Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13395

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13390 and A4249_RS13395 are separated by 208 nucleotidesA4249_RS13395 and A4249_RS13400 are separated by 50 nucleotidesA4249_RS13400 and A4249_RS13405 are separated by 382 nucleotides A4249_RS13390: A4249_RS13390 - NADP-dependent isocitrate dehydrogenase, at 2,704,905 to 2,706,125 _RS13390 A4249_RS13395: A4249_RS13395 - DUF2939 domain-containing protein, at 2,706,334 to 2,706,915 _RS13395 A4249_RS13400: A4249_RS13400 - DUF2939 domain-containing protein, at 2,706,966 to 2,707,520 _RS13400 A4249_RS13405: A4249_RS13405 - alanine--tRNA ligase, at 2,707,903 to 2,710,560 _RS13405 Position (kb) 2706 2707Strain fitness (log2 ratio) -2 -1 0 1at 2706.130 kb on - strandat 2706.130 kb on - strandat 2706.234 kb on + strandat 2706.235 kb on - strandat 2706.318 kb on + strandat 2706.629 kb on - strand, within A4249_RS13395at 2706.677 kb on - strand, within A4249_RS13395at 2706.677 kb on - strand, within A4249_RS13395at 2706.751 kb on + strand, within A4249_RS13395at 2706.751 kb on + strand, within A4249_RS13395at 2706.751 kb on + strand, within A4249_RS13395at 2706.751 kb on + strand, within A4249_RS13395at 2707.380 kb on + strand, within A4249_RS13400at 2707.380 kb on + strand, within A4249_RS13400at 2707.380 kb on + strand, within A4249_RS13400at 2707.381 kb on - strand, within A4249_RS13400at 2707.381 kb on - strand, within A4249_RS13400at 2707.472 kb on + strandat 2707.546 kb on + strandat 2707.546 kb on + strandat 2707.547 kb on - strandat 2707.547 kb on - strandat 2707.547 kb on - strandat 2707.547 kb on - strandat 2707.547 kb on - strandat 2707.547 kb on - strandat 2707.547 kb on - strandat 2707.555 kb on + strandat 2707.555 kb on + strandat 2707.555 kb on + strandat 2707.556 kb on - strandat 2707.654 kb on + strandat 2707.655 kb on - strandat 2707.656 kb on + strandat 2707.656 kb on + strandat 2707.656 kb on + strandat 2707.656 kb on + strandat 2707.657 kb on - strandat 2707.657 kb on - strandat 2707.657 kb on - strandat 2707.657 kb on - strandat 2707.657 kb on - strandat 2707.657 kb on - strandat 2707.702 kb on + strandat 2707.703 kb on - strandat 2707.797 kb on + strandat 2707.797 kb on + strandat 2707.797 kb on + strandat 2707.797 kb on + strandat 2707.798 kb on - strandat 2707.798 kb on - strandat 2707.798 kb on - strandat 2707.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,706,130 - -0.2
2,706,130 - +0.4
2,706,234 + -0.2
2,706,235 - +0.4
2,706,318 + -0.2
2,706,629 - A4249_RS13395 0.51 +0.8
2,706,677 - A4249_RS13395 0.59 -1.0
2,706,677 - A4249_RS13395 0.59 -0.2
2,706,751 + A4249_RS13395 0.72 -2.2
2,706,751 + A4249_RS13395 0.72 -2.2
2,706,751 + A4249_RS13395 0.72 -0.2
2,706,751 + A4249_RS13395 0.72 -0.5
2,707,380 + A4249_RS13400 0.75 -0.5
2,707,380 + A4249_RS13400 0.75 -0.0
2,707,380 + A4249_RS13400 0.75 -1.1
2,707,381 - A4249_RS13400 0.75 +0.4
2,707,381 - A4249_RS13400 0.75 +0.1
2,707,472 + +1.1
2,707,546 + +0.3
2,707,546 + -1.1
2,707,547 - -1.3
2,707,547 - +1.7
2,707,547 - -0.6
2,707,547 - -0.6
2,707,547 - +0.1
2,707,547 - +0.2
2,707,547 - +0.2
2,707,555 + -1.6
2,707,555 + +1.3
2,707,555 + -0.2
2,707,556 - -0.4
2,707,654 + +0.3
2,707,655 - +0.3
2,707,656 + +0.2
2,707,656 + -0.2
2,707,656 + +0.2
2,707,656 + +0.5
2,707,657 - -0.3
2,707,657 - -1.9
2,707,657 - -0.4
2,707,657 - +0.4
2,707,657 - -0.7
2,707,657 - -0.3
2,707,702 + -0.8
2,707,703 - -1.0
2,707,797 + +0.4
2,707,797 + +0.4
2,707,797 + -0.1
2,707,797 + -1.3
2,707,798 - +0.1
2,707,798 - +0.0
2,707,798 - -0.1
2,707,904 + +0.5

Or see this region's nucleotide sequence