Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15110

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15100 and A4249_RS15105 are separated by 72 nucleotidesA4249_RS15105 and A4249_RS15110 are separated by 156 nucleotidesA4249_RS15110 and A4249_RS15115 overlap by 1 nucleotidesA4249_RS15115 and A4249_RS15120 are separated by 5 nucleotides A4249_RS15100: A4249_RS15100 - cytochrome c family protein, at 3,054,812 to 3,055,546 _RS15100 A4249_RS15105: A4249_RS15105 - malonic semialdehyde reductase, at 3,055,619 to 3,056,233 _RS15105 A4249_RS15110: A4249_RS15110 - YbaB/EbfC family nucleoid-associated protein, at 3,056,390 to 3,056,719 _RS15110 A4249_RS15115: A4249_RS15115 - recombination mediator RecR, at 3,056,719 to 3,057,321 _RS15115 A4249_RS15120: A4249_RS15120 - hypothetical protein, at 3,057,327 to 3,057,689 _RS15120 Position (kb) 3056 3057Strain fitness (log2 ratio) -2 -1 0 1 2at 3055.705 kb on + strand, within A4249_RS15105at 3055.705 kb on + strand, within A4249_RS15105at 3055.705 kb on + strand, within A4249_RS15105at 3055.706 kb on - strand, within A4249_RS15105at 3055.706 kb on - strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.707 kb on + strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.708 kb on - strand, within A4249_RS15105at 3055.818 kb on + strand, within A4249_RS15105at 3055.819 kb on - strand, within A4249_RS15105at 3056.100 kb on + strand, within A4249_RS15105at 3056.100 kb on + strand, within A4249_RS15105at 3056.100 kb on + strand, within A4249_RS15105at 3056.100 kb on + strand, within A4249_RS15105at 3056.100 kb on + strand, within A4249_RS15105at 3056.100 kb on + strand, within A4249_RS15105at 3056.100 kb on + strand, within A4249_RS15105at 3056.100 kb on + strand, within A4249_RS15105at 3056.101 kb on - strand, within A4249_RS15105at 3056.101 kb on - strand, within A4249_RS15105at 3056.101 kb on - strand, within A4249_RS15105at 3056.101 kb on - strand, within A4249_RS15105at 3056.101 kb on - strand, within A4249_RS15105at 3056.101 kb on - strand, within A4249_RS15105at 3056.101 kb on - strand, within A4249_RS15105at 3056.101 kb on - strand, within A4249_RS15105at 3056.219 kb on - strandat 3056.226 kb on + strandat 3056.226 kb on + strandat 3056.226 kb on + strandat 3056.226 kb on + strandat 3056.227 kb on - strandat 3056.227 kb on - strandat 3056.378 kb on + strandat 3056.378 kb on + strandat 3056.379 kb on - strandat 3056.382 kb on + strandat 3056.382 kb on + strandat 3056.382 kb on + strandat 3056.382 kb on + strandat 3056.382 kb on + strandat 3056.383 kb on - strandat 3056.383 kb on - strandat 3056.383 kb on - strandat 3056.383 kb on - strandat 3056.383 kb on - strandat 3056.383 kb on - strandat 3056.383 kb on - strandat 3056.383 kb on - strandat 3056.458 kb on + strand, within A4249_RS15110at 3056.458 kb on + strand, within A4249_RS15110at 3056.459 kb on - strand, within A4249_RS15110at 3056.459 kb on - strand, within A4249_RS15110at 3056.819 kb on + strand, within A4249_RS15115at 3057.034 kb on + strand, within A4249_RS15115at 3057.034 kb on + strand, within A4249_RS15115at 3057.034 kb on + strand, within A4249_RS15115at 3057.034 kb on + strand, within A4249_RS15115at 3057.034 kb on + strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.035 kb on - strand, within A4249_RS15115at 3057.131 kb on + strand, within A4249_RS15115at 3057.132 kb on - strand, within A4249_RS15115at 3057.187 kb on + strand, within A4249_RS15115at 3057.187 kb on + strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.188 kb on - strand, within A4249_RS15115at 3057.328 kb on + strandat 3057.328 kb on + strandat 3057.328 kb on + strandat 3057.328 kb on + strandat 3057.328 kb on + strandat 3057.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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3,055,705 + A4249_RS15105 0.14 -0.2
3,055,705 + A4249_RS15105 0.14 +0.3
3,055,705 + A4249_RS15105 0.14 +0.3
3,055,706 - A4249_RS15105 0.14 +0.3
3,055,706 - A4249_RS15105 0.14 -0.8
3,055,707 + A4249_RS15105 0.14 -0.0
3,055,707 + A4249_RS15105 0.14 -0.3
3,055,707 + A4249_RS15105 0.14 +0.4
3,055,707 + A4249_RS15105 0.14 -0.2
3,055,707 + A4249_RS15105 0.14 +0.2
3,055,707 + A4249_RS15105 0.14 +0.1
3,055,707 + A4249_RS15105 0.14 +0.2
3,055,707 + A4249_RS15105 0.14 -0.1
3,055,707 + A4249_RS15105 0.14 -1.4
3,055,707 + A4249_RS15105 0.14 +0.0
3,055,707 + A4249_RS15105 0.14 +0.7
3,055,707 + A4249_RS15105 0.14 +0.5
3,055,707 + A4249_RS15105 0.14 -1.3
3,055,707 + A4249_RS15105 0.14 -0.5
3,055,707 + A4249_RS15105 0.14 +1.7
3,055,707 + A4249_RS15105 0.14 +0.1
3,055,707 + A4249_RS15105 0.14 -0.2
3,055,707 + A4249_RS15105 0.14 -1.6
3,055,707 + A4249_RS15105 0.14 -0.6
3,055,707 + A4249_RS15105 0.14 -0.2
3,055,708 - A4249_RS15105 0.14 +0.3
3,055,708 - A4249_RS15105 0.14 +0.3
3,055,708 - A4249_RS15105 0.14 +1.4
3,055,708 - A4249_RS15105 0.14 +0.2
3,055,708 - A4249_RS15105 0.14 +0.2
3,055,708 - A4249_RS15105 0.14 +0.3
3,055,708 - A4249_RS15105 0.14 +0.3
3,055,708 - A4249_RS15105 0.14 +0.5
3,055,708 - A4249_RS15105 0.14 -0.6
3,055,708 - A4249_RS15105 0.14 +0.4
3,055,708 - A4249_RS15105 0.14 -0.3
3,055,818 + A4249_RS15105 0.32 +0.3
3,055,819 - A4249_RS15105 0.33 +0.0
3,056,100 + A4249_RS15105 0.78 -1.1
3,056,100 + A4249_RS15105 0.78 +0.5
3,056,100 + A4249_RS15105 0.78 -0.6
3,056,100 + A4249_RS15105 0.78 -0.1
3,056,100 + A4249_RS15105 0.78 -0.9
3,056,100 + A4249_RS15105 0.78 +0.8
3,056,100 + A4249_RS15105 0.78 -0.9
3,056,100 + A4249_RS15105 0.78 -0.1
3,056,101 - A4249_RS15105 0.78 -0.2
3,056,101 - A4249_RS15105 0.78 -1.1
3,056,101 - A4249_RS15105 0.78 -0.7
3,056,101 - A4249_RS15105 0.78 -1.0
3,056,101 - A4249_RS15105 0.78 +0.3
3,056,101 - A4249_RS15105 0.78 -1.7
3,056,101 - A4249_RS15105 0.78 -1.0
3,056,101 - A4249_RS15105 0.78 +1.0
3,056,219 - +0.1
3,056,226 + +0.0
3,056,226 + +0.2
3,056,226 + -2.4
3,056,226 + -1.3
3,056,227 - -0.5
3,056,227 - +0.3
3,056,378 + +0.8
3,056,378 + -1.2
3,056,379 - +0.4
3,056,382 + -0.7
3,056,382 + +0.7
3,056,382 + -2.0
3,056,382 + -0.9
3,056,382 + -1.1
3,056,383 - -0.3
3,056,383 - -0.3
3,056,383 - -0.4
3,056,383 - -1.2
3,056,383 - -0.0
3,056,383 - +0.2
3,056,383 - -0.8
3,056,383 - -1.1
3,056,458 + A4249_RS15110 0.21 -0.2
3,056,458 + A4249_RS15110 0.21 -0.6
3,056,459 - A4249_RS15110 0.21 -0.5
3,056,459 - A4249_RS15110 0.21 +0.2
3,056,819 + A4249_RS15115 0.17 +0.5
3,057,034 + A4249_RS15115 0.52 -0.5
3,057,034 + A4249_RS15115 0.52 -0.7
3,057,034 + A4249_RS15115 0.52 +0.1
3,057,034 + A4249_RS15115 0.52 +0.3
3,057,034 + A4249_RS15115 0.52 +0.2
3,057,035 - A4249_RS15115 0.52 -1.1
3,057,035 - A4249_RS15115 0.52 -1.1
3,057,035 - A4249_RS15115 0.52 +1.7
3,057,035 - A4249_RS15115 0.52 +0.4
3,057,035 - A4249_RS15115 0.52 -0.4
3,057,035 - A4249_RS15115 0.52 -0.3
3,057,035 - A4249_RS15115 0.52 -0.6
3,057,035 - A4249_RS15115 0.52 -0.3
3,057,035 - A4249_RS15115 0.52 +0.5
3,057,035 - A4249_RS15115 0.52 -1.0
3,057,035 - A4249_RS15115 0.52 +0.4
3,057,035 - A4249_RS15115 0.52 -1.0
3,057,035 - A4249_RS15115 0.52 +0.9
3,057,131 + A4249_RS15115 0.68 +0.1
3,057,132 - A4249_RS15115 0.68 -0.1
3,057,187 + A4249_RS15115 0.78 +0.6
3,057,187 + A4249_RS15115 0.78 -0.5
3,057,188 - A4249_RS15115 0.78 +0.2
3,057,188 - A4249_RS15115 0.78 -0.4
3,057,188 - A4249_RS15115 0.78 +1.5
3,057,188 - A4249_RS15115 0.78 +1.9
3,057,188 - A4249_RS15115 0.78 +0.2
3,057,188 - A4249_RS15115 0.78 -1.4
3,057,188 - A4249_RS15115 0.78 -0.3
3,057,188 - A4249_RS15115 0.78 +1.0
3,057,188 - A4249_RS15115 0.78 -0.4
3,057,328 + -0.6
3,057,328 + -0.9
3,057,328 + -0.1
3,057,328 + -0.7
3,057,328 + -0.5
3,057,329 - +0.3

Or see this region's nucleotide sequence