Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02172

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02171 and MPMX26_02172 are separated by 87 nucleotidesMPMX26_02172 and MPMX26_02173 are separated by 292 nucleotides MPMX26_02171: MPMX26_02171 - HTH-type transcriptional regulator SsuR, at 2,226,366 to 2,227,289 _02171 MPMX26_02172: MPMX26_02172 - hypothetical protein, at 2,227,377 to 2,228,105 _02172 MPMX26_02173: MPMX26_02173 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,228,398 to 2,229,219 _02173 Position (kb) 2227 2228 2229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2226.443 kb on + strandat 2226.443 kb on + strandat 2226.443 kb on + strandat 2226.443 kb on + strandat 2226.443 kb on + strandat 2226.443 kb on + strandat 2226.459 kb on + strand, within MPMX26_02171at 2226.521 kb on + strand, within MPMX26_02171at 2226.522 kb on + strand, within MPMX26_02171at 2226.561 kb on + strand, within MPMX26_02171at 2226.633 kb on + strand, within MPMX26_02171at 2226.663 kb on + strand, within MPMX26_02171at 2226.684 kb on + strand, within MPMX26_02171at 2226.846 kb on + strand, within MPMX26_02171at 2226.851 kb on + strand, within MPMX26_02171at 2226.887 kb on + strand, within MPMX26_02171at 2226.887 kb on + strand, within MPMX26_02171at 2226.894 kb on + strand, within MPMX26_02171at 2227.068 kb on + strand, within MPMX26_02171at 2227.080 kb on + strand, within MPMX26_02171at 2227.119 kb on + strand, within MPMX26_02171at 2227.139 kb on + strand, within MPMX26_02171at 2227.206 kb on + strandat 2227.483 kb on - strand, within MPMX26_02172at 2227.484 kb on - strand, within MPMX26_02172at 2227.488 kb on - strand, within MPMX26_02172at 2227.488 kb on - strand, within MPMX26_02172at 2227.488 kb on - strand, within MPMX26_02172at 2227.488 kb on - strand, within MPMX26_02172at 2227.495 kb on - strand, within MPMX26_02172at 2227.495 kb on - strand, within MPMX26_02172at 2227.495 kb on - strand, within MPMX26_02172at 2227.495 kb on - strand, within MPMX26_02172at 2227.495 kb on - strand, within MPMX26_02172at 2227.495 kb on - strand, within MPMX26_02172at 2227.498 kb on - strand, within MPMX26_02172at 2227.498 kb on - strand, within MPMX26_02172at 2227.534 kb on - strand, within MPMX26_02172at 2227.578 kb on - strand, within MPMX26_02172at 2227.596 kb on - strand, within MPMX26_02172at 2227.596 kb on - strand, within MPMX26_02172at 2227.614 kb on - strand, within MPMX26_02172at 2227.653 kb on - strand, within MPMX26_02172at 2227.653 kb on - strand, within MPMX26_02172at 2227.668 kb on - strand, within MPMX26_02172at 2227.709 kb on - strand, within MPMX26_02172at 2227.709 kb on - strand, within MPMX26_02172at 2227.722 kb on - strand, within MPMX26_02172at 2227.760 kb on - strand, within MPMX26_02172at 2227.760 kb on - strand, within MPMX26_02172at 2227.773 kb on - strand, within MPMX26_02172at 2227.776 kb on - strand, within MPMX26_02172at 2227.809 kb on - strand, within MPMX26_02172at 2227.844 kb on - strand, within MPMX26_02172at 2227.844 kb on - strand, within MPMX26_02172at 2227.868 kb on - strand, within MPMX26_02172at 2227.878 kb on - strand, within MPMX26_02172at 2227.952 kb on - strand, within MPMX26_02172at 2227.952 kb on - strand, within MPMX26_02172at 2227.952 kb on - strand, within MPMX26_02172at 2227.972 kb on - strand, within MPMX26_02172at 2227.982 kb on - strand, within MPMX26_02172at 2227.984 kb on - strand, within MPMX26_02172at 2228.018 kb on - strand, within MPMX26_02172at 2228.065 kb on - strandat 2228.073 kb on - strandat 2228.115 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,226,443 + +0.8
2,226,443 + -0.0
2,226,443 + -0.2
2,226,443 + +1.0
2,226,443 + +0.3
2,226,443 + +1.8
2,226,459 + MPMX26_02171 0.10 +1.4
2,226,521 + MPMX26_02171 0.17 -2.0
2,226,522 + MPMX26_02171 0.17 -0.2
2,226,561 + MPMX26_02171 0.21 -0.8
2,226,633 + MPMX26_02171 0.29 +0.2
2,226,663 + MPMX26_02171 0.32 +0.1
2,226,684 + MPMX26_02171 0.34 -0.0
2,226,846 + MPMX26_02171 0.52 -0.1
2,226,851 + MPMX26_02171 0.52 -0.6
2,226,887 + MPMX26_02171 0.56 +0.1
2,226,887 + MPMX26_02171 0.56 -0.9
2,226,894 + MPMX26_02171 0.57 -0.9
2,227,068 + MPMX26_02171 0.76 +0.1
2,227,080 + MPMX26_02171 0.77 +1.6
2,227,119 + MPMX26_02171 0.81 +0.5
2,227,139 + MPMX26_02171 0.84 +2.0
2,227,206 + +0.4
2,227,483 - MPMX26_02172 0.15 -1.6
2,227,484 - MPMX26_02172 0.15 -2.5
2,227,488 - MPMX26_02172 0.15 -3.4
2,227,488 - MPMX26_02172 0.15 -1.9
2,227,488 - MPMX26_02172 0.15 -0.3
2,227,488 - MPMX26_02172 0.15 -2.5
2,227,495 - MPMX26_02172 0.16 +0.1
2,227,495 - MPMX26_02172 0.16 -0.4
2,227,495 - MPMX26_02172 0.16 -0.4
2,227,495 - MPMX26_02172 0.16 -0.3
2,227,495 - MPMX26_02172 0.16 -1.5
2,227,495 - MPMX26_02172 0.16 -1.0
2,227,498 - MPMX26_02172 0.17 -1.0
2,227,498 - MPMX26_02172 0.17 -2.7
2,227,534 - MPMX26_02172 0.22 -1.4
2,227,578 - MPMX26_02172 0.28 +0.6
2,227,596 - MPMX26_02172 0.30 -2.4
2,227,596 - MPMX26_02172 0.30 -2.0
2,227,614 - MPMX26_02172 0.33 -1.2
2,227,653 - MPMX26_02172 0.38 -0.7
2,227,653 - MPMX26_02172 0.38 -1.5
2,227,668 - MPMX26_02172 0.40 -1.5
2,227,709 - MPMX26_02172 0.46 -1.3
2,227,709 - MPMX26_02172 0.46 -1.7
2,227,722 - MPMX26_02172 0.47 -1.1
2,227,760 - MPMX26_02172 0.53 -2.0
2,227,760 - MPMX26_02172 0.53 -2.7
2,227,773 - MPMX26_02172 0.54 -3.2
2,227,776 - MPMX26_02172 0.55 -3.3
2,227,809 - MPMX26_02172 0.59 -0.6
2,227,844 - MPMX26_02172 0.64 -2.0
2,227,844 - MPMX26_02172 0.64 -3.0
2,227,868 - MPMX26_02172 0.67 -2.9
2,227,878 - MPMX26_02172 0.69 -1.8
2,227,952 - MPMX26_02172 0.79 -1.3
2,227,952 - MPMX26_02172 0.79 -0.6
2,227,952 - MPMX26_02172 0.79 -1.5
2,227,972 - MPMX26_02172 0.82 -0.4
2,227,982 - MPMX26_02172 0.83 -0.4
2,227,984 - MPMX26_02172 0.83 -0.7
2,228,018 - MPMX26_02172 0.88 -1.3
2,228,065 - -0.5
2,228,073 - -0.5
2,228,115 + +0.6

Or see this region's nucleotide sequence