Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00422

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00421 and MPMX26_00422 are separated by 146 nucleotidesMPMX26_00422 and MPMX26_00423 are separated by 28 nucleotidesMPMX26_00423 and MPMX26_00424 are separated by 87 nucleotidesMPMX26_00424 and MPMX26_00425 are separated by 114 nucleotides MPMX26_00421: MPMX26_00421 - Tail-specific protease, at 452,300 to 454,489 _00421 MPMX26_00422: MPMX26_00422 - GDP-mannose-dependent alpha-mannosyltransferase, at 454,636 to 455,913 _00422 MPMX26_00423: MPMX26_00423 - hypothetical protein, at 455,942 to 456,493 _00423 MPMX26_00424: MPMX26_00424 - Protein IscX, at 456,581 to 456,781 _00424 MPMX26_00425: MPMX26_00425 - Nucleoside diphosphate kinase, at 456,896 to 457,327 _00425 Position (kb) 454 455 456Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 453.673 kb on + strand, within MPMX26_00421at 453.673 kb on + strand, within MPMX26_00421at 453.693 kb on + strand, within MPMX26_00421at 453.698 kb on + strand, within MPMX26_00421at 453.701 kb on + strand, within MPMX26_00421at 453.701 kb on + strand, within MPMX26_00421at 453.701 kb on + strand, within MPMX26_00421at 453.701 kb on + strand, within MPMX26_00421at 453.701 kb on + strand, within MPMX26_00421at 453.701 kb on + strand, within MPMX26_00421at 453.721 kb on + strand, within MPMX26_00421at 453.763 kb on + strand, within MPMX26_00421at 453.768 kb on + strand, within MPMX26_00421at 453.799 kb on + strand, within MPMX26_00421at 453.836 kb on + strand, within MPMX26_00421at 453.870 kb on + strand, within MPMX26_00421at 453.881 kb on + strand, within MPMX26_00421at 453.881 kb on + strand, within MPMX26_00421at 453.881 kb on + strand, within MPMX26_00421at 453.881 kb on + strand, within MPMX26_00421at 453.881 kb on + strand, within MPMX26_00421at 453.881 kb on + strand, within MPMX26_00421at 453.881 kb on + strand, within MPMX26_00421at 453.881 kb on + strand, within MPMX26_00421at 453.891 kb on + strand, within MPMX26_00421at 453.893 kb on + strand, within MPMX26_00421at 453.893 kb on + strand, within MPMX26_00421at 453.904 kb on + strand, within MPMX26_00421at 453.927 kb on + strand, within MPMX26_00421at 453.928 kb on + strand, within MPMX26_00421at 453.928 kb on + strand, within MPMX26_00421at 453.928 kb on + strand, within MPMX26_00421at 453.932 kb on + strand, within MPMX26_00421at 453.933 kb on + strand, within MPMX26_00421at 453.933 kb on + strand, within MPMX26_00421at 453.933 kb on + strand, within MPMX26_00421at 453.933 kb on + strand, within MPMX26_00421at 453.933 kb on + strand, within MPMX26_00421at 453.933 kb on + strand, within MPMX26_00421at 453.943 kb on + strand, within MPMX26_00421at 453.943 kb on + strand, within MPMX26_00421at 453.979 kb on + strand, within MPMX26_00421at 453.979 kb on + strand, within MPMX26_00421at 453.979 kb on + strand, within MPMX26_00421at 453.979 kb on + strand, within MPMX26_00421at 453.999 kb on + strand, within MPMX26_00421at 454.027 kb on + strand, within MPMX26_00421at 454.077 kb on + strand, within MPMX26_00421at 454.085 kb on + strand, within MPMX26_00421at 454.085 kb on + strand, within MPMX26_00421at 454.087 kb on + strand, within MPMX26_00421at 454.101 kb on + strand, within MPMX26_00421at 454.101 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.111 kb on + strand, within MPMX26_00421at 454.116 kb on + strand, within MPMX26_00421at 454.116 kb on + strand, within MPMX26_00421at 454.137 kb on + strand, within MPMX26_00421at 454.137 kb on + strand, within MPMX26_00421at 454.176 kb on + strand, within MPMX26_00421at 454.186 kb on + strand, within MPMX26_00421at 454.198 kb on + strand, within MPMX26_00421at 454.234 kb on + strand, within MPMX26_00421at 454.236 kb on + strand, within MPMX26_00421at 454.246 kb on + strand, within MPMX26_00421at 454.246 kb on + strand, within MPMX26_00421at 454.246 kb on + strand, within MPMX26_00421at 454.246 kb on + strand, within MPMX26_00421at 454.246 kb on + strand, within MPMX26_00421at 454.246 kb on + strand, within MPMX26_00421at 454.266 kb on + strand, within MPMX26_00421at 454.274 kb on + strandat 454.351 kb on + strandat 454.364 kb on + strandat 454.387 kb on + strandat 454.387 kb on + strandat 454.387 kb on + strandat 454.395 kb on + strandat 454.397 kb on + strandat 454.397 kb on + strandat 454.397 kb on + strandat 454.409 kb on + strandat 454.409 kb on + strandat 454.409 kb on + strandat 454.421 kb on + strandat 454.428 kb on + strandat 454.484 kb on + strandat 454.497 kb on + strandat 454.598 kb on - strandat 454.636 kb on - strandat 454.636 kb on - strandat 454.824 kb on - strand, within MPMX26_00422at 454.893 kb on - strand, within MPMX26_00422at 454.936 kb on - strand, within MPMX26_00422at 454.956 kb on - strand, within MPMX26_00422at 454.956 kb on - strand, within MPMX26_00422at 454.956 kb on - strand, within MPMX26_00422at 454.956 kb on - strand, within MPMX26_00422at 454.966 kb on - strand, within MPMX26_00422at 454.966 kb on - strand, within MPMX26_00422at 454.966 kb on - strand, within MPMX26_00422at 454.966 kb on - strand, within MPMX26_00422at 454.966 kb on - strand, within MPMX26_00422at 454.996 kb on - strand, within MPMX26_00422at 454.996 kb on - strand, within MPMX26_00422at 454.996 kb on - strand, within MPMX26_00422at 455.024 kb on - strand, within MPMX26_00422at 455.034 kb on - strand, within MPMX26_00422at 455.217 kb on - strand, within MPMX26_00422at 455.885 kb on - strandat 455.895 kb on - strandat 456.160 kb on + strand, within MPMX26_00423at 456.160 kb on + strand, within MPMX26_00423at 456.205 kb on + strand, within MPMX26_00423at 456.329 kb on - strand, within MPMX26_00423at 456.329 kb on - strand, within MPMX26_00423at 456.577 kb on + strandat 456.589 kb on + strandat 456.594 kb on + strandat 456.597 kb on - strandat 456.625 kb on + strand, within MPMX26_00424at 456.625 kb on + strand, within MPMX26_00424at 456.625 kb on + strand, within MPMX26_00424at 456.629 kb on + strand, within MPMX26_00424at 456.637 kb on + strand, within MPMX26_00424at 456.637 kb on + strand, within MPMX26_00424at 456.637 kb on + strand, within MPMX26_00424at 456.637 kb on + strand, within MPMX26_00424at 456.666 kb on + strand, within MPMX26_00424at 456.666 kb on + strand, within MPMX26_00424at 456.666 kb on + strand, within MPMX26_00424at 456.666 kb on + strand, within MPMX26_00424at 456.666 kb on + strand, within MPMX26_00424at 456.666 kb on + strand, within MPMX26_00424at 456.666 kb on + strand, within MPMX26_00424at 456.666 kb on + strand, within MPMX26_00424at 456.674 kb on + strand, within MPMX26_00424at 456.686 kb on + strand, within MPMX26_00424at 456.739 kb on + strand, within MPMX26_00424at 456.749 kb on + strand, within MPMX26_00424at 456.757 kb on + strand, within MPMX26_00424at 456.757 kb on + strand, within MPMX26_00424at 456.762 kb on + strandat 456.813 kb on + strandat 456.813 kb on + strandat 456.823 kb on + strandat 456.849 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
453,673 + MPMX26_00421 0.63 +0.5
453,673 + MPMX26_00421 0.63 -1.6
453,693 + MPMX26_00421 0.64 -1.9
453,698 + MPMX26_00421 0.64 -1.6
453,701 + MPMX26_00421 0.64 -2.9
453,701 + MPMX26_00421 0.64 -1.4
453,701 + MPMX26_00421 0.64 +1.5
453,701 + MPMX26_00421 0.64 -1.0
453,701 + MPMX26_00421 0.64 -1.0
453,701 + MPMX26_00421 0.64 -2.4
453,721 + MPMX26_00421 0.65 -0.9
453,763 + MPMX26_00421 0.67 -2.1
453,768 + MPMX26_00421 0.67 +1.0
453,799 + MPMX26_00421 0.68 -2.2
453,836 + MPMX26_00421 0.70 +1.5
453,870 + MPMX26_00421 0.72 -1.9
453,881 + MPMX26_00421 0.72 +1.5
453,881 + MPMX26_00421 0.72 +2.5
453,881 + MPMX26_00421 0.72 -1.9
453,881 + MPMX26_00421 0.72 -1.8
453,881 + MPMX26_00421 0.72 +0.5
453,881 + MPMX26_00421 0.72 -0.6
453,881 + MPMX26_00421 0.72 -2.4
453,881 + MPMX26_00421 0.72 -2.6
453,891 + MPMX26_00421 0.73 -0.0
453,893 + MPMX26_00421 0.73 -2.5
453,893 + MPMX26_00421 0.73 -2.8
453,904 + MPMX26_00421 0.73 -0.9
453,927 + MPMX26_00421 0.74 -0.0
453,928 + MPMX26_00421 0.74 +0.2
453,928 + MPMX26_00421 0.74 -1.2
453,928 + MPMX26_00421 0.74 -1.4
453,932 + MPMX26_00421 0.75 -0.6
453,933 + MPMX26_00421 0.75 -2.5
453,933 + MPMX26_00421 0.75 -1.0
453,933 + MPMX26_00421 0.75 -0.9
453,933 + MPMX26_00421 0.75 -1.2
453,933 + MPMX26_00421 0.75 +1.0
453,933 + MPMX26_00421 0.75 -0.6
453,943 + MPMX26_00421 0.75 +1.5
453,943 + MPMX26_00421 0.75 +2.5
453,979 + MPMX26_00421 0.77 +1.0
453,979 + MPMX26_00421 0.77 -0.9
453,979 + MPMX26_00421 0.77 -0.9
453,979 + MPMX26_00421 0.77 -1.6
453,999 + MPMX26_00421 0.78 -1.5
454,027 + MPMX26_00421 0.79 -2.5
454,077 + MPMX26_00421 0.81 -0.5
454,085 + MPMX26_00421 0.82 -1.4
454,085 + MPMX26_00421 0.82 -1.6
454,087 + MPMX26_00421 0.82 -1.3
454,101 + MPMX26_00421 0.82 +1.0
454,101 + MPMX26_00421 0.82 -0.5
454,111 + MPMX26_00421 0.83 +0.5
454,111 + MPMX26_00421 0.83 -2.6
454,111 + MPMX26_00421 0.83 -0.5
454,111 + MPMX26_00421 0.83 -0.6
454,111 + MPMX26_00421 0.83 -0.5
454,111 + MPMX26_00421 0.83 -0.0
454,111 + MPMX26_00421 0.83 +2.5
454,111 + MPMX26_00421 0.83 -3.1
454,111 + MPMX26_00421 0.83 -0.6
454,111 + MPMX26_00421 0.83 -0.8
454,111 + MPMX26_00421 0.83 -2.3
454,111 + MPMX26_00421 0.83 -0.9
454,111 + MPMX26_00421 0.83 -0.0
454,111 + MPMX26_00421 0.83 +0.5
454,111 + MPMX26_00421 0.83 -0.8
454,111 + MPMX26_00421 0.83 -2.7
454,111 + MPMX26_00421 0.83 +0.2
454,111 + MPMX26_00421 0.83 -0.8
454,111 + MPMX26_00421 0.83 -2.0
454,116 + MPMX26_00421 0.83 +0.5
454,116 + MPMX26_00421 0.83 +1.0
454,137 + MPMX26_00421 0.84 +2.5
454,137 + MPMX26_00421 0.84 +0.5
454,176 + MPMX26_00421 0.86 +0.2
454,186 + MPMX26_00421 0.86 -0.3
454,198 + MPMX26_00421 0.87 -1.6
454,234 + MPMX26_00421 0.88 +1.0
454,236 + MPMX26_00421 0.88 -0.5
454,246 + MPMX26_00421 0.89 -2.1
454,246 + MPMX26_00421 0.89 -2.0
454,246 + MPMX26_00421 0.89 -2.6
454,246 + MPMX26_00421 0.89 -0.8
454,246 + MPMX26_00421 0.89 -1.6
454,246 + MPMX26_00421 0.89 -2.0
454,266 + MPMX26_00421 0.90 -1.3
454,274 + +0.5
454,351 + -1.6
454,364 + +1.0
454,387 + -0.3
454,387 + +0.5
454,387 + +1.0
454,395 + +0.2
454,397 + -0.6
454,397 + -2.1
454,397 + +2.5
454,409 + -4.0
454,409 + -1.6
454,409 + -0.3
454,421 + -2.2
454,428 + +1.5
454,484 + -1.6
454,497 + +0.5
454,598 - +1.5
454,636 - -0.0
454,636 - +0.1
454,824 - MPMX26_00422 0.15 -1.3
454,893 - MPMX26_00422 0.20 +1.0
454,936 - MPMX26_00422 0.23 -1.2
454,956 - MPMX26_00422 0.25 +2.0
454,956 - MPMX26_00422 0.25 +0.2
454,956 - MPMX26_00422 0.25 -0.3
454,956 - MPMX26_00422 0.25 +1.0
454,966 - MPMX26_00422 0.26 +0.2
454,966 - MPMX26_00422 0.26 -1.6
454,966 - MPMX26_00422 0.26 +0.3
454,966 - MPMX26_00422 0.26 +0.5
454,966 - MPMX26_00422 0.26 +1.0
454,996 - MPMX26_00422 0.28 -0.0
454,996 - MPMX26_00422 0.28 -0.1
454,996 - MPMX26_00422 0.28 +1.5
455,024 - MPMX26_00422 0.30 -0.0
455,034 - MPMX26_00422 0.31 +1.0
455,217 - MPMX26_00422 0.45 +1.0
455,885 - +0.2
455,895 - +1.0
456,160 + MPMX26_00423 0.39 -0.0
456,160 + MPMX26_00423 0.39 +1.5
456,205 + MPMX26_00423 0.48 +2.5
456,329 - MPMX26_00423 0.70 +1.5
456,329 - MPMX26_00423 0.70 +2.5
456,577 + -0.7
456,589 + +0.0
456,594 + -1.6
456,597 - +1.5
456,625 + MPMX26_00424 0.22 -0.3
456,625 + MPMX26_00424 0.22 -0.2
456,625 + MPMX26_00424 0.22 -0.7
456,629 + MPMX26_00424 0.24 -0.2
456,637 + MPMX26_00424 0.28 +0.1
456,637 + MPMX26_00424 0.28 -0.2
456,637 + MPMX26_00424 0.28 +0.2
456,637 + MPMX26_00424 0.28 -0.6
456,666 + MPMX26_00424 0.42 -0.2
456,666 + MPMX26_00424 0.42 -1.1
456,666 + MPMX26_00424 0.42 -0.8
456,666 + MPMX26_00424 0.42 -0.7
456,666 + MPMX26_00424 0.42 -0.4
456,666 + MPMX26_00424 0.42 -1.0
456,666 + MPMX26_00424 0.42 -0.6
456,666 + MPMX26_00424 0.42 -0.4
456,674 + MPMX26_00424 0.46 -1.4
456,686 + MPMX26_00424 0.52 -0.7
456,739 + MPMX26_00424 0.79 -0.3
456,749 + MPMX26_00424 0.84 +0.2
456,757 + MPMX26_00424 0.88 -0.5
456,757 + MPMX26_00424 0.88 -0.1
456,762 + -0.4
456,813 + -0.3
456,813 + +0.7
456,823 + -0.3
456,849 - +2.5

Or see this region's nucleotide sequence