Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16015

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS16005 and A4249_RS16010 are separated by 114 nucleotidesA4249_RS16010 and A4249_RS16015 overlap by 4 nucleotidesA4249_RS16015 and A4249_RS16020 are separated by 145 nucleotidesA4249_RS16020 and A4249_RS16025 are separated by 13 nucleotidesA4249_RS16025 and A4249_RS16030 are separated by 10 nucleotides A4249_RS16005: A4249_RS16005 - HU family DNA-binding protein, at 3,228,349 to 3,228,627 _RS16005 A4249_RS16010: A4249_RS16010 - flagellar type III secretion system pore protein FliP, at 3,228,742 to 3,229,554 _RS16010 A4249_RS16015: A4249_RS16015 - flagellar biosynthetic protein FliO, at 3,229,551 to 3,229,841 _RS16015 A4249_RS16020: A4249_RS16020 - flagellar basal body rod protein FlgB, at 3,229,987 to 3,230,391 _RS16020 A4249_RS16025: A4249_RS16025 - flagellar basal body rod protein FlgC, at 3,230,405 to 3,230,824 _RS16025 A4249_RS16030: A4249_RS16030 - flagellar hook-basal body complex protein FliE, at 3,230,835 to 3,231,137 _RS16030 Position (kb) 3229 3230Strain fitness (log2 ratio) -2 -1 0 1 2at 3228.720 kb on + strandat 3228.721 kb on - strandat 3228.728 kb on + strandat 3228.729 kb on - strandat 3228.744 kb on - strandat 3229.169 kb on + strand, within A4249_RS16010at 3229.170 kb on - strand, within A4249_RS16010at 3229.170 kb on - strand, within A4249_RS16010at 3229.754 kb on - strand, within A4249_RS16015at 3229.754 kb on - strand, within A4249_RS16015at 3229.924 kb on + strandat 3230.003 kb on + strandat 3230.004 kb on - strandat 3230.089 kb on - strand, within A4249_RS16020at 3230.089 kb on - strand, within A4249_RS16020at 3230.190 kb on + strand, within A4249_RS16020at 3230.191 kb on - strand, within A4249_RS16020at 3230.317 kb on + strand, within A4249_RS16020at 3230.317 kb on + strand, within A4249_RS16020at 3230.317 kb on + strand, within A4249_RS16020at 3230.317 kb on + strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.318 kb on - strand, within A4249_RS16020at 3230.338 kb on + strand, within A4249_RS16020at 3230.338 kb on + strand, within A4249_RS16020at 3230.338 kb on + strand, within A4249_RS16020at 3230.338 kb on + strand, within A4249_RS16020at 3230.339 kb on - strand, within A4249_RS16020at 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.402 kb on + strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.403 kb on - strandat 3230.648 kb on + strand, within A4249_RS16025at 3230.648 kb on + strand, within A4249_RS16025at 3230.648 kb on + strand, within A4249_RS16025at 3230.648 kb on + strand, within A4249_RS16025at 3230.648 kb on + strand, within A4249_RS16025at 3230.648 kb on + strand, within A4249_RS16025at 3230.648 kb on + strand, within A4249_RS16025at 3230.649 kb on - strand, within A4249_RS16025at 3230.649 kb on - strand, within A4249_RS16025at 3230.649 kb on - strand, within A4249_RS16025at 3230.649 kb on - strand, within A4249_RS16025at 3230.649 kb on - strand, within A4249_RS16025at 3230.649 kb on - strand, within A4249_RS16025at 3230.684 kb on + strand, within A4249_RS16025at 3230.684 kb on + strand, within A4249_RS16025at 3230.684 kb on + strand, within A4249_RS16025at 3230.685 kb on - strand, within A4249_RS16025at 3230.685 kb on - strand, within A4249_RS16025at 3230.685 kb on - strand, within A4249_RS16025at 3230.685 kb on - strand, within A4249_RS16025at 3230.685 kb on - strand, within A4249_RS16025at 3230.685 kb on - strand, within A4249_RS16025at 3230.685 kb on - strand, within A4249_RS16025at 3230.685 kb on - strand, within A4249_RS16025at 3230.750 kb on + strand, within A4249_RS16025at 3230.751 kb on - strand, within A4249_RS16025at 3230.829 kb on + strandat 3230.829 kb on + strandat 3230.829 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
3,228,720 + -1.0
3,228,721 - +0.1
3,228,728 + +0.9
3,228,729 - +1.8
3,228,744 - -0.9
3,229,169 + A4249_RS16010 0.53 +0.2
3,229,170 - A4249_RS16010 0.53 -0.5
3,229,170 - A4249_RS16010 0.53 -1.9
3,229,754 - A4249_RS16015 0.70 -1.0
3,229,754 - A4249_RS16015 0.70 +1.0
3,229,924 + +0.9
3,230,003 + +0.5
3,230,004 - -1.5
3,230,089 - A4249_RS16020 0.25 -1.2
3,230,089 - A4249_RS16020 0.25 +0.1
3,230,190 + A4249_RS16020 0.50 -0.2
3,230,191 - A4249_RS16020 0.50 +0.1
3,230,317 + A4249_RS16020 0.81 +0.1
3,230,317 + A4249_RS16020 0.81 +0.5
3,230,317 + A4249_RS16020 0.81 -0.9
3,230,317 + A4249_RS16020 0.81 +0.0
3,230,318 - A4249_RS16020 0.82 -0.7
3,230,318 - A4249_RS16020 0.82 +0.5
3,230,318 - A4249_RS16020 0.82 +0.4
3,230,318 - A4249_RS16020 0.82 +1.0
3,230,318 - A4249_RS16020 0.82 +0.0
3,230,318 - A4249_RS16020 0.82 +1.5
3,230,318 - A4249_RS16020 0.82 +0.2
3,230,318 - A4249_RS16020 0.82 +0.6
3,230,318 - A4249_RS16020 0.82 +0.0
3,230,338 + A4249_RS16020 0.87 +0.1
3,230,338 + A4249_RS16020 0.87 -0.5
3,230,338 + A4249_RS16020 0.87 -0.5
3,230,338 + A4249_RS16020 0.87 +0.1
3,230,339 - A4249_RS16020 0.87 +0.7
3,230,402 + -1.3
3,230,402 + -0.3
3,230,402 + +1.3
3,230,402 + -0.8
3,230,402 + +0.4
3,230,402 + -0.4
3,230,402 + -0.2
3,230,402 + -1.4
3,230,402 + -2.1
3,230,403 - -0.6
3,230,403 - +0.4
3,230,403 - -0.6
3,230,403 - +0.5
3,230,403 - +1.9
3,230,403 - +0.1
3,230,648 + A4249_RS16025 0.58 -0.4
3,230,648 + A4249_RS16025 0.58 -0.8
3,230,648 + A4249_RS16025 0.58 +1.3
3,230,648 + A4249_RS16025 0.58 -0.4
3,230,648 + A4249_RS16025 0.58 -0.6
3,230,648 + A4249_RS16025 0.58 -1.5
3,230,648 + A4249_RS16025 0.58 -1.9
3,230,649 - A4249_RS16025 0.58 +0.3
3,230,649 - A4249_RS16025 0.58 -0.5
3,230,649 - A4249_RS16025 0.58 +0.4
3,230,649 - A4249_RS16025 0.58 -0.2
3,230,649 - A4249_RS16025 0.58 +0.2
3,230,649 - A4249_RS16025 0.58 +0.5
3,230,684 + A4249_RS16025 0.66 +0.1
3,230,684 + A4249_RS16025 0.66 +0.3
3,230,684 + A4249_RS16025 0.66 +0.0
3,230,685 - A4249_RS16025 0.67 -0.5
3,230,685 - A4249_RS16025 0.67 +1.0
3,230,685 - A4249_RS16025 0.67 +1.1
3,230,685 - A4249_RS16025 0.67 -0.9
3,230,685 - A4249_RS16025 0.67 -0.9
3,230,685 - A4249_RS16025 0.67 -1.0
3,230,685 - A4249_RS16025 0.67 -1.1
3,230,685 - A4249_RS16025 0.67 +0.6
3,230,750 + A4249_RS16025 0.82 +1.2
3,230,751 - A4249_RS16025 0.82 -0.2
3,230,829 + +0.1
3,230,829 + -1.3
3,230,829 + -0.1

Or see this region's nucleotide sequence