Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12205

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS12195 and A4249_RS12200 are separated by 30 nucleotidesA4249_RS12200 and A4249_RS12205 are separated by 37 nucleotidesA4249_RS12205 and A4249_RS12210 overlap by 19 nucleotidesA4249_RS12210 and A4249_RS12215 overlap by 4 nucleotides A4249_RS12195: A4249_RS12195 - primosomal protein N', at 2,449,318 to 2,451,495 _RS12195 A4249_RS12200: A4249_RS12200 - fructose-6-phosphate aldolase, at 2,451,526 to 2,452,179 _RS12200 A4249_RS12205: A4249_RS12205 - DUF484 family protein, at 2,452,217 to 2,452,930 _RS12205 A4249_RS12210: A4249_RS12210 - tyrosine recombinase XerC, at 2,452,912 to 2,453,841 _RS12210 A4249_RS12215: A4249_RS12215 - hypothetical protein, at 2,453,838 to 2,454,182 _RS12215 Position (kb) 2452 2453Strain fitness (log2 ratio) -1 0 1 2at 2451.513 kb on + strandat 2451.514 kb on - strandat 2451.514 kb on - strandat 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.925 kb on - strand, within A4249_RS12200at 2451.976 kb on + strand, within A4249_RS12200at 2451.977 kb on - strand, within A4249_RS12200at 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.177 kb on + strandat 2452.178 kb on - strandat 2452.178 kb on - strandat 2452.708 kb on - strand, within A4249_RS12205at 2452.920 kb on + strandat 2453.008 kb on + strand, within A4249_RS12210at 2453.008 kb on + strand, within A4249_RS12210at 2453.029 kb on + strand, within A4249_RS12210at 2453.030 kb on - strand, within A4249_RS12210at 2453.030 kb on - strand, within A4249_RS12210at 2453.387 kb on - strand, within A4249_RS12210at 2453.530 kb on + strand, within A4249_RS12210at 2453.779 kb on + strandat 2453.780 kb on - strandat 2453.840 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
2,451,513 + -0.1
2,451,514 - -0.4
2,451,514 - +2.4
2,451,923 + A4249_RS12200 0.61 +1.7
2,451,923 + A4249_RS12200 0.61 +0.8
2,451,923 + A4249_RS12200 0.61 +1.3
2,451,923 + A4249_RS12200 0.61 +0.8
2,451,924 - A4249_RS12200 0.61 +1.9
2,451,924 - A4249_RS12200 0.61 +0.2
2,451,924 - A4249_RS12200 0.61 +0.3
2,451,925 - A4249_RS12200 0.61 +2.2
2,451,976 + A4249_RS12200 0.69 +1.1
2,451,977 - A4249_RS12200 0.69 -0.0
2,452,170 + +2.5
2,452,170 + +0.3
2,452,170 + +1.5
2,452,170 + +1.0
2,452,170 + +0.5
2,452,170 + +0.5
2,452,170 + -0.3
2,452,170 + +1.6
2,452,170 + +0.6
2,452,171 - +1.2
2,452,171 - +1.1
2,452,171 - +1.0
2,452,171 - -0.1
2,452,171 - +1.4
2,452,171 - +1.6
2,452,177 + +0.1
2,452,178 - -0.4
2,452,178 - +0.4
2,452,708 - A4249_RS12205 0.69 -0.6
2,452,920 + -0.2
2,453,008 + A4249_RS12210 0.10 +1.4
2,453,008 + A4249_RS12210 0.10 +2.1
2,453,029 + A4249_RS12210 0.13 -0.4
2,453,030 - A4249_RS12210 0.13 -0.4
2,453,030 - A4249_RS12210 0.13 -0.1
2,453,387 - A4249_RS12210 0.51 -0.2
2,453,530 + A4249_RS12210 0.66 -0.7
2,453,779 + +1.4
2,453,780 - -0.4
2,453,840 - +0.5

Or see this region's nucleotide sequence