Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02220

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02219 and MPMX26_02220 are separated by 446 nucleotidesMPMX26_02220 and MPMX26_02221 are separated by 18 nucleotides MPMX26_02219: MPMX26_02219 - Phosphoserine aminotransferase, at 2,275,109 to 2,276,188 _02219 MPMX26_02220: MPMX26_02220 - hypothetical protein, at 2,276,635 to 2,278,143 _02220 MPMX26_02221: MPMX26_02221 - Colistin resistance protein EmrA, at 2,278,162 to 2,279,292 _02221 Position (kb) 2276 2277 2278 2279Strain fitness (log2 ratio) -1 0 1 2at 2276.102 kb on - strandat 2276.673 kb on + strandat 2276.776 kb on + strandat 2276.776 kb on + strandat 2276.821 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.863 kb on + strand, within MPMX26_02220at 2276.898 kb on + strand, within MPMX26_02220at 2276.898 kb on + strand, within MPMX26_02220at 2276.973 kb on + strand, within MPMX26_02220at 2276.977 kb on + strand, within MPMX26_02220at 2277.013 kb on + strand, within MPMX26_02220at 2277.042 kb on + strand, within MPMX26_02220at 2277.115 kb on + strand, within MPMX26_02220at 2277.167 kb on + strand, within MPMX26_02220at 2277.388 kb on + strand, within MPMX26_02220at 2277.502 kb on + strand, within MPMX26_02220at 2277.502 kb on + strand, within MPMX26_02220at 2277.595 kb on + strand, within MPMX26_02220at 2277.616 kb on + strand, within MPMX26_02220at 2277.646 kb on + strand, within MPMX26_02220at 2277.685 kb on + strand, within MPMX26_02220at 2277.685 kb on + strand, within MPMX26_02220at 2277.795 kb on + strand, within MPMX26_02220at 2277.852 kb on + strand, within MPMX26_02220at 2277.994 kb on + strandat 2278.071 kb on + strandat 2278.071 kb on + strandat 2278.582 kb on + strand, within MPMX26_02221at 2278.752 kb on + strand, within MPMX26_02221at 2278.752 kb on + strand, within MPMX26_02221at 2278.762 kb on + strand, within MPMX26_02221at 2278.863 kb on + strand, within MPMX26_02221at 2278.947 kb on + strand, within MPMX26_02221at 2279.050 kb on + strand, within MPMX26_02221

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,276,102 - -1.0
2,276,673 + -0.7
2,276,776 + +0.4
2,276,776 + -0.5
2,276,821 + MPMX26_02220 0.12 +0.4
2,276,863 + MPMX26_02220 0.15 -0.1
2,276,863 + MPMX26_02220 0.15 +0.6
2,276,863 + MPMX26_02220 0.15 +0.8
2,276,863 + MPMX26_02220 0.15 +0.4
2,276,863 + MPMX26_02220 0.15 +0.1
2,276,863 + MPMX26_02220 0.15 -0.4
2,276,863 + MPMX26_02220 0.15 -0.2
2,276,863 + MPMX26_02220 0.15 -0.3
2,276,863 + MPMX26_02220 0.15 +2.2
2,276,863 + MPMX26_02220 0.15 -0.7
2,276,898 + MPMX26_02220 0.17 +0.6
2,276,898 + MPMX26_02220 0.17 +2.0
2,276,973 + MPMX26_02220 0.22 -0.7
2,276,977 + MPMX26_02220 0.23 +2.6
2,277,013 + MPMX26_02220 0.25 +0.7
2,277,042 + MPMX26_02220 0.27 +0.1
2,277,115 + MPMX26_02220 0.32 +0.3
2,277,167 + MPMX26_02220 0.35 +0.5
2,277,388 + MPMX26_02220 0.50 -0.2
2,277,502 + MPMX26_02220 0.57 +1.9
2,277,502 + MPMX26_02220 0.57 +0.8
2,277,595 + MPMX26_02220 0.64 +0.3
2,277,616 + MPMX26_02220 0.65 +1.7
2,277,646 + MPMX26_02220 0.67 -0.1
2,277,685 + MPMX26_02220 0.70 +0.6
2,277,685 + MPMX26_02220 0.70 +0.6
2,277,795 + MPMX26_02220 0.77 -0.2
2,277,852 + MPMX26_02220 0.81 -1.3
2,277,994 + +0.6
2,278,071 + +1.0
2,278,071 + +1.6
2,278,582 + MPMX26_02221 0.37 +0.6
2,278,752 + MPMX26_02221 0.52 +1.6
2,278,752 + MPMX26_02221 0.52 +2.6
2,278,762 + MPMX26_02221 0.53 +1.0
2,278,863 + MPMX26_02221 0.62 -0.1
2,278,947 + MPMX26_02221 0.69 +0.3
2,279,050 + MPMX26_02221 0.79 -0.0

Or see this region's nucleotide sequence