Experiment: Inosine 0.3728 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS14815 and A4249_RS14820 are separated by 144 nucleotides A4249_RS14820 and A4249_RS14825 are separated by 139 nucleotides A4249_RS14825 and A4249_RS14830 are separated by 1 nucleotides
A4249_RS14815: A4249_RS14815 - nicotinate-nucleotide adenylyltransferase, at 2,998,978 to 2,999,643
_RS14815
A4249_RS14820: A4249_RS14820 - ribosome silencing factor, at 2,999,788 to 3,000,222
_RS14820
A4249_RS14825: A4249_RS14825 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 3,000,362 to 3,000,826
_RS14825
A4249_RS14830: A4249_RS14830 - peptidoglycan DD-metalloendopeptidase family protein, at 3,000,828 to 3,001,907
_RS14830
Position (kb)
3000
3001 Strain fitness (log2 ratio)
-2
-1
0
1 at 2999.610 kb on + strand at 2999.690 kb on + strand at 2999.704 kb on - strand at 2999.746 kb on + strand at 2999.747 kb on - strand at 2999.751 kb on + strand at 2999.751 kb on + strand at 2999.751 kb on + strand at 2999.751 kb on + strand at 2999.751 kb on + strand at 2999.751 kb on + strand at 2999.752 kb on - strand at 3000.166 kb on + strand, within A4249_RS14820 at 3000.166 kb on + strand, within A4249_RS14820 at 3000.166 kb on + strand, within A4249_RS14820 at 3000.166 kb on + strand, within A4249_RS14820 at 3000.166 kb on + strand, within A4249_RS14820 at 3000.166 kb on + strand, within A4249_RS14820 at 3000.167 kb on - strand, within A4249_RS14820 at 3000.167 kb on - strand, within A4249_RS14820 at 3000.167 kb on - strand, within A4249_RS14820 at 3000.167 kb on - strand, within A4249_RS14820 at 3000.167 kb on - strand, within A4249_RS14820 at 3000.167 kb on - strand, within A4249_RS14820 at 3000.167 kb on - strand, within A4249_RS14820 at 3000.167 kb on - strand, within A4249_RS14820 at 3000.264 kb on + strand at 3000.264 kb on + strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.265 kb on - strand at 3000.287 kb on + strand at 3000.287 kb on + strand at 3000.287 kb on + strand at 3000.288 kb on - strand at 3000.355 kb on + strand at 3000.355 kb on + strand at 3000.355 kb on + strand at 3000.355 kb on + strand at 3000.355 kb on + strand at 3000.355 kb on + strand at 3000.355 kb on + strand at 3000.356 kb on - strand at 3000.428 kb on + strand, within A4249_RS14825 at 3000.429 kb on - strand, within A4249_RS14825 at 3000.429 kb on - strand, within A4249_RS14825 at 3000.590 kb on + strand, within A4249_RS14825 at 3000.590 kb on + strand, within A4249_RS14825 at 3000.590 kb on + strand, within A4249_RS14825 at 3000.591 kb on - strand, within A4249_RS14825 at 3000.591 kb on - strand, within A4249_RS14825 at 3000.779 kb on + strand, within A4249_RS14825 at 3000.780 kb on - strand at 3000.780 kb on - strand at 3000.812 kb on + strand at 3000.813 kb on - strand at 3000.813 kb on - strand at 3000.813 kb on - strand at 3000.841 kb on + strand at 3000.842 kb on - strand at 3000.939 kb on + strand, within A4249_RS14830 at 3000.940 kb on - strand, within A4249_RS14830
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C) remove 2,999,610 + -0.1 2,999,690 + +0.1 2,999,704 - -0.5 2,999,746 + -1.6 2,999,747 - +1.0 2,999,751 + +0.4 2,999,751 + +0.8 2,999,751 + -0.3 2,999,751 + +0.3 2,999,751 + +0.1 2,999,751 + -1.5 2,999,752 - -0.3 3,000,166 + A4249_RS14820 0.87 +0.4 3,000,166 + A4249_RS14820 0.87 +0.3 3,000,166 + A4249_RS14820 0.87 -1.3 3,000,166 + A4249_RS14820 0.87 -0.7 3,000,166 + A4249_RS14820 0.87 -0.1 3,000,166 + A4249_RS14820 0.87 -0.3 3,000,167 - A4249_RS14820 0.87 -1.0 3,000,167 - A4249_RS14820 0.87 -0.7 3,000,167 - A4249_RS14820 0.87 +1.0 3,000,167 - A4249_RS14820 0.87 +0.6 3,000,167 - A4249_RS14820 0.87 +1.0 3,000,167 - A4249_RS14820 0.87 +0.0 3,000,167 - A4249_RS14820 0.87 -0.4 3,000,167 - A4249_RS14820 0.87 -0.2 3,000,264 + -0.6 3,000,264 + +0.1 3,000,265 - -1.9 3,000,265 - -0.1 3,000,265 - -0.2 3,000,265 - +0.6 3,000,265 - -0.4 3,000,265 - +0.8 3,000,265 - -1.4 3,000,265 - +0.7 3,000,265 - -1.7 3,000,265 - -1.5 3,000,287 + -0.3 3,000,287 + -1.4 3,000,287 + -0.8 3,000,288 - +0.2 3,000,355 + -0.2 3,000,355 + +0.6 3,000,355 + +0.0 3,000,355 + -0.7 3,000,355 + -0.0 3,000,355 + -0.4 3,000,355 + -0.6 3,000,356 - -0.7 3,000,428 + A4249_RS14825 0.14 -0.8 3,000,429 - A4249_RS14825 0.14 -1.5 3,000,429 - A4249_RS14825 0.14 -0.6 3,000,590 + A4249_RS14825 0.49 +0.1 3,000,590 + A4249_RS14825 0.49 -1.8 3,000,590 + A4249_RS14825 0.49 -0.9 3,000,591 - A4249_RS14825 0.49 +1.1 3,000,591 - A4249_RS14825 0.49 -0.9 3,000,779 + A4249_RS14825 0.90 -0.3 3,000,780 - +0.2 3,000,780 - -0.1 3,000,812 + +0.8 3,000,813 - -0.2 3,000,813 - -0.5 3,000,813 - +0.1 3,000,841 + +1.3 3,000,842 - +0.4 3,000,939 + A4249_RS14830 0.10 -0.5 3,000,940 - A4249_RS14830 0.10 +0.7
Or see this region's nucleotide sequence