Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11360

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11350 and A4249_RS11355 are separated by 32 nucleotidesA4249_RS11355 and A4249_RS11360 are separated by 4 nucleotidesA4249_RS11360 and A4249_RS11365 are separated by 139 nucleotides A4249_RS11350: A4249_RS11350 - pseudouridine synthase, at 2,286,983 to 2,287,717 _RS11350 A4249_RS11355: A4249_RS11355 - class I SAM-dependent methyltransferase, at 2,287,750 to 2,288,649 _RS11355 A4249_RS11360: A4249_RS11360 - undecaprenyl-diphosphate phosphatase, at 2,288,654 to 2,289,455 _RS11360 A4249_RS11365: A4249_RS11365 - cation diffusion facilitator family transporter, at 2,289,595 to 2,290,581 _RS11365 Position (kb) 2288 2289 2290Strain fitness (log2 ratio) -2 -1 0 1at 2287.665 kb on + strandat 2287.666 kb on - strandat 2287.775 kb on + strandat 2287.776 kb on - strandat 2287.776 kb on - strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.836 kb on - strandat 2288.040 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.633 kb on + strandat 2288.633 kb on + strandat 2289.512 kb on + strandat 2289.686 kb on + strandat 2289.686 kb on + strandat 2289.686 kb on + strandat 2289.687 kb on - strandat 2289.838 kb on + strand, within A4249_RS11365at 2289.838 kb on + strand, within A4249_RS11365at 2289.839 kb on - strand, within A4249_RS11365at 2289.903 kb on + strand, within A4249_RS11365at 2289.903 kb on + strand, within A4249_RS11365at 2289.904 kb on - strand, within A4249_RS11365at 2289.904 kb on - strand, within A4249_RS11365at 2290.081 kb on + strand, within A4249_RS11365

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,287,665 + +0.3
2,287,666 - +0.1
2,287,775 + -1.4
2,287,776 - -0.7
2,287,776 - -0.3
2,287,835 + +0.1
2,287,835 + -1.1
2,287,835 + +0.5
2,287,835 + -0.1
2,287,836 - -0.3
2,288,040 + A4249_RS11355 0.32 +0.8
2,288,483 + A4249_RS11355 0.81 -1.4
2,288,483 + A4249_RS11355 0.81 -1.2
2,288,483 + A4249_RS11355 0.81 -0.1
2,288,483 + A4249_RS11355 0.81 -0.3
2,288,483 + A4249_RS11355 0.81 +0.2
2,288,483 + A4249_RS11355 0.81 -0.5
2,288,484 - A4249_RS11355 0.82 -1.3
2,288,484 - A4249_RS11355 0.82 -0.2
2,288,484 - A4249_RS11355 0.82 -1.0
2,288,484 - A4249_RS11355 0.82 -1.6
2,288,484 - A4249_RS11355 0.82 -0.0
2,288,484 - A4249_RS11355 0.82 +0.6
2,288,484 - A4249_RS11355 0.82 +0.0
2,288,484 - A4249_RS11355 0.82 +1.1
2,288,513 + A4249_RS11355 0.85 -0.9
2,288,513 + A4249_RS11355 0.85 +0.3
2,288,513 + A4249_RS11355 0.85 +0.9
2,288,514 - A4249_RS11355 0.85 -1.9
2,288,514 - A4249_RS11355 0.85 -1.9
2,288,514 - A4249_RS11355 0.85 -0.7
2,288,514 - A4249_RS11355 0.85 -0.3
2,288,514 - A4249_RS11355 0.85 +0.1
2,288,633 + +1.1
2,288,633 + +0.1
2,289,512 + -0.5
2,289,686 + -0.7
2,289,686 + -0.5
2,289,686 + +0.5
2,289,687 - +1.7
2,289,838 + A4249_RS11365 0.25 -1.3
2,289,838 + A4249_RS11365 0.25 +0.8
2,289,839 - A4249_RS11365 0.25 -1.8
2,289,903 + A4249_RS11365 0.31 +1.5
2,289,903 + A4249_RS11365 0.31 +0.1
2,289,904 - A4249_RS11365 0.31 +1.5
2,289,904 - A4249_RS11365 0.31 +0.1
2,290,081 + A4249_RS11365 0.49 -0.6

Or see this region's nucleotide sequence