Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00134

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00133 and MPMX26_00134 are separated by 43 nucleotidesMPMX26_00134 and MPMX26_00135 are separated by 84 nucleotidesMPMX26_00135 and MPMX26_00136 overlap by 4 nucleotides MPMX26_00133: MPMX26_00133 - hypothetical protein, at 144,704 to 145,672 _00133 MPMX26_00134: MPMX26_00134 - Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase, at 145,716 to 146,339 _00134 MPMX26_00135: MPMX26_00135 - hypothetical protein, at 146,424 to 146,672 _00135 MPMX26_00136: MPMX26_00136 - hypothetical protein, at 146,669 to 148,270 _00136 Position (kb) 145 146 147Strain fitness (log2 ratio) -2 -1 0 1 2 3at 144.731 kb on + strandat 144.733 kb on + strandat 144.733 kb on + strandat 144.736 kb on + strandat 144.738 kb on + strandat 144.772 kb on + strandat 144.780 kb on + strandat 144.780 kb on + strandat 144.804 kb on + strand, within MPMX26_00133at 144.819 kb on + strand, within MPMX26_00133at 144.819 kb on + strand, within MPMX26_00133at 144.819 kb on + strand, within MPMX26_00133at 144.819 kb on + strand, within MPMX26_00133at 144.824 kb on + strand, within MPMX26_00133at 144.824 kb on + strand, within MPMX26_00133at 144.824 kb on + strand, within MPMX26_00133at 144.824 kb on + strand, within MPMX26_00133at 144.824 kb on + strand, within MPMX26_00133at 144.824 kb on + strand, within MPMX26_00133at 144.824 kb on + strand, within MPMX26_00133at 144.824 kb on + strand, within MPMX26_00133at 144.831 kb on + strand, within MPMX26_00133at 144.832 kb on - strand, within MPMX26_00133at 144.860 kb on + strand, within MPMX26_00133at 144.882 kb on + strand, within MPMX26_00133at 144.921 kb on - strand, within MPMX26_00133at 144.952 kb on + strand, within MPMX26_00133at 144.999 kb on + strand, within MPMX26_00133at 145.001 kb on + strand, within MPMX26_00133at 145.001 kb on + strand, within MPMX26_00133at 145.011 kb on + strand, within MPMX26_00133at 145.011 kb on + strand, within MPMX26_00133at 145.011 kb on + strand, within MPMX26_00133at 145.011 kb on + strand, within MPMX26_00133at 145.050 kb on + strand, within MPMX26_00133at 145.056 kb on + strand, within MPMX26_00133at 145.056 kb on + strand, within MPMX26_00133at 145.056 kb on + strand, within MPMX26_00133at 145.081 kb on + strand, within MPMX26_00133at 145.081 kb on + strand, within MPMX26_00133at 145.081 kb on + strand, within MPMX26_00133at 145.081 kb on + strand, within MPMX26_00133at 145.081 kb on + strand, within MPMX26_00133at 145.083 kb on + strand, within MPMX26_00133at 145.083 kb on + strand, within MPMX26_00133at 145.083 kb on + strand, within MPMX26_00133at 145.095 kb on + strand, within MPMX26_00133at 145.119 kb on + strand, within MPMX26_00133at 145.149 kb on + strand, within MPMX26_00133at 145.157 kb on - strand, within MPMX26_00133at 145.165 kb on + strand, within MPMX26_00133at 145.193 kb on + strand, within MPMX26_00133at 145.206 kb on - strand, within MPMX26_00133at 145.275 kb on + strand, within MPMX26_00133at 145.368 kb on + strand, within MPMX26_00133at 145.386 kb on - strand, within MPMX26_00133at 145.440 kb on + strand, within MPMX26_00133at 145.469 kb on + strand, within MPMX26_00133at 145.479 kb on + strand, within MPMX26_00133at 145.479 kb on + strand, within MPMX26_00133at 145.479 kb on + strand, within MPMX26_00133at 145.502 kb on + strand, within MPMX26_00133at 145.540 kb on + strand, within MPMX26_00133at 145.563 kb on + strand, within MPMX26_00133at 145.568 kb on + strand, within MPMX26_00133at 145.600 kb on + strandat 145.600 kb on + strandat 145.609 kb on + strandat 145.609 kb on + strandat 145.610 kb on + strandat 145.624 kb on + strandat 145.632 kb on + strandat 145.634 kb on + strandat 145.726 kb on - strandat 145.738 kb on - strandat 145.738 kb on - strandat 145.738 kb on - strandat 145.738 kb on - strandat 145.738 kb on - strandat 145.743 kb on - strandat 145.746 kb on - strandat 145.748 kb on - strandat 145.776 kb on - strandat 145.776 kb on - strandat 145.776 kb on - strandat 145.776 kb on - strandat 145.776 kb on - strandat 145.776 kb on - strandat 145.776 kb on - strandat 145.776 kb on - strandat 145.785 kb on - strand, within MPMX26_00134at 145.795 kb on - strand, within MPMX26_00134at 145.811 kb on - strand, within MPMX26_00134at 145.811 kb on - strand, within MPMX26_00134at 145.811 kb on - strand, within MPMX26_00134at 145.811 kb on - strand, within MPMX26_00134at 145.811 kb on - strand, within MPMX26_00134at 145.822 kb on - strand, within MPMX26_00134at 145.832 kb on - strand, within MPMX26_00134at 145.832 kb on - strand, within MPMX26_00134at 145.842 kb on - strand, within MPMX26_00134at 145.859 kb on - strand, within MPMX26_00134at 145.924 kb on - strand, within MPMX26_00134at 145.940 kb on - strand, within MPMX26_00134at 145.943 kb on + strand, within MPMX26_00134at 145.951 kb on - strand, within MPMX26_00134at 145.968 kb on - strand, within MPMX26_00134at 145.971 kb on - strand, within MPMX26_00134at 145.999 kb on - strand, within MPMX26_00134at 146.037 kb on - strand, within MPMX26_00134at 146.042 kb on - strand, within MPMX26_00134at 146.042 kb on - strand, within MPMX26_00134at 146.042 kb on - strand, within MPMX26_00134at 146.052 kb on - strand, within MPMX26_00134at 146.141 kb on - strand, within MPMX26_00134at 146.145 kb on - strand, within MPMX26_00134at 146.155 kb on - strand, within MPMX26_00134at 146.171 kb on - strand, within MPMX26_00134at 146.171 kb on - strand, within MPMX26_00134at 146.197 kb on - strand, within MPMX26_00134at 146.267 kb on - strand, within MPMX26_00134at 146.277 kb on - strandat 146.282 kb on - strandat 146.287 kb on - strandat 146.299 kb on - strandat 146.304 kb on - strandat 146.304 kb on - strandat 146.543 kb on + strand, within MPMX26_00135at 146.553 kb on + strand, within MPMX26_00135at 146.685 kb on + strandat 146.686 kb on + strandat 146.703 kb on + strandat 146.708 kb on + strandat 146.708 kb on + strandat 146.712 kb on + strandat 146.743 kb on + strandat 146.800 kb on + strandat 146.800 kb on + strandat 146.800 kb on + strandat 146.822 kb on + strandat 146.827 kb on + strandat 146.827 kb on + strandat 146.827 kb on + strandat 146.883 kb on + strand, within MPMX26_00136at 146.883 kb on + strand, within MPMX26_00136at 146.947 kb on - strand, within MPMX26_00136at 146.960 kb on + strand, within MPMX26_00136at 146.960 kb on + strand, within MPMX26_00136at 146.960 kb on + strand, within MPMX26_00136at 146.979 kb on + strand, within MPMX26_00136at 146.979 kb on + strand, within MPMX26_00136at 146.979 kb on + strand, within MPMX26_00136at 146.979 kb on + strand, within MPMX26_00136at 146.979 kb on + strand, within MPMX26_00136at 146.998 kb on + strand, within MPMX26_00136at 147.009 kb on + strand, within MPMX26_00136at 147.069 kb on + strand, within MPMX26_00136at 147.071 kb on + strand, within MPMX26_00136at 147.071 kb on + strand, within MPMX26_00136at 147.076 kb on + strand, within MPMX26_00136at 147.106 kb on + strand, within MPMX26_00136at 147.113 kb on + strand, within MPMX26_00136at 147.125 kb on + strand, within MPMX26_00136at 147.145 kb on + strand, within MPMX26_00136at 147.149 kb on + strand, within MPMX26_00136at 147.157 kb on + strand, within MPMX26_00136at 147.229 kb on + strand, within MPMX26_00136at 147.238 kb on + strand, within MPMX26_00136at 147.240 kb on + strand, within MPMX26_00136at 147.278 kb on + strand, within MPMX26_00136

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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144,731 + -0.8
144,733 + +0.4
144,733 + +2.2
144,736 + +0.5
144,738 + +0.2
144,772 + -0.9
144,780 + +0.0
144,780 + +0.5
144,804 + MPMX26_00133 0.10 -0.2
144,819 + MPMX26_00133 0.12 +0.2
144,819 + MPMX26_00133 0.12 -0.2
144,819 + MPMX26_00133 0.12 +0.0
144,819 + MPMX26_00133 0.12 +0.9
144,824 + MPMX26_00133 0.12 +0.1
144,824 + MPMX26_00133 0.12 +1.6
144,824 + MPMX26_00133 0.12 -0.8
144,824 + MPMX26_00133 0.12 -0.5
144,824 + MPMX26_00133 0.12 +0.3
144,824 + MPMX26_00133 0.12 -0.9
144,824 + MPMX26_00133 0.12 -0.2
144,824 + MPMX26_00133 0.12 +0.2
144,831 + MPMX26_00133 0.13 +1.2
144,832 - MPMX26_00133 0.13 +2.2
144,860 + MPMX26_00133 0.16 -0.1
144,882 + MPMX26_00133 0.18 +0.8
144,921 - MPMX26_00133 0.22 +1.2
144,952 + MPMX26_00133 0.26 -1.1
144,999 + MPMX26_00133 0.30 -1.2
145,001 + MPMX26_00133 0.31 -0.3
145,001 + MPMX26_00133 0.31 +1.6
145,011 + MPMX26_00133 0.32 +0.1
145,011 + MPMX26_00133 0.32 +0.4
145,011 + MPMX26_00133 0.32 -0.0
145,011 + MPMX26_00133 0.32 +0.2
145,050 + MPMX26_00133 0.36 +0.5
145,056 + MPMX26_00133 0.36 -0.3
145,056 + MPMX26_00133 0.36 -2.7
145,056 + MPMX26_00133 0.36 +0.3
145,081 + MPMX26_00133 0.39 -0.5
145,081 + MPMX26_00133 0.39 +0.5
145,081 + MPMX26_00133 0.39 +1.0
145,081 + MPMX26_00133 0.39 +0.7
145,081 + MPMX26_00133 0.39 +0.2
145,083 + MPMX26_00133 0.39 -1.1
145,083 + MPMX26_00133 0.39 -0.2
145,083 + MPMX26_00133 0.39 +0.1
145,095 + MPMX26_00133 0.40 -0.5
145,119 + MPMX26_00133 0.43 +0.6
145,149 + MPMX26_00133 0.46 +1.7
145,157 - MPMX26_00133 0.47 +0.5
145,165 + MPMX26_00133 0.48 +0.3
145,193 + MPMX26_00133 0.50 -2.0
145,206 - MPMX26_00133 0.52 +0.5
145,275 + MPMX26_00133 0.59 +1.8
145,368 + MPMX26_00133 0.69 -1.1
145,386 - MPMX26_00133 0.70 -0.0
145,440 + MPMX26_00133 0.76 -1.2
145,469 + MPMX26_00133 0.79 +0.0
145,479 + MPMX26_00133 0.80 -0.1
145,479 + MPMX26_00133 0.80 +0.9
145,479 + MPMX26_00133 0.80 +0.2
145,502 + MPMX26_00133 0.82 +0.0
145,540 + MPMX26_00133 0.86 +0.3
145,563 + MPMX26_00133 0.89 -1.0
145,568 + MPMX26_00133 0.89 +1.5
145,600 + +0.0
145,600 + +0.1
145,609 + -0.7
145,609 + -0.9
145,610 + +0.9
145,624 + -1.2
145,632 + -0.0
145,634 + +0.2
145,726 - +0.3
145,738 - -1.0
145,738 - -2.5
145,738 - +0.6
145,738 - -0.5
145,738 - +0.1
145,743 - +0.1
145,746 - -0.0
145,748 - -0.8
145,776 - +0.4
145,776 - -0.4
145,776 - -1.5
145,776 - +0.6
145,776 - +0.6
145,776 - +0.3
145,776 - -0.1
145,776 - +0.2
145,785 - MPMX26_00134 0.11 +0.2
145,795 - MPMX26_00134 0.13 +0.5
145,811 - MPMX26_00134 0.15 +0.3
145,811 - MPMX26_00134 0.15 -0.6
145,811 - MPMX26_00134 0.15 +0.0
145,811 - MPMX26_00134 0.15 +0.0
145,811 - MPMX26_00134 0.15 -0.8
145,822 - MPMX26_00134 0.17 -1.7
145,832 - MPMX26_00134 0.19 +0.4
145,832 - MPMX26_00134 0.19 -1.0
145,842 - MPMX26_00134 0.20 -0.7
145,859 - MPMX26_00134 0.23 -0.1
145,924 - MPMX26_00134 0.33 +0.0
145,940 - MPMX26_00134 0.36 -0.7
145,943 + MPMX26_00134 0.36 -0.4
145,951 - MPMX26_00134 0.38 -0.4
145,968 - MPMX26_00134 0.40 -0.2
145,971 - MPMX26_00134 0.41 +0.5
145,999 - MPMX26_00134 0.45 +3.4
146,037 - MPMX26_00134 0.51 -2.1
146,042 - MPMX26_00134 0.52 +0.6
146,042 - MPMX26_00134 0.52 -0.4
146,042 - MPMX26_00134 0.52 -0.1
146,052 - MPMX26_00134 0.54 +0.0
146,141 - MPMX26_00134 0.68 -0.3
146,145 - MPMX26_00134 0.69 -1.4
146,155 - MPMX26_00134 0.70 -0.3
146,171 - MPMX26_00134 0.73 -0.4
146,171 - MPMX26_00134 0.73 +1.2
146,197 - MPMX26_00134 0.77 -0.2
146,267 - MPMX26_00134 0.88 +0.1
146,277 - +0.1
146,282 - -0.7
146,287 - +0.7
146,299 - -0.6
146,304 - +0.5
146,304 - -0.7
146,543 + MPMX26_00135 0.48 -0.5
146,553 + MPMX26_00135 0.52 +0.8
146,685 + +0.2
146,686 + -0.3
146,703 + +0.5
146,708 + -0.4
146,708 + +0.1
146,712 + +0.1
146,743 + +1.0
146,800 + -0.3
146,800 + +0.4
146,800 + +0.6
146,822 + -0.3
146,827 + -0.4
146,827 + +0.1
146,827 + -0.1
146,883 + MPMX26_00136 0.13 +0.9
146,883 + MPMX26_00136 0.13 +0.2
146,947 - MPMX26_00136 0.17 +1.0
146,960 + MPMX26_00136 0.18 -0.1
146,960 + MPMX26_00136 0.18 -0.2
146,960 + MPMX26_00136 0.18 +0.5
146,979 + MPMX26_00136 0.19 +0.4
146,979 + MPMX26_00136 0.19 -0.0
146,979 + MPMX26_00136 0.19 -0.0
146,979 + MPMX26_00136 0.19 +1.2
146,979 + MPMX26_00136 0.19 +0.1
146,998 + MPMX26_00136 0.21 -0.1
147,009 + MPMX26_00136 0.21 +0.4
147,069 + MPMX26_00136 0.25 -1.0
147,071 + MPMX26_00136 0.25 -0.1
147,071 + MPMX26_00136 0.25 -0.5
147,076 + MPMX26_00136 0.25 +0.7
147,106 + MPMX26_00136 0.27 +0.5
147,113 + MPMX26_00136 0.28 +0.5
147,125 + MPMX26_00136 0.28 -0.4
147,145 + MPMX26_00136 0.30 -0.2
147,149 + MPMX26_00136 0.30 +0.5
147,157 + MPMX26_00136 0.30 +0.1
147,229 + MPMX26_00136 0.35 +0.6
147,238 + MPMX26_00136 0.36 +0.6
147,240 + MPMX26_00136 0.36 +1.1
147,278 + MPMX26_00136 0.38 -0.6

Or see this region's nucleotide sequence