Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14825

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14815 and A4249_RS14820 are separated by 144 nucleotidesA4249_RS14820 and A4249_RS14825 are separated by 139 nucleotidesA4249_RS14825 and A4249_RS14830 are separated by 1 nucleotides A4249_RS14815: A4249_RS14815 - nicotinate-nucleotide adenylyltransferase, at 2,998,978 to 2,999,643 _RS14815 A4249_RS14820: A4249_RS14820 - ribosome silencing factor, at 2,999,788 to 3,000,222 _RS14820 A4249_RS14825: A4249_RS14825 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 3,000,362 to 3,000,826 _RS14825 A4249_RS14830: A4249_RS14830 - peptidoglycan DD-metalloendopeptidase family protein, at 3,000,828 to 3,001,907 _RS14830 Position (kb) 3000 3001Strain fitness (log2 ratio) -2 -1 0 1at 2999.610 kb on + strandat 2999.690 kb on + strandat 2999.704 kb on - strandat 2999.746 kb on + strandat 2999.747 kb on - strandat 2999.751 kb on + strandat 2999.751 kb on + strandat 2999.751 kb on + strandat 2999.751 kb on + strandat 2999.751 kb on + strandat 2999.751 kb on + strandat 2999.752 kb on - strandat 3000.166 kb on + strand, within A4249_RS14820at 3000.166 kb on + strand, within A4249_RS14820at 3000.166 kb on + strand, within A4249_RS14820at 3000.166 kb on + strand, within A4249_RS14820at 3000.166 kb on + strand, within A4249_RS14820at 3000.166 kb on + strand, within A4249_RS14820at 3000.167 kb on - strand, within A4249_RS14820at 3000.167 kb on - strand, within A4249_RS14820at 3000.167 kb on - strand, within A4249_RS14820at 3000.167 kb on - strand, within A4249_RS14820at 3000.167 kb on - strand, within A4249_RS14820at 3000.167 kb on - strand, within A4249_RS14820at 3000.167 kb on - strand, within A4249_RS14820at 3000.167 kb on - strand, within A4249_RS14820at 3000.264 kb on + strandat 3000.264 kb on + strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.265 kb on - strandat 3000.287 kb on + strandat 3000.287 kb on + strandat 3000.287 kb on + strandat 3000.288 kb on - strandat 3000.355 kb on + strandat 3000.355 kb on + strandat 3000.355 kb on + strandat 3000.355 kb on + strandat 3000.355 kb on + strandat 3000.355 kb on + strandat 3000.355 kb on + strandat 3000.356 kb on - strandat 3000.428 kb on + strand, within A4249_RS14825at 3000.429 kb on - strand, within A4249_RS14825at 3000.429 kb on - strand, within A4249_RS14825at 3000.590 kb on + strand, within A4249_RS14825at 3000.590 kb on + strand, within A4249_RS14825at 3000.590 kb on + strand, within A4249_RS14825at 3000.591 kb on - strand, within A4249_RS14825at 3000.591 kb on - strand, within A4249_RS14825at 3000.779 kb on + strand, within A4249_RS14825at 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.812 kb on + strandat 3000.813 kb on - strandat 3000.813 kb on - strandat 3000.813 kb on - strandat 3000.841 kb on + strandat 3000.842 kb on - strandat 3000.939 kb on + strand, within A4249_RS14830at 3000.940 kb on - strand, within A4249_RS14830

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,999,610 + -0.1
2,999,690 + +0.1
2,999,704 - -0.5
2,999,746 + -1.6
2,999,747 - +1.0
2,999,751 + +0.4
2,999,751 + +0.8
2,999,751 + -0.3
2,999,751 + +0.3
2,999,751 + +0.1
2,999,751 + -1.5
2,999,752 - -0.3
3,000,166 + A4249_RS14820 0.87 +0.4
3,000,166 + A4249_RS14820 0.87 +0.3
3,000,166 + A4249_RS14820 0.87 -1.3
3,000,166 + A4249_RS14820 0.87 -0.7
3,000,166 + A4249_RS14820 0.87 -0.1
3,000,166 + A4249_RS14820 0.87 -0.3
3,000,167 - A4249_RS14820 0.87 -1.0
3,000,167 - A4249_RS14820 0.87 -0.7
3,000,167 - A4249_RS14820 0.87 +1.0
3,000,167 - A4249_RS14820 0.87 +0.6
3,000,167 - A4249_RS14820 0.87 +1.0
3,000,167 - A4249_RS14820 0.87 +0.0
3,000,167 - A4249_RS14820 0.87 -0.4
3,000,167 - A4249_RS14820 0.87 -0.2
3,000,264 + -0.6
3,000,264 + +0.1
3,000,265 - -1.9
3,000,265 - -0.1
3,000,265 - -0.2
3,000,265 - +0.6
3,000,265 - -0.4
3,000,265 - +0.8
3,000,265 - -1.4
3,000,265 - +0.7
3,000,265 - -1.7
3,000,265 - -1.5
3,000,287 + -0.3
3,000,287 + -1.4
3,000,287 + -0.8
3,000,288 - +0.2
3,000,355 + -0.2
3,000,355 + +0.6
3,000,355 + +0.0
3,000,355 + -0.7
3,000,355 + -0.0
3,000,355 + -0.4
3,000,355 + -0.6
3,000,356 - -0.7
3,000,428 + A4249_RS14825 0.14 -0.8
3,000,429 - A4249_RS14825 0.14 -1.5
3,000,429 - A4249_RS14825 0.14 -0.6
3,000,590 + A4249_RS14825 0.49 +0.1
3,000,590 + A4249_RS14825 0.49 -1.8
3,000,590 + A4249_RS14825 0.49 -0.9
3,000,591 - A4249_RS14825 0.49 +1.1
3,000,591 - A4249_RS14825 0.49 -0.9
3,000,779 + A4249_RS14825 0.90 -0.3
3,000,780 - +0.2
3,000,780 - -0.1
3,000,812 + +0.8
3,000,813 - -0.2
3,000,813 - -0.5
3,000,813 - +0.1
3,000,841 + +1.3
3,000,842 - +0.4
3,000,939 + A4249_RS14830 0.10 -0.5
3,000,940 - A4249_RS14830 0.10 +0.7

Or see this region's nucleotide sequence