Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10315

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10300 and A4249_RS10305 are separated by 81 nucleotidesA4249_RS10305 and A4249_RS10310 are separated by 92 nucleotidesA4249_RS10310 and A4249_RS10315 are separated by 195 nucleotidesA4249_RS10315 and A4249_RS10320 overlap by 13 nucleotides A4249_RS10300: A4249_RS10300 - endo-1,4-beta-xylanase, at 2,068,531 to 2,069,598 _RS10300 A4249_RS10305: A4249_RS10305 - hypothetical protein, at 2,069,680 to 2,069,925 _RS10305 A4249_RS10310: A4249_RS10310 - hypothetical protein, at 2,070,018 to 2,070,212 _RS10310 A4249_RS10315: A4249_RS10315 - response regulator transcription factor, at 2,070,408 to 2,071,124 _RS10315 A4249_RS10320: A4249_RS10320 - HAMP domain-containing sensor histidine kinase, at 2,071,112 to 2,072,425 _RS10320 Position (kb) 2070 2071 2072Strain fitness (log2 ratio) -3 -2 -1 0 1at 2069.681 kb on + strandat 2069.681 kb on + strandat 2069.931 kb on + strandat 2069.931 kb on + strandat 2069.931 kb on + strandat 2069.931 kb on + strandat 2069.931 kb on + strandat 2069.931 kb on + strandat 2069.931 kb on + strandat 2069.932 kb on - strandat 2069.932 kb on - strandat 2070.004 kb on + strandat 2070.005 kb on - strandat 2070.019 kb on + strandat 2070.019 kb on + strandat 2070.019 kb on + strandat 2070.019 kb on + strandat 2070.019 kb on + strandat 2070.020 kb on - strandat 2070.343 kb on - strandat 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.717 kb on + strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.718 kb on - strand, within A4249_RS10315at 2070.719 kb on + strand, within A4249_RS10315at 2070.719 kb on + strand, within A4249_RS10315at 2070.719 kb on + strand, within A4249_RS10315at 2070.719 kb on + strand, within A4249_RS10315at 2070.720 kb on - strand, within A4249_RS10315at 2070.720 kb on - strand, within A4249_RS10315at 2070.720 kb on - strand, within A4249_RS10315at 2070.720 kb on - strand, within A4249_RS10315at 2070.720 kb on - strand, within A4249_RS10315at 2070.720 kb on - strand, within A4249_RS10315at 2071.089 kb on + strandat 2071.089 kb on + strandat 2071.089 kb on + strandat 2071.089 kb on + strandat 2071.089 kb on + strandat 2071.089 kb on + strandat 2071.090 kb on - strandat 2071.090 kb on - strandat 2071.090 kb on - strandat 2071.090 kb on - strandat 2071.090 kb on - strandat 2071.091 kb on + strandat 2071.091 kb on + strandat 2071.091 kb on + strandat 2071.091 kb on + strandat 2071.091 kb on + strandat 2071.091 kb on + strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.092 kb on - strandat 2071.111 kb on + strandat 2071.111 kb on + strandat 2071.111 kb on + strandat 2071.111 kb on + strandat 2071.111 kb on + strandat 2071.112 kb on - strandat 2071.122 kb on + strandat 2071.122 kb on + strandat 2071.122 kb on + strandat 2071.123 kb on - strandat 2071.123 kb on - strandat 2071.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,069,681 + -0.6
2,069,681 + +1.3
2,069,931 + -1.2
2,069,931 + -0.3
2,069,931 + -0.2
2,069,931 + -0.6
2,069,931 + +0.9
2,069,931 + -0.4
2,069,931 + +0.0
2,069,932 - -0.6
2,069,932 - -1.0
2,070,004 + +0.4
2,070,005 - -1.1
2,070,019 + -1.0
2,070,019 + +0.5
2,070,019 + +0.2
2,070,019 + +1.3
2,070,019 + -0.8
2,070,020 - -0.2
2,070,343 - -0.6
2,070,717 + A4249_RS10315 0.43 -1.3
2,070,717 + A4249_RS10315 0.43 +0.0
2,070,717 + A4249_RS10315 0.43 -1.3
2,070,717 + A4249_RS10315 0.43 -0.4
2,070,717 + A4249_RS10315 0.43 +1.3
2,070,717 + A4249_RS10315 0.43 +1.1
2,070,717 + A4249_RS10315 0.43 -0.0
2,070,717 + A4249_RS10315 0.43 -0.4
2,070,717 + A4249_RS10315 0.43 -0.4
2,070,717 + A4249_RS10315 0.43 +0.1
2,070,718 - A4249_RS10315 0.43 +0.0
2,070,718 - A4249_RS10315 0.43 +0.3
2,070,718 - A4249_RS10315 0.43 -0.2
2,070,718 - A4249_RS10315 0.43 -0.1
2,070,718 - A4249_RS10315 0.43 -0.7
2,070,718 - A4249_RS10315 0.43 +0.3
2,070,718 - A4249_RS10315 0.43 +0.4
2,070,718 - A4249_RS10315 0.43 +0.9
2,070,718 - A4249_RS10315 0.43 +1.4
2,070,719 + A4249_RS10315 0.43 -0.7
2,070,719 + A4249_RS10315 0.43 +0.4
2,070,719 + A4249_RS10315 0.43 +0.0
2,070,719 + A4249_RS10315 0.43 +1.6
2,070,720 - A4249_RS10315 0.44 -0.0
2,070,720 - A4249_RS10315 0.44 +0.2
2,070,720 - A4249_RS10315 0.44 -1.1
2,070,720 - A4249_RS10315 0.44 -0.1
2,070,720 - A4249_RS10315 0.44 +0.6
2,070,720 - A4249_RS10315 0.44 +0.9
2,071,089 + +0.6
2,071,089 + -1.6
2,071,089 + +0.8
2,071,089 + +1.4
2,071,089 + -1.0
2,071,089 + +0.1
2,071,090 - +0.6
2,071,090 - -0.5
2,071,090 - -0.1
2,071,090 - +0.5
2,071,090 - -0.2
2,071,091 + -0.8
2,071,091 + -1.8
2,071,091 + +0.1
2,071,091 + -0.1
2,071,091 + -0.9
2,071,091 + -2.9
2,071,092 - +0.8
2,071,092 - +1.3
2,071,092 - -0.4
2,071,092 - -0.8
2,071,092 - -0.1
2,071,092 - +0.6
2,071,092 - +1.5
2,071,092 - -2.4
2,071,092 - -0.9
2,071,092 - -0.9
2,071,111 + -0.3
2,071,111 + +0.7
2,071,111 + +0.2
2,071,111 + -0.8
2,071,111 + -0.0
2,071,112 - -0.7
2,071,122 + -0.7
2,071,122 + +0.1
2,071,122 + +0.0
2,071,123 - -0.2
2,071,123 - +1.3
2,071,123 - -2.4

Or see this region's nucleotide sequence