Experiment: Inosine 0.3728 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11760 and A4249_RS11765 are separated by 56 nucleotides A4249_RS11765 and A4249_RS11770 are separated by 28 nucleotides A4249_RS11770 and A4249_RS11775 are separated by 53 nucleotides A4249_RS11775 and A4249_RS11780 are separated by 331 nucleotides
A4249_RS11760: A4249_RS11760 - TolC family protein, at 2,363,041 to 2,364,294
_RS11760
A4249_RS11765: A4249_RS11765 - hypothetical protein, at 2,364,351 to 2,364,707
_RS11765
A4249_RS11770: A4249_RS11770 - cation transporter, at 2,364,736 to 2,365,404
_RS11770
A4249_RS11775: A4249_RS11775 - helix-turn-helix domain-containing protein, at 2,365,458 to 2,365,904
_RS11775
A4249_RS11780: A4249_RS11780 - hypothetical protein, at 2,366,236 to 2,366,601
_RS11780
Position (kb)
2364
2365
2366 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2363.870 kb on + strand, within A4249_RS11760 at 2363.870 kb on + strand, within A4249_RS11760 at 2363.870 kb on + strand, within A4249_RS11760 at 2363.870 kb on + strand, within A4249_RS11760 at 2363.871 kb on - strand, within A4249_RS11760 at 2363.871 kb on - strand, within A4249_RS11760 at 2364.050 kb on + strand, within A4249_RS11760 at 2364.051 kb on - strand, within A4249_RS11760 at 2364.128 kb on + strand, within A4249_RS11760 at 2364.128 kb on + strand, within A4249_RS11760 at 2364.128 kb on + strand, within A4249_RS11760 at 2364.188 kb on + strand at 2364.188 kb on + strand at 2364.188 kb on + strand at 2364.188 kb on + strand at 2364.189 kb on - strand at 2364.189 kb on - strand at 2364.189 kb on - strand at 2364.189 kb on - strand at 2364.189 kb on - strand at 2364.189 kb on - strand at 2364.189 kb on - strand at 2364.707 kb on + strand at 2364.707 kb on + strand at 2364.707 kb on + strand at 2364.707 kb on + strand at 2364.707 kb on + strand at 2364.707 kb on + strand at 2364.708 kb on - strand at 2364.708 kb on - strand at 2364.708 kb on - strand at 2364.708 kb on - strand at 2364.708 kb on - strand at 2364.708 kb on - strand at 2364.708 kb on - strand at 2364.708 kb on - strand at 2364.725 kb on + strand at 2364.781 kb on - strand at 2364.995 kb on - strand, within A4249_RS11770 at 2365.184 kb on + strand, within A4249_RS11770 at 2365.185 kb on - strand, within A4249_RS11770 at 2365.185 kb on - strand, within A4249_RS11770 at 2365.284 kb on + strand, within A4249_RS11770 at 2365.446 kb on + strand at 2365.446 kb on + strand at 2365.446 kb on + strand at 2365.447 kb on - strand at 2365.448 kb on + strand at 2365.448 kb on + strand at 2365.448 kb on + strand at 2365.448 kb on + strand at 2365.448 kb on + strand at 2365.448 kb on + strand at 2365.449 kb on - strand at 2365.449 kb on - strand at 2365.449 kb on - strand at 2365.449 kb on - strand at 2365.545 kb on + strand, within A4249_RS11775 at 2365.546 kb on - strand, within A4249_RS11775 at 2365.546 kb on - strand, within A4249_RS11775 at 2365.546 kb on - strand, within A4249_RS11775 at 2365.546 kb on - strand, within A4249_RS11775 at 2365.602 kb on + strand, within A4249_RS11775 at 2365.603 kb on - strand, within A4249_RS11775 at 2365.603 kb on - strand, within A4249_RS11775 at 2365.808 kb on + strand, within A4249_RS11775 at 2365.808 kb on + strand, within A4249_RS11775 at 2365.808 kb on + strand, within A4249_RS11775 at 2365.809 kb on - strand, within A4249_RS11775 at 2365.809 kb on - strand, within A4249_RS11775 at 2366.000 kb on + strand at 2366.000 kb on + strand at 2366.000 kb on + strand at 2366.000 kb on + strand at 2366.000 kb on + strand at 2366.235 kb on + strand at 2366.235 kb on + strand at 2366.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C) remove 2,363,870 + A4249_RS11760 0.66 -0.2 2,363,870 + A4249_RS11760 0.66 +0.2 2,363,870 + A4249_RS11760 0.66 +0.8 2,363,870 + A4249_RS11760 0.66 +0.9 2,363,871 - A4249_RS11760 0.66 -2.0 2,363,871 - A4249_RS11760 0.66 -0.6 2,364,050 + A4249_RS11760 0.80 +0.6 2,364,051 - A4249_RS11760 0.81 +0.3 2,364,128 + A4249_RS11760 0.87 -0.0 2,364,128 + A4249_RS11760 0.87 -0.7 2,364,128 + A4249_RS11760 0.87 +0.5 2,364,188 + -0.5 2,364,188 + -0.4 2,364,188 + -0.1 2,364,188 + -1.3 2,364,189 - -0.3 2,364,189 - +1.8 2,364,189 - -0.3 2,364,189 - +0.9 2,364,189 - +1.4 2,364,189 - -0.5 2,364,189 - +0.6 2,364,707 + -0.8 2,364,707 + -0.5 2,364,707 + +0.3 2,364,707 + -1.5 2,364,707 + -0.4 2,364,707 + +0.3 2,364,708 - +1.0 2,364,708 - -0.7 2,364,708 - -0.0 2,364,708 - -0.3 2,364,708 - +0.2 2,364,708 - -0.9 2,364,708 - -2.7 2,364,708 - +0.9 2,364,725 + -0.1 2,364,781 - +0.2 2,364,995 - A4249_RS11770 0.39 -0.7 2,365,184 + A4249_RS11770 0.67 +0.3 2,365,185 - A4249_RS11770 0.67 -0.6 2,365,185 - A4249_RS11770 0.67 +0.6 2,365,284 + A4249_RS11770 0.82 +0.3 2,365,446 + -0.6 2,365,446 + +1.0 2,365,446 + -0.6 2,365,447 - -0.6 2,365,448 + +0.2 2,365,448 + -0.5 2,365,448 + -0.8 2,365,448 + -0.5 2,365,448 + -0.2 2,365,448 + -0.4 2,365,449 - -1.7 2,365,449 - -0.1 2,365,449 - -0.3 2,365,449 - -0.0 2,365,545 + A4249_RS11775 0.19 -1.3 2,365,546 - A4249_RS11775 0.20 -0.3 2,365,546 - A4249_RS11775 0.20 -0.7 2,365,546 - A4249_RS11775 0.20 -0.1 2,365,546 - A4249_RS11775 0.20 +1.3 2,365,602 + A4249_RS11775 0.32 -1.0 2,365,603 - A4249_RS11775 0.32 -1.7 2,365,603 - A4249_RS11775 0.32 +1.0 2,365,808 + A4249_RS11775 0.78 -1.1 2,365,808 + A4249_RS11775 0.78 -0.4 2,365,808 + A4249_RS11775 0.78 -1.3 2,365,809 - A4249_RS11775 0.79 -0.2 2,365,809 - A4249_RS11775 0.79 -0.1 2,366,000 + +0.1 2,366,000 + -1.0 2,366,000 + -1.0 2,366,000 + -0.4 2,366,000 + -0.8 2,366,235 + +0.6 2,366,235 + -1.0 2,366,236 - -0.3
Or see this region's nucleotide sequence