Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15150

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15140 and A4249_RS15145 are separated by 83 nucleotidesA4249_RS15145 and A4249_RS15150 are separated by 420 nucleotidesA4249_RS15150 and A4249_RS15155 are separated by 255 nucleotides A4249_RS15140: A4249_RS15140 - TraB/GumN family protein, at 3,059,814 to 3,060,776 _RS15140 A4249_RS15145: A4249_RS15145 - tRNA-Gly, at 3,060,860 to 3,060,934 _RS15145 A4249_RS15150: A4249_RS15150 - hypothetical protein, at 3,061,355 to 3,061,921 _RS15150 A4249_RS15155: A4249_RS15155 - hypothetical protein, at 3,062,177 to 3,062,956 _RS15155 Position (kb) 3061 3062Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3060.493 kb on - strand, within A4249_RS15140at 3060.606 kb on + strand, within A4249_RS15140at 3060.606 kb on + strand, within A4249_RS15140at 3060.606 kb on + strand, within A4249_RS15140at 3060.607 kb on - strand, within A4249_RS15140at 3060.607 kb on - strand, within A4249_RS15140at 3060.775 kb on - strandat 3060.808 kb on + strandat 3060.867 kb on + strandat 3060.868 kb on - strand, within A4249_RS15145at 3060.868 kb on - strand, within A4249_RS15145at 3060.868 kb on - strand, within A4249_RS15145at 3060.868 kb on - strand, within A4249_RS15145at 3060.878 kb on + strand, within A4249_RS15145at 3060.878 kb on + strand, within A4249_RS15145at 3060.879 kb on - strand, within A4249_RS15145at 3060.879 kb on - strand, within A4249_RS15145at 3060.879 kb on - strand, within A4249_RS15145at 3060.879 kb on - strand, within A4249_RS15145at 3060.879 kb on - strand, within A4249_RS15145at 3060.879 kb on - strand, within A4249_RS15145at 3060.947 kb on + strandat 3060.947 kb on + strandat 3060.947 kb on + strandat 3060.948 kb on - strandat 3060.948 kb on - strandat 3061.027 kb on + strandat 3061.047 kb on + strandat 3061.048 kb on - strandat 3061.048 kb on - strandat 3061.048 kb on - strandat 3061.194 kb on + strandat 3061.195 kb on - strandat 3061.195 kb on - strandat 3061.195 kb on - strandat 3061.207 kb on - strandat 3061.207 kb on - strandat 3061.212 kb on + strandat 3061.399 kb on - strandat 3061.703 kb on + strand, within A4249_RS15150at 3061.704 kb on - strand, within A4249_RS15150at 3061.704 kb on - strand, within A4249_RS15150at 3061.704 kb on - strand, within A4249_RS15150at 3061.880 kb on + strandat 3062.255 kb on + strand, within A4249_RS15155at 3062.288 kb on + strand, within A4249_RS15155at 3062.288 kb on + strand, within A4249_RS15155at 3062.289 kb on - strand, within A4249_RS15155at 3062.289 kb on - strand, within A4249_RS15155at 3062.289 kb on - strand, within A4249_RS15155at 3062.289 kb on - strand, within A4249_RS15155at 3062.289 kb on - strand, within A4249_RS15155at 3062.338 kb on + strand, within A4249_RS15155at 3062.338 kb on + strand, within A4249_RS15155at 3062.338 kb on + strand, within A4249_RS15155at 3062.338 kb on + strand, within A4249_RS15155at 3062.338 kb on + strand, within A4249_RS15155at 3062.339 kb on - strand, within A4249_RS15155at 3062.339 kb on - strand, within A4249_RS15155at 3062.339 kb on - strand, within A4249_RS15155at 3062.378 kb on - strand, within A4249_RS15155at 3062.386 kb on + strand, within A4249_RS15155at 3062.386 kb on + strand, within A4249_RS15155at 3062.386 kb on + strand, within A4249_RS15155at 3062.386 kb on + strand, within A4249_RS15155at 3062.387 kb on - strand, within A4249_RS15155at 3062.387 kb on - strand, within A4249_RS15155at 3062.387 kb on - strand, within A4249_RS15155at 3062.387 kb on - strand, within A4249_RS15155at 3062.500 kb on + strand, within A4249_RS15155

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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3,060,493 - A4249_RS15140 0.71 +1.5
3,060,606 + A4249_RS15140 0.82 +3.0
3,060,606 + A4249_RS15140 0.82 -1.3
3,060,606 + A4249_RS15140 0.82 +2.1
3,060,607 - A4249_RS15140 0.82 +0.2
3,060,607 - A4249_RS15140 0.82 +1.1
3,060,775 - +1.2
3,060,808 + +0.9
3,060,867 + -1.5
3,060,868 - A4249_RS15145 0.11 -0.2
3,060,868 - A4249_RS15145 0.11 -1.2
3,060,868 - A4249_RS15145 0.11 -0.0
3,060,868 - A4249_RS15145 0.11 -0.7
3,060,878 + A4249_RS15145 0.24 -0.2
3,060,878 + A4249_RS15145 0.24 +0.8
3,060,879 - A4249_RS15145 0.25 +0.5
3,060,879 - A4249_RS15145 0.25 +0.3
3,060,879 - A4249_RS15145 0.25 +0.7
3,060,879 - A4249_RS15145 0.25 +0.0
3,060,879 - A4249_RS15145 0.25 +1.1
3,060,879 - A4249_RS15145 0.25 -1.0
3,060,947 + -0.7
3,060,947 + -0.2
3,060,947 + -1.6
3,060,948 - +0.2
3,060,948 - -2.5
3,061,027 + -0.6
3,061,047 + -1.6
3,061,048 - -0.4
3,061,048 - +0.6
3,061,048 - +0.1
3,061,194 + -0.7
3,061,195 - -0.7
3,061,195 - +0.2
3,061,195 - +0.1
3,061,207 - -1.2
3,061,207 - -0.7
3,061,212 + +2.2
3,061,399 - -1.0
3,061,703 + A4249_RS15150 0.61 -0.1
3,061,704 - A4249_RS15150 0.62 -1.5
3,061,704 - A4249_RS15150 0.62 -0.7
3,061,704 - A4249_RS15150 0.62 -0.7
3,061,880 + -2.3
3,062,255 + A4249_RS15155 0.10 -1.1
3,062,288 + A4249_RS15155 0.14 +0.8
3,062,288 + A4249_RS15155 0.14 -0.4
3,062,289 - A4249_RS15155 0.14 -0.3
3,062,289 - A4249_RS15155 0.14 -0.3
3,062,289 - A4249_RS15155 0.14 +0.6
3,062,289 - A4249_RS15155 0.14 +0.4
3,062,289 - A4249_RS15155 0.14 -0.5
3,062,338 + A4249_RS15155 0.21 +0.7
3,062,338 + A4249_RS15155 0.21 +0.7
3,062,338 + A4249_RS15155 0.21 -1.8
3,062,338 + A4249_RS15155 0.21 -1.2
3,062,338 + A4249_RS15155 0.21 -1.1
3,062,339 - A4249_RS15155 0.21 -0.1
3,062,339 - A4249_RS15155 0.21 -0.4
3,062,339 - A4249_RS15155 0.21 -0.7
3,062,378 - A4249_RS15155 0.26 -1.1
3,062,386 + A4249_RS15155 0.27 +0.6
3,062,386 + A4249_RS15155 0.27 -0.5
3,062,386 + A4249_RS15155 0.27 +0.2
3,062,386 + A4249_RS15155 0.27 +0.2
3,062,387 - A4249_RS15155 0.27 -0.3
3,062,387 - A4249_RS15155 0.27 +0.2
3,062,387 - A4249_RS15155 0.27 +0.2
3,062,387 - A4249_RS15155 0.27 +0.6
3,062,500 + A4249_RS15155 0.41 +0.5

Or see this region's nucleotide sequence