Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00877

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00876 and MPMX26_00877 are separated by 864 nucleotidesMPMX26_00877 and MPMX26_00878 are separated by 312 nucleotidesMPMX26_00878 and MPMX26_00879 overlap by 1 nucleotides MPMX26_00876: MPMX26_00876 - ISNCY family transposase ISAjo2, at 922,229 to 923,566 _00876 MPMX26_00877: MPMX26_00877 - hypothetical protein, at 924,431 to 924,712 _00877 MPMX26_00878: MPMX26_00878 - IS3 family transposase ISAba18, at 925,025 to 925,342 _00878 MPMX26_00879: MPMX26_00879 - IS3 family transposase ISAba2, at 925,342 to 925,950 _00879 Position (kb) 924 925Strain fitness (log2 ratio) -1 0 1at 924.497 kb on + strand, within MPMX26_00877at 925.141 kb on + strand, within MPMX26_00878at 925.288 kb on + strand, within MPMX26_00878at 925.315 kb on + strandat 925.315 kb on + strandat 925.319 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
924,497 + MPMX26_00877 0.23 -0.7
925,141 + MPMX26_00878 0.36 -0.2
925,288 + MPMX26_00878 0.83 -0.9
925,315 + +0.6
925,315 + -0.4
925,319 + +0.5

Or see this region's nucleotide sequence