand, within MPMX26_00157at 169.305 kb on - strand, within MPMX26_00157at 169.331 kb on - strand, within MPMX26_00157at 169.334 kb on - strand, within MPMX26_00157at 169.351 kb on - strand, within MPMX26_00157at 169.351 kb on - strand, within MPMX26_00157at 169.366 kb on - strand, within MPMX26_00157at 169.366 kb on - strand, within MPMX26_00157at 169.366 kb on - strand, within MPMX26_00157at 169.368 kb on + strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.376 kb on - strand, within MPMX26_00157at 169.383 kb on - strand, within MPMX26_00157at 169.393 kb on - strand, within MPMX26_00157at 169.393 kb on - strand, within MPMX26_00157at 169.393 kb on - strand, within MPMX26_00157at 169.445 kb on - strand, within MPMX26_00157at 169.455 kb on - strand, within MPMX26_00157at 169.584 kb on - strand, within MPMX26_00157at 169.608 kb on + strand, within MPMX26_00157at 169.608 kb on - strand, within MPMX26_00157at 169.610 kb on + strand, within MPMX26_00157at 169.613 kb on - strand, within MPMX26_00157at 169.618 kb on - strand, within MPMX26_00157at 169.623 kb on - strand, within MPMX26_00157at 169.623 kb on - strand, within MPMX26_00157at 169.625 kb on - strand, within MPMX26_00157at 169.625 kb on - strand, within MPMX26_00157at 169.625 kb on - strand, within MPMX26_00157at 169.627 kb on + strand, within MPMX26_00157at 169.628 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.635 kb on - strand, within MPMX26_00157at 169.669 kb on + strand, within MPMX26_00157at 169.669 kb on + strand, within MPMX26_00157at 169.677 kb on - strandat 169.677 kb on - strandat 169.677 kb on - strandat 169.677 kb on - strandat 169.677 kb on - strandat 169.677 kb on - strandat 169.677 kb on - strandat 169.679 kb on + strandat 169.679 kb on + strandat 169.679 kb on + strandat 169.687 kb on - strandat 169.687 kb on - strandat 169.698 kb on - strandat 169.698 kb on - strandat 169.704 kb on - strandat 169.721 kb on - strandat 169.731 kb on - strandat 169.731 kb on - strandat 169.731 kb on - strandat 169.741 kb on - strandat 169.741 kb on - strandat 169.753 kb on + strandat 169.761 kb on + strandat 169.769 kb on - strandat 169.769 kb on - strandat 169.779 kb on + strandat 169.779 kb on + strandat 169.784 kb on + strandat 169.784 kb on + strandat 169.787 kb on - strandat 169.789 kb on + strandat 169.797 kb on - strandat 169.889 kb on + strandat 169.927 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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168,975 - MPMX26_00157 0.42 -1.1
168,977 - MPMX26_00157 0.42 -0.0
168,993 - MPMX26_00157 0.43 +0.5
168,993 - MPMX26_00157 0.43 +0.2
168,993 - MPMX26_00157 0.43 -0.6
168,993 - MPMX26_00157 0.43 -0.3
168,993 - MPMX26_00157 0.43 -0.1
168,993 - MPMX26_00157 0.43 -0.3
168,993 - MPMX26_00157 0.43 +0.2
169,025 - MPMX26_00157 0.45 -0.5
169,035 - MPMX26_00157 0.46 -0.0
169,057 - MPMX26_00157 0.47 -1.1
169,057 - MPMX26_00157 0.47 -1.5
169,064 - MPMX26_00157 0.48 -0.1
169,069 - MPMX26_00157 0.48 +0.4
169,069 - MPMX26_00157 0.48 -0.9
169,071 - MPMX26_00157 0.48 +0.6
169,071 - MPMX26_00157 0.48 -0.3
169,089 - MPMX26_00157 0.50 -0.9
169,113 - MPMX26_00157 0.51 -0.4
169,135 - MPMX26_00157 0.53 +0.4
169,136 + MPMX26_00157 0.53 +1.2
169,144 - MPMX26_00157 0.53 -0.7
169,145 - MPMX26_00157 0.54 -0.2
169,145 - MPMX26_00157 0.54 -1.9
169,145 - MPMX26_00157 0.54 -0.1
169,145 - MPMX26_00157 0.54 -0.2
169,145 - MPMX26_00157 0.54 -0.2
169,145 - MPMX26_00157 0.54 -1.6
169,145 - MPMX26_00157 0.54 -0.6
169,145 - MPMX26_00157 0.54 +0.3
169,152 - MPMX26_00157 0.54 +0.8
169,191 - MPMX26_00157 0.57 -0.9
169,191 - MPMX26_00157 0.57 -0.6
169,191 - MPMX26_00157 0.57 -0.1
169,210 - MPMX26_00157 0.58 -0.4
169,213 - MPMX26_00157 0.58 -0.6
169,218 - MPMX26_00157 0.59 -0.2
169,218 - MPMX26_00157 0.59 +0.2
169,218 - MPMX26_00157 0.59 -0.6
169,228 - MPMX26_00157 0.59 -0.2
169,228 - MPMX26_00157 0.59 -0.4
169,228 - MPMX26_00157 0.59 +0.3
169,242 - MPMX26_00157 0.60 -0.0
169,251 - MPMX26_00157 0.61 +0.1
169,251 - MPMX26_00157 0.61 -0.6
169,251 - MPMX26_00157 0.61 +0.5
169,299 - MPMX26_00157 0.64 -0.1
169,305 - MPMX26_00157 0.65 +0.1
169,305 - MPMX26_00157 0.65 -1.8
169,305 - MPMX26_00157 0.65 -1.3
169,305 - MPMX26_00157 0.65 -1.6
169,331 - MPMX26_00157 0.66 +0.9
169,334 - MPMX26_00157 0.67 -0.2
169,351 - MPMX26_00157 0.68 -0.6
169,351 - MPMX26_00157 0.68 -0.5
169,366 - MPMX26_00157 0.69 +0.2
169,366 - MPMX26_00157 0.69 +1.5
169,366 - MPMX26_00157 0.69 +0.0
169,368 + MPMX26_00157 0.69 -1.0
169,376 - MPMX26_00157 0.69 -0.6
169,376 - MPMX26_00157 0.69 -0.9
169,376 - MPMX26_00157 0.69 +1.0
169,376 - MPMX26_00157 0.69 -1.6
169,376 - MPMX26_00157 0.69 +1.2
169,376 - MPMX26_00157 0.69 -0.2
169,376 - MPMX26_00157 0.69 +0.3
169,376 - MPMX26_00157 0.69 -0.6
169,376 - MPMX26_00157 0.69 +0.7
169,376 - MPMX26_00157 0.69 -0.5
169,376 - MPMX26_00157 0.69 +0.2
169,376 - MPMX26_00157 0.69 -0.8
169,376 - MPMX26_00157 0.69 -0.5
169,376 - MPMX26_00157 0.69 +0.1
169,376 - MPMX26_00157 0.69 -0.8
169,376 - MPMX26_00157 0.69 -1.6
169,376 - MPMX26_00157 0.69 +0.2
169,376 - MPMX26_00157 0.69 +0.5
169,376 - MPMX26_00157 0.69 -0.1
169,383 - MPMX26_00157 0.70 +0.4
169,393 - MPMX26_00157 0.71 -0.6
169,393 - MPMX26_00157 0.71 -1.2
169,393 - MPMX26_00157 0.71 -0.5
169,445 - MPMX26_00157 0.74 -0.6
169,455 - MPMX26_00157 0.75 -0.2
169,584 - MPMX26_00157 0.84 -0.1
169,608 + MPMX26_00157 0.86 -0.2
169,608 - MPMX26_00157 0.86 +0.8
169,610 + MPMX26_00157 0.86 -1.1
169,613 - MPMX26_00157 0.86 +0.8
169,618 - MPMX26_00157 0.86 +0.7
169,623 - MPMX26_00157 0.87 -0.9
169,623 - MPMX26_00157 0.87 +0.5
169,625 - MPMX26_00157 0.87 -0.4
169,625 - MPMX26_00157 0.87 -0.3
169,625 - MPMX26_00157 0.87 +0.2
169,627 + MPMX26_00157 0.87 +0.2
169,628 - MPMX26_00157 0.87 -0.9
169,635 - MPMX26_00157 0.87 +0.2
169,635 - MPMX26_00157 0.87 +0.5
169,635 - MPMX26_00157 0.87 -0.9
169,635 - MPMX26_00157 0.87 +2.2
169,635 - MPMX26_00157 0.87 -0.3
169,635 - MPMX26_00157 0.87 +0.1
169,635 - MPMX26_00157 0.87 +0.4
169,635 - MPMX26_00157 0.87 +0.7
169,635 - MPMX26_00157 0.87 -0.8
169,635 - MPMX26_00157 0.87 -0.1
169,669 + MPMX26_00157 0.90 +0.5
169,669 + MPMX26_00157 0.90 +0.4
169,677 - -0.8
169,677 - -0.2
169,677 - -0.2
169,677 - +0.1
169,677 - -1.0
169,677 - -1.3
169,677 - -0.2
169,679 + +0.9
169,679 + -1.6
169,679 + -0.3
169,687 - +0.4
169,687 - -0.8
169,698 - +1.2
169,698 - -0.9
169,704 - -0.3
169,721 - -0.6
169,731 - -0.5
169,731 - +0.5
169,731 - -1.4
169,741 - +2.8
169,741 - -1.2
169,753 + +1.0
169,761 + -1.2
169,769 - -0.1
169,769 - -0.0
169,779 + +0.0
169,779 + +1.8
169,784 + +1.0
169,784 + +0.9
169,787 - -0.7
169,789 + +0.0
169,797 - +0.5
169,889 + -0.2
169,927 + -0.0

Or see this region's nucleotide sequence