Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16430

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00535 and A4249_RS16430 are separated by 297 nucleotidesA4249_RS16430 and A4249_RS00545 are separated by 164 nucleotides A4249_RS00535: A4249_RS00535 - DEAD/DEAH box helicase, at 89,492 to 90,967 _RS00535 A4249_RS16430: A4249_RS16430 - hypothetical protein, at 91,265 to 91,825 _RS16430 A4249_RS00545: A4249_RS00545 - hypothetical protein, at 91,990 to 92,742 _RS00545 Position (kb) 91 92Strain fitness (log2 ratio) -2 -1 0 1 2 3at 90.997 kb on - strandat 91.021 kb on + strandat 91.136 kb on + strandat 91.136 kb on + strandat 91.136 kb on + strandat 91.136 kb on + strandat 91.136 kb on + strandat 91.136 kb on + strandat 91.137 kb on - strandat 91.137 kb on - strandat 91.137 kb on - strandat 91.137 kb on - strandat 91.137 kb on - strandat 91.137 kb on - strandat 91.156 kb on + strandat 91.156 kb on + strandat 91.156 kb on + strandat 91.156 kb on + strandat 91.156 kb on + strandat 91.157 kb on - strandat 91.157 kb on - strandat 91.157 kb on - strandat 91.157 kb on - strandat 91.236 kb on + strandat 91.488 kb on + strand, within A4249_RS16430at 91.488 kb on + strand, within A4249_RS16430at 91.488 kb on + strand, within A4249_RS16430at 91.488 kb on + strand, within A4249_RS16430at 91.489 kb on - strand, within A4249_RS16430at 91.489 kb on - strand, within A4249_RS16430at 91.489 kb on - strand, within A4249_RS16430at 91.501 kb on + strand, within A4249_RS16430at 91.501 kb on + strand, within A4249_RS16430at 91.501 kb on + strand, within A4249_RS16430at 91.502 kb on - strand, within A4249_RS16430at 91.502 kb on - strand, within A4249_RS16430at 91.502 kb on - strand, within A4249_RS16430at 91.502 kb on - strand, within A4249_RS16430at 91.615 kb on + strand, within A4249_RS16430at 91.615 kb on + strand, within A4249_RS16430at 91.616 kb on - strand, within A4249_RS16430at 91.722 kb on + strand, within A4249_RS16430at 91.722 kb on + strand, within A4249_RS16430at 91.723 kb on - strand, within A4249_RS16430at 91.723 kb on - strand, within A4249_RS16430at 91.811 kb on + strandat 91.811 kb on + strandat 91.811 kb on + strandat 91.811 kb on + strandat 91.811 kb on + strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.812 kb on - strandat 91.966 kb on + strandat 92.005 kb on + strandat 92.006 kb on - strandat 92.006 kb on - strandat 92.050 kb on + strandat 92.050 kb on + strandat 92.050 kb on + strandat 92.050 kb on + strandat 92.050 kb on + strandat 92.051 kb on - strandat 92.051 kb on - strandat 92.051 kb on - strandat 92.051 kb on - strandat 92.051 kb on - strandat 92.051 kb on - strandat 92.332 kb on + strand, within A4249_RS00545at 92.332 kb on + strand, within A4249_RS00545at 92.332 kb on + strand, within A4249_RS00545at 92.333 kb on - strand, within A4249_RS00545at 92.333 kb on - strand, within A4249_RS00545at 92.497 kb on + strand, within A4249_RS00545at 92.497 kb on + strand, within A4249_RS00545at 92.498 kb on - strand, within A4249_RS00545at 92.498 kb on - strand, within A4249_RS00545at 92.498 kb on - strand, within A4249_RS00545at 92.677 kb on + strandat 92.677 kb on + strandat 92.677 kb on + strandat 92.677 kb on + strandat 92.678 kb on - strandat 92.786 kb on - strandat 92.800 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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90,997 - -0.2
91,021 + -1.1
91,136 + +1.6
91,136 + +0.4
91,136 + -0.2
91,136 + +1.8
91,136 + +0.7
91,136 + -0.2
91,137 - -0.6
91,137 - +0.6
91,137 - +0.5
91,137 - -0.4
91,137 - +2.0
91,137 - -0.5
91,156 + -0.8
91,156 + -0.7
91,156 + -0.1
91,156 + -1.4
91,156 + +0.9
91,157 - -0.3
91,157 - +0.1
91,157 - +0.7
91,157 - -1.3
91,236 + -0.4
91,488 + A4249_RS16430 0.40 +0.4
91,488 + A4249_RS16430 0.40 -0.8
91,488 + A4249_RS16430 0.40 +0.1
91,488 + A4249_RS16430 0.40 +0.7
91,489 - A4249_RS16430 0.40 -0.4
91,489 - A4249_RS16430 0.40 -0.3
91,489 - A4249_RS16430 0.40 +0.3
91,501 + A4249_RS16430 0.42 -0.1
91,501 + A4249_RS16430 0.42 +0.0
91,501 + A4249_RS16430 0.42 -1.0
91,502 - A4249_RS16430 0.42 -0.6
91,502 - A4249_RS16430 0.42 -0.9
91,502 - A4249_RS16430 0.42 -0.7
91,502 - A4249_RS16430 0.42 -0.1
91,615 + A4249_RS16430 0.62 -1.0
91,615 + A4249_RS16430 0.62 -0.1
91,616 - A4249_RS16430 0.63 +0.7
91,722 + A4249_RS16430 0.81 +1.8
91,722 + A4249_RS16430 0.81 +0.5
91,723 - A4249_RS16430 0.82 -1.1
91,723 - A4249_RS16430 0.82 -0.4
91,811 + +0.7
91,811 + +0.2
91,811 + +0.1
91,811 + +0.2
91,811 + -1.5
91,812 - -0.8
91,812 - -1.7
91,812 - -1.8
91,812 - -0.2
91,812 - -0.8
91,812 - -0.9
91,812 - +1.4
91,812 - -0.2
91,812 - -0.1
91,812 - -0.4
91,812 - -1.6
91,812 - -0.2
91,812 - -0.5
91,966 + +0.5
92,005 + +0.4
92,006 - -0.7
92,006 - -0.9
92,050 + -1.2
92,050 + +0.0
92,050 + -1.2
92,050 + -0.8
92,050 + +0.0
92,051 - -0.7
92,051 - +0.6
92,051 - +0.1
92,051 - +0.8
92,051 - -1.4
92,051 - -0.9
92,332 + A4249_RS00545 0.45 +0.1
92,332 + A4249_RS00545 0.45 +1.2
92,332 + A4249_RS00545 0.45 -0.1
92,333 - A4249_RS00545 0.46 -0.6
92,333 - A4249_RS00545 0.46 +3.4
92,497 + A4249_RS00545 0.67 +0.7
92,497 + A4249_RS00545 0.67 +0.7
92,498 - A4249_RS00545 0.67 +0.9
92,498 - A4249_RS00545 0.67 -0.7
92,498 - A4249_RS00545 0.67 +1.3
92,677 + -0.2
92,677 + -0.0
92,677 + +0.9
92,677 + -0.2
92,678 - +1.2
92,786 - -0.3
92,800 - -0.3

Or see this region's nucleotide sequence