Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14900

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14890 and A4249_RS14895 are separated by 79 nucleotidesA4249_RS14895 and A4249_RS14900 overlap by 4 nucleotidesA4249_RS14900 and A4249_RS14905 overlap by 4 nucleotidesA4249_RS14905 and A4249_RS14910 are separated by 106 nucleotides A4249_RS14890: A4249_RS14890 - substrate-binding domain-containing protein, at 3,013,242 to 3,014,309 _RS14890 A4249_RS14895: A4249_RS14895 - phosphonate ABC transporter, permease protein PhnE, at 3,014,389 to 3,015,201 _RS14895 A4249_RS14900: A4249_RS14900 - phosphate/phosphite/phosphonate ABC transporter substrate-binding protein, at 3,015,198 to 3,016,214 _RS14900 A4249_RS14905: A4249_RS14905 - phosphonate ABC transporter ATP-binding protein, at 3,016,211 to 3,017,020 _RS14905 A4249_RS14910: A4249_RS14910 - DUF2254 domain-containing protein, at 3,017,127 to 3,018,356 _RS14910 Position (kb) 3015 3016 3017Strain fitness (log2 ratio) -1 0 1 2 3at 3014.345 kb on + strandat 3014.345 kb on + strandat 3014.345 kb on + strandat 3014.345 kb on + strandat 3014.346 kb on - strandat 3014.346 kb on - strandat 3014.358 kb on + strandat 3014.358 kb on + strandat 3014.358 kb on + strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.359 kb on - strandat 3014.390 kb on + strandat 3014.390 kb on + strandat 3014.390 kb on + strandat 3014.579 kb on + strand, within A4249_RS14895at 3014.794 kb on + strand, within A4249_RS14895at 3014.795 kb on - strand, within A4249_RS14895at 3015.089 kb on + strand, within A4249_RS14895at 3015.089 kb on + strand, within A4249_RS14895at 3015.089 kb on + strand, within A4249_RS14895at 3015.089 kb on + strand, within A4249_RS14895at 3015.090 kb on - strand, within A4249_RS14895at 3015.090 kb on - strand, within A4249_RS14895at 3015.090 kb on - strand, within A4249_RS14895at 3015.090 kb on - strand, within A4249_RS14895at 3015.331 kb on + strand, within A4249_RS14900at 3015.331 kb on + strand, within A4249_RS14900at 3015.331 kb on + strand, within A4249_RS14900at 3015.331 kb on + strand, within A4249_RS14900at 3015.331 kb on + strand, within A4249_RS14900at 3015.332 kb on - strand, within A4249_RS14900at 3015.332 kb on - strand, within A4249_RS14900at 3015.332 kb on - strand, within A4249_RS14900at 3015.362 kb on - strand, within A4249_RS14900at 3015.421 kb on + strand, within A4249_RS14900at 3015.421 kb on + strand, within A4249_RS14900at 3015.421 kb on + strand, within A4249_RS14900at 3015.421 kb on + strand, within A4249_RS14900at 3015.422 kb on - strand, within A4249_RS14900at 3015.422 kb on - strand, within A4249_RS14900at 3015.422 kb on - strand, within A4249_RS14900at 3015.754 kb on + strand, within A4249_RS14900at 3015.754 kb on + strand, within A4249_RS14900at 3015.754 kb on + strand, within A4249_RS14900at 3015.755 kb on - strand, within A4249_RS14900at 3015.755 kb on - strand, within A4249_RS14900at 3015.826 kb on + strand, within A4249_RS14900at 3015.826 kb on + strand, within A4249_RS14900at 3015.826 kb on + strand, within A4249_RS14900at 3015.826 kb on + strand, within A4249_RS14900at 3015.826 kb on + strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.827 kb on - strand, within A4249_RS14900at 3015.964 kb on + strand, within A4249_RS14900at 3015.964 kb on + strand, within A4249_RS14900at 3015.964 kb on + strand, within A4249_RS14900at 3015.964 kb on + strand, within A4249_RS14900at 3015.965 kb on - strand, within A4249_RS14900at 3015.979 kb on + strand, within A4249_RS14900at 3015.980 kb on - strand, within A4249_RS14900at 3015.980 kb on - strand, within A4249_RS14900at 3016.179 kb on + strandat 3016.179 kb on + strandat 3016.254 kb on + strandat 3016.255 kb on - strandat 3016.255 kb on - strandat 3016.302 kb on + strand, within A4249_RS14905at 3016.302 kb on + strand, within A4249_RS14905at 3016.303 kb on - strand, within A4249_RS14905at 3016.345 kb on - strand, within A4249_RS14905at 3016.497 kb on - strand, within A4249_RS14905at 3016.497 kb on - strand, within A4249_RS14905at 3016.566 kb on + strand, within A4249_RS14905at 3016.635 kb on - strand, within A4249_RS14905at 3016.635 kb on - strand, within A4249_RS14905at 3016.985 kb on + strandat 3016.986 kb on - strandat 3017.030 kb on - strandat 3017.030 kb on - strandat 3017.037 kb on + strandat 3017.038 kb on - strandat 3017.058 kb on + strandat 3017.058 kb on + strandat 3017.059 kb on - strandat 3017.059 kb on - strandat 3017.086 kb on + strandat 3017.087 kb on - strandat 3017.087 kb on - strandat 3017.087 kb on - strandat 3017.161 kb on + strandat 3017.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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3,014,345 + -0.0
3,014,345 + +0.2
3,014,345 + -1.3
3,014,345 + +0.4
3,014,346 - -0.3
3,014,346 - +0.0
3,014,358 + +0.9
3,014,358 + +0.2
3,014,358 + +0.7
3,014,359 - +0.2
3,014,359 - -0.3
3,014,359 - +0.1
3,014,359 - +1.2
3,014,359 - -1.0
3,014,359 - -0.3
3,014,359 - -0.2
3,014,359 - -0.3
3,014,359 - -0.5
3,014,359 - -0.2
3,014,390 + -1.4
3,014,390 + +0.7
3,014,390 + +0.8
3,014,579 + A4249_RS14895 0.23 +0.2
3,014,794 + A4249_RS14895 0.50 -0.3
3,014,795 - A4249_RS14895 0.50 +1.2
3,015,089 + A4249_RS14895 0.86 +0.1
3,015,089 + A4249_RS14895 0.86 +1.2
3,015,089 + A4249_RS14895 0.86 -0.6
3,015,089 + A4249_RS14895 0.86 -0.3
3,015,090 - A4249_RS14895 0.86 +0.2
3,015,090 - A4249_RS14895 0.86 +0.7
3,015,090 - A4249_RS14895 0.86 +2.7
3,015,090 - A4249_RS14895 0.86 -1.2
3,015,331 + A4249_RS14900 0.13 +1.4
3,015,331 + A4249_RS14900 0.13 -0.2
3,015,331 + A4249_RS14900 0.13 +0.6
3,015,331 + A4249_RS14900 0.13 +1.8
3,015,331 + A4249_RS14900 0.13 +0.6
3,015,332 - A4249_RS14900 0.13 -0.1
3,015,332 - A4249_RS14900 0.13 -0.8
3,015,332 - A4249_RS14900 0.13 -0.2
3,015,362 - A4249_RS14900 0.16 -0.6
3,015,421 + A4249_RS14900 0.22 +1.6
3,015,421 + A4249_RS14900 0.22 -1.2
3,015,421 + A4249_RS14900 0.22 -0.3
3,015,421 + A4249_RS14900 0.22 +0.0
3,015,422 - A4249_RS14900 0.22 -0.5
3,015,422 - A4249_RS14900 0.22 -1.2
3,015,422 - A4249_RS14900 0.22 -1.2
3,015,754 + A4249_RS14900 0.55 +1.9
3,015,754 + A4249_RS14900 0.55 -0.9
3,015,754 + A4249_RS14900 0.55 -0.9
3,015,755 - A4249_RS14900 0.55 +0.2
3,015,755 - A4249_RS14900 0.55 +2.8
3,015,826 + A4249_RS14900 0.62 +1.2
3,015,826 + A4249_RS14900 0.62 -0.6
3,015,826 + A4249_RS14900 0.62 +0.1
3,015,826 + A4249_RS14900 0.62 +1.0
3,015,826 + A4249_RS14900 0.62 +0.4
3,015,827 - A4249_RS14900 0.62 +0.1
3,015,827 - A4249_RS14900 0.62 -0.2
3,015,827 - A4249_RS14900 0.62 -0.6
3,015,827 - A4249_RS14900 0.62 +0.7
3,015,827 - A4249_RS14900 0.62 -0.2
3,015,827 - A4249_RS14900 0.62 -1.5
3,015,827 - A4249_RS14900 0.62 +0.7
3,015,827 - A4249_RS14900 0.62 +0.7
3,015,827 - A4249_RS14900 0.62 -0.2
3,015,964 + A4249_RS14900 0.75 +0.2
3,015,964 + A4249_RS14900 0.75 +0.0
3,015,964 + A4249_RS14900 0.75 -0.2
3,015,964 + A4249_RS14900 0.75 -0.6
3,015,965 - A4249_RS14900 0.75 +0.0
3,015,979 + A4249_RS14900 0.77 -1.3
3,015,980 - A4249_RS14900 0.77 +0.9
3,015,980 - A4249_RS14900 0.77 +1.0
3,016,179 + -0.7
3,016,179 + +0.5
3,016,254 + +1.2
3,016,255 - -0.4
3,016,255 - -1.5
3,016,302 + A4249_RS14905 0.11 +1.7
3,016,302 + A4249_RS14905 0.11 +0.4
3,016,303 - A4249_RS14905 0.11 +0.7
3,016,345 - A4249_RS14905 0.17 -1.7
3,016,497 - A4249_RS14905 0.35 +1.4
3,016,497 - A4249_RS14905 0.35 +0.2
3,016,566 + A4249_RS14905 0.44 +1.4
3,016,635 - A4249_RS14905 0.52 +1.0
3,016,635 - A4249_RS14905 0.52 +0.2
3,016,985 + +1.1
3,016,986 - +0.6
3,017,030 - -1.4
3,017,030 - -1.6
3,017,037 + -0.2
3,017,038 - +0.5
3,017,058 + +2.0
3,017,058 + +2.3
3,017,059 - +0.8
3,017,059 - +0.2
3,017,086 + +0.7
3,017,087 - -0.9
3,017,087 - -0.7
3,017,087 - +1.0
3,017,161 + -0.6
3,017,162 - -1.3

Or see this region's nucleotide sequence